IndraLab

Statements


PRPF8 affects SNRNP200
17 | 19 22
PRPF8 binds SNRNP200.
17 | 10 19
17 | 9 12

sparser
"Furthermore, TSSC4 directly interacts with the SNRNP200 (U5 snRNP 200 kDa helicase) and the PRPF8 spliceosomal scaffold."

No evidence text available

sparser
"For example, pathogenic variants in PRPF8 and SNRNP200 were clustered in their interaction regions, where defects disrupted PRPF8SNRNP200 interactions. xref – xref Previously, situations similar to that of TOPORS have been reported in the RP1 gene, in which causative heterozygous truncating variants are only located in a specific region in the middle of the gene. xref – xref Regarding TOPORS , products resulting from pathogenic truncating variants located in the last exon and downstream of the SR/RS domain may escape nonsense-mediated mRNA decay (NMD) xref and reduce the activity of the wild-type allele via the dominant-negative effect."

No evidence text available

reach
"In the nucleus, PRPF8 is forming a complex with EFTUD2 and SNRNP200 (also known as BRR2) as part of the spliceosome."

No evidence text available

sparser
"In addition, a small but reproducible reduction of SNRNP200 and PRPF8 binding was also observed in the case of the Δ201–250 deletion mutant."

No evidence text available

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reach
"These Prp8-RP mutants directly affect U5 snRNP and tri-snRNP maturation (Boon et al. 2007), Brr2 helicase, and ATPase activities (Pena et al. 2007; Maeder et al. 2009; Mozaffari-Jovin et al. 2013), and yeast-two-hybrid interactions between Brr2, Prp8, and Snu114 (Table 1; Pena et al. 2007)."
| 1 6

sparser
"Remarkably, the GFP-ZNHIT2 SILAC IP revealed a strong association of this factor with EFTUD2, PRPF8, and SNRNP200."

sparser
"Specifically, TSSC4 interacts with U5-specific proteins PRPF8, EFTUD2 and SNRNP200."

sparser
"Importantly, our results suggest that components of Complex B, and more specifically BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP complex [ xref ], phenocopy PRPF8 most strongly."

sparser
"AAR2, ZNHIT2, and the HSP90/R2TP complex associate with the U5-specific proteins EFTUD2, PRPF8, and SNRNP200."

sparser
"Similarly, in humans, yeast two-hybrid and in vitro binding assays have demonstrated physical interactions between EFTUD2, SNRNP200 and PRPF8 proteins ( xref , xref ), and these interactions have been confirmed by recent cryo-EM structures of the human U4/U6."

sparser
"Notably, depletion of the spliceosome components BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP [ xref ], most strongly phenocopy PRPF8 deficiency (Fig.  xref ; Additional file xref b, c)."

reach
"In addition to the PRPF8, EFTUD2, and SNRNP200 complex, our proteomics analysis as well as previous analyses found that SNW1 was in complex with another splicing subcomplex, PRP19 complex."
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
PRPF8 inhibits SNRNP200.
| 4 3
| 4 3

reach
"A C-terminal fragment of Prp8 was shown to inhibit Brr2 ATPase activity in vitro [ 35 ]."

sparser
"Given the mechanistic analogy between histone mRNA processing and splicing, we thus envisage that SLBP ubiquitylation may suppress hPrp43 helicase activity in histone mRNA processing similar to Prp8 u[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

reach
"These proteins show multiple strong genetic (Kuhn et al. 2002; Bottner et al. 2005; Grainger and Beggs 2005; Liu et al. 2006), yeast-two-hybrid (van Nues and Beggs 2001), and physical interactions (Achsel et al. 1998), indicating a high degree of coordination between them.Initial genetic evidence indicated that the Prp8 C-terminal Jab1/MPN domain negatively regulated Brr2 unwinding during splicing (Kuhn and Brow 2000; Kuhn et al. 2002)."

reach
"Thus Prp8-RP mutations provide a potent tool to understand how deregulation of Brr2 by Prp8 impacts splicing.Here we present evidence that Prp8-RP mutants deregulate Brr2 activity both in vitro and in vivo."

sparser
"A model was proposed in which inhibition of Brr2 by the ubiquitinated Prp8 leads to spliceosome assembly and stabilization of the triple snRNP (U4/U6–U5)."
| PMC

sparser
"In humans, phosphorylation of Prp6 that occurs after the tri-snRNP being integrated into the B-complex may release the inhibition of Brr2 by Prp8 and is important for spliceosomal B-complex activation [ xref , xref ]."

reach
"The RNase H domain of PRPF8 inhibits loading of SNRNP200 to U4 snRNA, and a C-terminal part of PRPF8 modulates the SNRNP200 activity for the unwinding of U4/U6 snRNA duplex XREF_BIBR - XREF_BIBR."
PRPF8 activates SNRNP200.
| 5
| 5

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"The carboxy‐terminal region of the spliceosomal protein PRPF8, which modulates the RNA helicase Brr2, is a mutation hotspot linked to retinitis pigmentosa‐type 13, although its precise function in human splicing and tissue‐specific mechanisms remains unclear."

reach
"Although it has been demonstrated that the PRPF8 RNase H domain inhibits SNRNP200 activity and GTP bound EFTUD2 and that the C-terminus of PRPF8 induces the activation of SNRNP200 XREF_BIBR - XREF_BIBR, the detailed molecular mechanisms of the activation of SNRNP200 remains to be determined."

reach
"Prp8, which directly regulates Brr2 activity (Maeder et al. 2009; Nielsen and Staley 2012; Mozaffari-Jovin et al. 2013; Nguyen et al. 2013), has also been implicated in 3′SS selection (Umen and Guthrie 1995a,b, 1996; Siatecka et al. 1999) as well as the transition between the first and second catalytic steps (Frank et al. 1992; Query and Konarska 2004; Liu et al. 2007)."

reach
"Indeed a C-terminal fragment of Prp8 — encompassing the RNaseH-like and Jab/MPN1-like domains — strongly stimulates Brr2-dependent U4/U6 unwinding in vitro [ 44 ]."

reach
"The RNase H domain of PRPF8 inhibits loading of SNRNP200 to U4 snRNA, and a C-terminal part of PRPF8 modulates the SNRNP200 activity for the unwinding of U4/U6 snRNA duplex XREF_BIBR - XREF_BIBR."
PRPF8 is modified
5 | 51
PRPF8 is phosphorylated.
5 | 40
PRPF8 is phosphorylated. 10 / 38
| 38

sparser
"In addition, okadaic acid-induced hyperphosphorylation of elF-4E and p220 results in the recruitment of more p220 protein into the cap- binding complex 1731."

sparser
"Thus, eIF-4F p220, eIF-4B and ribosomal protein S6 are phosphorylated via PMA-dependent and insulin-dependent pathways, whereas phosphorylation of eIF-4F p25 and eIF-3 p120 is stimulated only upon activation of protein kinase C. Phosphopeptide maps of eIF-4F p220 and ribosomal protein S6 suggest that protease-activated kinase II is one of the protein kinases involved in the insulin-stimulated response in protein kinase C-depleted cells."

sparser
"This kinase was not inhibited by the cAMP-dependent protein kinase inhibitory peptide IAAGRTGRRNAIHDILVAA, did not phosphorylate $6 ribosomal protein, did not phosphorylate p220 of elF-4F as protein kinase C does and no other substrates for this kinase were apparent in reticulocyte ribosomal salt wash."

sparser
"Selective inhibition of p220 NPAT phosphorylation by CKIs at Subnuclear Foci."

sparser
"To facilitate histone genes transcription during cell cycle cyclin E/CDK2 phosphorylates p220(NPAT) [ xref ]."

sparser
"Partial digests of phosphorylated p180 and p220 produced with chymotrypsin or V8 protease reveal that each protein has a distinct phosphopeptide pattern."

sparser
"Moreover, anti-TNF-alpha antibodies inhibit LPS-stimulated phosphorylation of eIF-4E and p220 by 43% (+/- 6%) and 50% (+/- 5%), respectively."

sparser
"We report here that insulin-like growth factor I-stimulated phosphorylation of two endogenous substrate proteins, pp220 and pp170, is also inhibited in cells expressing A/K1018 receptors."

sparser
"Addition of insulin to these down-regulated cells leads to stimulation of phosphorylation of eIF-4F p220, ribosomal protein S6, and to a lesser extent, eIF-4B; little or no stimulation of phosphorylation of eIF-4F p25 and eIF-3 p120 is observed."

sparser
"We have further found that p220 is phosphorylated specifically in M phase."
PRPF8 is phosphorylated on Y254. 2 / 2
2 |

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PRPF8 is phosphorylated on serine. 2 / 2
| 2

sparser
"Phosphoamino acid analysis of the isolated proteins demonstrated that both P220 and P180 were phosphorylated only at serine residues (Fig. 3, A and B)."

sparser
"Both p180 and p220 are phosphorylated exclusively at serine residues."
PRPF8 is phosphorylated on T247. 1 / 1
1 |

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PRPF8 is phosphorylated on S2079. 1 / 1
1 |

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PRPF8 is phosphorylated on S1027. 1 / 1
1 |

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PRPF8 is ubiquitinated.
| 9
PRPF8 is ubiquitinated. 9 / 9
| 9

sparser
"A model was proposed in which inhibition of Brr2 by the ubiquitinated Prp8 leads to spliceosome assembly and stabilization of the triple snRNP (U4/U6–U5)."
| PMC

sparser
"In addition to recent studies suggesting that ubiquitination of Prp8 regulates tri-snRNP disassembly, xref , xref there are other indications that ubiquitin or ubiquitin-like proteins (such as Sumo and Hub1) play additional roles in splicing."

sparser
"Shortly afterwards, it was also demonstrated that the E3 ligase named Prp19 increases the affinity between the ubiquitinated Prp3 protein and Prp8, thus contributing to stabilization of the triple snRNP."
| PMC

sparser
"Staley and Sontheimer uncovered a regulatory mechanism, namely that the activity of Brr2 is negatively regulated by ubiquitination of Prp8 (ref. xref )."

sparser
"Finally, we show that the conserved splicing factor Prp8 is ubiquitinated within purified triple snRNPs."

sparser
"Later, it was shown that ubiquitination and deubiquitination of Prp8 might regulate U4/U6 unwinding required for activation of the spliceosome [ xref ]."

sparser
"Prp8, a key RNA-binding splicing factor, is ubiquitylated to suppress the U4/U6 snRNAs unwinding activity of Brr2 helicase and promote spliceosome assembly."

sparser
"Important questions that can be addressed using our minimal system include determining whether the Prp8-CTF also promotes Brr2-depending unwinding of U2 and U6, and whether helicase activity is inhibited by Prp8 ubiquitination."

sparser
"It was further demonstrated that Prp8 is ubiquitinated within the tri-snRNP ( xref )."
PRPF8 is methylated.
| 2
PRPF8 is methylated. 2 / 2
| 2

sparser
"There is no appreciable difference in Dnmt3a methylation activity on plasmids with and without Dcm methylation when the methylation sensitive enzyme HhaI is used to assess DNA methylation on p220.2 (Fig. xref , lanes 1 and 2)."

sparser
"Unmethylated p220.2 showed 50.8% methylation in the EBNA1 region 2, 36.3% methylation in the EBNA1 region 4, and 6.3% methylation in the EBNA1 region 6 (Fig. xref )."
EFTUD2 affects PRPF8
22 | 8 18
EFTUD2 binds PRPF8.
22 | 7 18
22 | 6 8

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sparser
"The HSP90/R2TP machinery binds unassembled cytoplasmic forms of PRPF8 and EFTUD2."

sparser
"To determine whether the interactions between R2TP and PRPF8 or EFTUD2 occur at an early cytoplasmic stage, we implemented a corecruitment assay using a fusion of RPAP3 with a fragment of p54, which targets the fusion protein to cytoplasmic P-bodies ( xref )."

sparser
"This indicated that EFTUD2 interacts with R2TP in the cytoplasm independently of PRPF8."

sparser
"SNRNP200 is a large nuclear protein of 200 kDa, which interacts extensively with U5-specific proteins EFTUD2 (hSnu114) and Prpf8."

sparser
"Collectively, our data confirm that interactions of the R2TP complex with PRPF8 and EFTUD2 occur early on in the cytoplasm and are independent of each other."

sparser
"We also identified several U5 chaperones such as AAR2, ZNHIT2, RUVBL1, RUVBL2, and ECD and a putative chaperone EAPP that has been shown to interact with U5 proteins PRPF8 and EFTUD2 xref , xref , xref ."

reach
"In the nucleus, PRPF8 is forming a complex with EFTUD2 and SNRNP200 (also known as BRR2) as part of the spliceosome."

reach
"To determine whether the interactions between R2TP and PRPF8 or EFTUD2 occur at an early cytoplasmic stage, we implemented a corecruitment assay using a fusion of RPAP3 with a fragment of p54, which targets the fusion protein to cytoplasmic P-bodies."
| 1 6

sparser
"Remarkably, the GFP-ZNHIT2 SILAC IP revealed a strong association of this factor with EFTUD2, PRPF8, and SNRNP200."

sparser
"Specifically, TSSC4 interacts with U5-specific proteins PRPF8, EFTUD2 and SNRNP200."

sparser
"Importantly, our results suggest that components of Complex B, and more specifically BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP complex [ xref ], phenocopy PRPF8 most strongly."

sparser
"AAR2, ZNHIT2, and the HSP90/R2TP complex associate with the U5-specific proteins EFTUD2, PRPF8, and SNRNP200."

sparser
"Similarly, in humans, yeast two-hybrid and in vitro binding assays have demonstrated physical interactions between EFTUD2, SNRNP200 and PRPF8 proteins ( xref , xref ), and these interactions have been confirmed by recent cryo-EM structures of the human U4/U6."

sparser
"Notably, depletion of the spliceosome components BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP [ xref ], most strongly phenocopy PRPF8 deficiency (Fig.  xref ; Additional file xref b, c)."

reach
"In addition to the PRPF8, EFTUD2, and SNRNP200 complex, our proteomics analysis as well as previous analyses found that SNW1 was in complex with another splicing subcomplex, PRP19 complex."
| 2

sparser
"Collectively, these data provide strong support for the idea that PRPF8 associates with EFTUD2 and AAR2 early in its assembly pathway."

sparser
"These results support the idea that PRPF8, AAR2, and EFTUD2 form an assembly intermediate in human cells and that some of the mutants are trapped at this stage."
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
R2TP binds PRPF8 and EFTUD2. 1 / 1
| 1

sparser
"Depletion of U5 proteins and PRPF8 RP mutation both increase the association of PRPF8 and EFTUD2 with R2TP."
EFTUD2 decreases the amount of PRPF8.
| 1
EFTUD2 decreases the amount of PRPF8. 1 / 1
| 1

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"EFTUD2′s roles during MRV infection are summarized in Figure 7B.We previously demonstrated that MRV reduces the protein levels of EFTUD2, PRPF8, and SNRNP200 through the action of the μ2 protein during infection [5]."
SNRNP200 affects PRPF8
17 | 10 19
17 | 9 12

sparser
"Furthermore, TSSC4 directly interacts with the SNRNP200 (U5 snRNP 200 kDa helicase) and the PRPF8 spliceosomal scaffold."

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sparser
"For example, pathogenic variants in PRPF8 and SNRNP200 were clustered in their interaction regions, where defects disrupted PRPF8SNRNP200 interactions. xref – xref Previously, situations similar to that of TOPORS have been reported in the RP1 gene, in which causative heterozygous truncating variants are only located in a specific region in the middle of the gene. xref – xref Regarding TOPORS , products resulting from pathogenic truncating variants located in the last exon and downstream of the SR/RS domain may escape nonsense-mediated mRNA decay (NMD) xref and reduce the activity of the wild-type allele via the dominant-negative effect."

No evidence text available

reach
"In the nucleus, PRPF8 is forming a complex with EFTUD2 and SNRNP200 (also known as BRR2) as part of the spliceosome."

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sparser
"In addition, a small but reproducible reduction of SNRNP200 and PRPF8 binding was also observed in the case of the Δ201–250 deletion mutant."

No evidence text available

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reach
"These Prp8-RP mutants directly affect U5 snRNP and tri-snRNP maturation (Boon et al. 2007), Brr2 helicase, and ATPase activities (Pena et al. 2007; Maeder et al. 2009; Mozaffari-Jovin et al. 2013), and yeast-two-hybrid interactions between Brr2, Prp8, and Snu114 (Table 1; Pena et al. 2007)."
| 1 6

sparser
"Remarkably, the GFP-ZNHIT2 SILAC IP revealed a strong association of this factor with EFTUD2, PRPF8, and SNRNP200."

sparser
"Specifically, TSSC4 interacts with U5-specific proteins PRPF8, EFTUD2 and SNRNP200."

sparser
"Importantly, our results suggest that components of Complex B, and more specifically BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP complex [ xref ], phenocopy PRPF8 most strongly."

sparser
"AAR2, ZNHIT2, and the HSP90/R2TP complex associate with the U5-specific proteins EFTUD2, PRPF8, and SNRNP200."

sparser
"Similarly, in humans, yeast two-hybrid and in vitro binding assays have demonstrated physical interactions between EFTUD2, SNRNP200 and PRPF8 proteins ( xref , xref ), and these interactions have been confirmed by recent cryo-EM structures of the human U4/U6."

sparser
"Notably, depletion of the spliceosome components BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP [ xref ], most strongly phenocopy PRPF8 deficiency (Fig.  xref ; Additional file xref b, c)."

reach
"In addition to the PRPF8, EFTUD2, and SNRNP200 complex, our proteomics analysis as well as previous analyses found that SNW1 was in complex with another splicing subcomplex, PRP19 complex."
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
PRPF8 affects AAR2
11 | 11 19
11 | 11 17

reach
"PRPF8 binding to R2TP and AAR2 chaperones was increased in the absence of PIH1D1, suggesting that the formation of the R2TP complex through PIH1D1 binding is important for the release of PRPF8 from R2TP and AAR2 [59]."

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sparser
"Despite the biochemical and structural evidence reported previously, which supports this switch, a caveat of our AAR2PRPF8 RH structure may be that the RH β-finger module makes crystal contacts with a neighboring symmetry-related RH β-finger module."

sparser
"In contrast, our observations of (i) human AAR2 failing to sequester the PRPF8 JM domain from SNRNP200 395–2136 and (ii) AAR2 concomitantly binding to a PRPF8 fragment encompassing the RH and JM domains and SNRNP200 395–2136 suggest that an equivalent, long-lived intermediate is not formed in the human system."

reach
"CK2α1 and SGK2 kinases can abrogate the interaction between the spliceosomal proteins AAR2 and PRPF8, and NEK6 kinase was found to mediate the estrogen receptor (ERα) interaction with 14-3-3 proteins."

sparser
"In the cytoplasm, PRPF8 forms a complex with AAR2, a protein required for the assembling of U5 snRNP that is replaced by the SNRNP200 helicase after PRPF8 is transported from the cytoplasm to the nucleus ( xref , xref )."

reach
"Nevertheless, the GFP-AAR2 IP purified only a few other U5 proteins, which is in agreement with the idea that AAR2 binds PRPF8 mostly before its association with U5 snRNA."

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| 2

sparser
"Collectively, these data provide strong support for the idea that PRPF8 associates with EFTUD2 and AAR2 early in its assembly pathway."

sparser
"These results support the idea that PRPF8, AAR2, and EFTUD2 form an assembly intermediate in human cells and that some of the mutants are trapped at this stage."
SNRNP40 affects PRPF8
18 |
18 |

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PRPF8 affects CD2BP2
14 | 2
14 | 2

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"The CD2BP2 ‘Hook’ (residues 64-123) bridges the PRP8 N-terminal (PRP8 ) and Large (PRP8 ) domains and binds a bent conformation of the regulatory PRP8 α-finger (Fig. 2b, c, Extended Data Fig. 4d)."

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"The CD2BP2 ‘Bundle’ would bind PRP8 and deliver the CD2BP2 GYF–DIM1 complex to the nearby PRP6 N-terminus, tethering DIM1 near its PRP8-binding site, which is occluded by the CD2BP2 ‘Hook’ (States II-IV) (Extended Data Fig. 4e)."
PRPF8 affects PRPF6
13 | 1 1
13 | 1 1

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sparser
"Because PRPF6 and hDib1 interact directly [19] , we determined whether luciferase activity was regenerated similarly by NO-PRPF6 and OC-U5-40K. When these reporter proteins were synthesized in vitro a[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

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"However, neither of the two Prpf8 aberrant mutations studied in this work affect the Prpf8 interaction with Prpf6 and Snrnp200 and snRNP maturations (Malinova et al, 2017, and Fig S1C)."

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PRPF8 affects DDX23
14 | 1
14 | 1

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sparser
"The N-terminal domain of PRPF8 interacts with the helicase DDX23 (linked to U1 snRNP), whereas its C-terminal domain Jab1 links the tri-snRNP nucleus to the SNRNP200 protein ( xref ; xref )."

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PRPF6 affects PRPF8
13 | 1 1
13 | 1 1

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sparser
"Because PRPF6 and hDib1 interact directly [19] , we determined whether luciferase activity was regenerated similarly by NO-PRPF6 and OC-U5-40K. When these reporter proteins were synthesized in vitro a[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

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"However, neither of the two Prpf8 aberrant mutations studied in this work affect the Prpf8 interaction with Prpf6 and Snrnp200 and snRNP maturations (Malinova et al, 2017, and Fig S1C)."

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DDX23 affects PRPF8
14 | 1
14 | 1

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sparser
"The N-terminal domain of PRPF8 interacts with the helicase DDX23 (linked to U1 snRNP), whereas its C-terminal domain Jab1 links the tri-snRNP nucleus to the SNRNP200 protein ( xref ; xref )."

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SART3 affects PRPF8
4 | 4 6
4 | 4 6

sparser
"At least two pieces of evidence provide support for the nuclear miR-10b maturation scenario: first, the finding of Ago2 and, more recently, of Dicer in the nucleus of specific cells, including glioma (Suppementary Fig. xref a) and [ xref , xref – xref ], and second, the co-IP of the spliceosomal SART3 and PRPF8 complexes with Ago2, the core endonucleolytic components of RISC that efficiently pools-down the entire miR-10b population from glioma cells."

reach
"At least two pieces of evidence provide support for the nuclear miR-10b maturation scenario: first, the finding of Ago2 and, more recently, of Dicer in the nucleus of specific cells, including glioma (Suppementary Fig. 5a) and [12, 56–58], and second, the co-IP of the spliceosomal SART3 and PRPF8 complexes with Ago2, the core endonucleolytic components of RISC that efficiently pools-down the entire miR-10b population from glioma cells."

reach
"Both U6 and miR-10b have been significantly enriched in the spliceosomal SART3 and PRPF8 complexes (Fig. 3a and Supplementary Fig. 4a, b)."

sparser
"These results indicate that miR-10b interferes with U6 incorporation into SART3 and PRPF8 snRNPs."

reach
"Furthermore, miR-10b- U6 chimeras have been detected in the cross-linked and ligated SART3 and PRPF8 complexes, similar to the Ago complexes (Fig. 3b) indicative of the miR-10b interaction with U6 snRNP in the splicing complex."

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sparser
"We further demonstrate that miR-10b modulates U6 N-6-adenosine methylation and pseudouridylation, U6 binding to splicing factors SART3 and PRPF8, and regulates U6 stability, conformation, and levels."

sparser
"Both U6 and miR-10b have been significantly enriched in the spliceosomal SART3 and PRPF8 complexes (Fig. xref a and Supplementary Fig. xref a, b)."
PRPF8 affects ECD
9 | 1 4
9 | 1 4

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"ZNHIT2, ECD, AAR2 and PRPF8 can form complexes with R2TP."

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sparser
"Such a role was consistent with our and others' findings that ECD associates with the core spliceosome scaffold protein PRPF8 ( xref )."

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sparser
"Notably, mammalian PRPF8 also interacts with ECD ( xref ), and another study found ECD, PRPF8, and R2TP subunits in a single complex ( xref )."

sparser
"Drosophila and human ECD proteins bind to PRPF8, an essential scaffolding component of the spliceosome machinery ( xref ), suggesting a role of ECD in splicing."

sparser
"The interaction of human ECD with human PRPF8 has been confirmed [ xref ]."

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SART1 affects PRPF8
11 | 2
11 | 2

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"To interrogate the functionality of the modeled interaction between SNU66, SNRP27, and PRP8, we used a CRISPR–cas9 system coupled with an oligonucleotide-directed recombination repair-based screen to randomize snu-66 at position H765 and prp-8 at position H1573, and screened for viable mutants.We initially recovered nine independent strains, with five different amino acid substitutions at snu-66 position H765; G, L, S, C, and T."

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"Meanwhile, circRNA-UBAP2 represses apoptosis and contributes to the proliferation of ovarian cancer by miR-382-5p/PRPF8 axis (Xu et al., 2020)."

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"In ovarian cancer, PRPF8 expression significantly promotes ovarian cancer cell proliferation and inhibits apoptosis through the circRNA-UBAP2/miR-382-5p/PRPF8 pathway [69]."

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"In Drosophila, loss of PRPF8 decreases cell proliferation, increases cell death and modulates cell differentiation and polarity, and PRPF8-mediated hyperplastic growth is induced by different oncogenes ."

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"Silencing PRPF8 significantly reduced cell proliferation at 24–72 h in all cell lines tested (Fig. 3c)."

reach
"Alterations of PRPF8 increase the proliferation of CD34+ primary bone marrow cells and of a myeloid cell line, as well as resulting in defects of the second step of the RNA splicing process [58]."

eidos
"( C ) The expression location of Prp8 was explored via immunofluorescence ( D ) CCK8 assay revealed that loss of Prp8 reduced cell proliferation ."

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"Indeed, in vitro PRPF8 silencing reduced the proliferation of different liver cancer cell lines through the modulation of important CDKs such as CDK2, reduced the migration capacity, and reduced the colony and tumorsphere formation capacity, all of which are important features related to the control of cancer stem cell viability and cancer progression."

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"We show that PRPF8 lesions lead to neomorphic spliceosomal activity and increased cellular proliferation resulting in a distinct phenotype of aggressive myeloid malignancies with increased RS."

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"CircRNA-UBAP2 can be used as a ceRNA of spongy miR-382-5p in ovarian cancer, increasing the expression level of PRPF8, promoting the proliferation of ovarian cancer cells, and inhibiting cell apoptosis (Xu et al., 2020)."

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"Consequently, circRNA-UBAP2 upregulated expression level of PRPF8 by sponged miR-382-5p acted as a ceRNA, promoted proliferation and inhibited apoptosis in ovarian cancer cells."

reach
"Unlike SF3B1, XREF_BIBR, XREF_BIBR PRPF8 knockdown leads to increased cellular proliferation and increased clonogenicity."
PRPF8 affects SART1
11 | 2
11 | 2

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reach
"To interrogate the functionality of the modeled interaction between SNU66, SNRP27, and PRP8, we used a CRISPR–cas9 system coupled with an oligonucleotide-directed recombination repair-based screen to randomize snu-66 at position H765 and prp-8 at position H1573, and screened for viable mutants.We initially recovered nine independent strains, with five different amino acid substitutions at snu-66 position H765; G, L, S, C, and T."

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PRPF31 affects PRPF8
5 | 7
PRPF31 binds PRPF8.
5 | 6
5 | 6

reach
"The interaction of PRP31 or PRP3 and the U5 snRNP component PRP8 is reported to be regulated by the ubiquitination and deubiquitination status of PRP31 and PRP3, which is required for efficient RNA sp[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

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reach
"In the spliceosome, ubiquitinated PRP3 and PRP31 bind PRP8 and stabilize the tri-snRNP complex [31] ."

reach
"These results indicated that PRP3 inhibits radioresistance at least in part due to promoting the production of FANCI‐12.2.6 PRP3 regulates FANCI alternative splicing by modulating the interaction between PRP31 and PRP8."

reach
"These observations indicated that PRP3 regulates FANCI alternative splicing by modulating the interaction between PRP31 and PRP8, the key components of complex B. Considering that PRP31 and PRP8 were downregulated in cells postradiation, these findings also demonstrate that PRP3 plays a functional role in the early step of cellular response to radiation.2.7 TXNL4B promotes radioresistance of lung cancer in vivo."

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reach
"In addition, we found that PRP3 knockdown weakened the interaction of PRP31 and PRP8, which are key components for the assembly of U4/U6.U5 tri‐snRNP; this, in turn, led to FANCI exon skipping."

reach
"Mechanistically, PRP3 knockdown leads to the unstabilized U4/U6.U5 tri‐snRNP postradiation though affecting the physical interaction of PRP31 and PRP8."
PRPF31 activates PRPF8.
| 1
PRPF31 activates PRPF8. 1 / 1
| 1

reach
"Ubiquitination of Prp31 increases its affinity for Prp8 and this PTM is reversed by USP15."
| PMC
SF3B4 affects PRPF8
5 | 4 2
5 | 4 2

reach
"In addition, physical interactions between RBM39 and SF3A1/2/3, SF3B4, PRPF8 and MBNL1 have also been reported (Figure 5A) (10,83)."

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reach
"A heatmap of the enrichment of snRNA-binding proteins showed validated patterns, with the specific binding of PRPF8 and SF3B4 to U4/5/6 and U2 snRNAs, respectively (Figure 5E)."

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reach
"Utilizing the publicly available GnomAD32 database, we replicate findings where regions with known RBP function are more likely to contain rare (minor allele frequency [MAF] < 0.1%) and disruptive (Δln(LR) < −0.5) variants (Figure 7C, Mann-Whitney test p < 0.001).33 For example, rare variants disrupting SF3B4 and PRPF8 binding are enriched in proximal introns near 5′ SS and 3′ SS, respectively, resonating with the known splice-site-defining function of both spliceosomal proteins."

reach
"To explore potential combinatorial binding between SF3B4 and PRPF8, the likelihood of dual binding was juxtaposed with other clusters, encompassing those with solitary binding from either RBP."

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sparser
"A heatmap of the enrichment of snRNA-binding proteins showed validated patterns, with the specific binding of PRPF8 and SF3B4 to U4/5/6 and U2 snRNAs, respectively ( xref E)."
PRPF8 affects PRPF31
5 | 6
5 | 6

reach
"The interaction of PRP31 or PRP3 and the U5 snRNP component PRP8 is reported to be regulated by the ubiquitination and deubiquitination status of PRP31 and PRP3, which is required for efficient RNA sp[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

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reach
"In the spliceosome, ubiquitinated PRP3 and PRP31 bind PRP8 and stabilize the tri-snRNP complex [31] ."

reach
"These results indicated that PRP3 inhibits radioresistance at least in part due to promoting the production of FANCI‐12.2.6 PRP3 regulates FANCI alternative splicing by modulating the interaction between PRP31 and PRP8."

reach
"These observations indicated that PRP3 regulates FANCI alternative splicing by modulating the interaction between PRP31 and PRP8, the key components of complex B. Considering that PRP31 and PRP8 were downregulated in cells postradiation, these findings also demonstrate that PRP3 plays a functional role in the early step of cellular response to radiation.2.7 TXNL4B promotes radioresistance of lung cancer in vivo."

No evidence text available

reach
"In addition, we found that PRP3 knockdown weakened the interaction of PRP31 and PRP8, which are key components for the assembly of U4/U6.U5 tri‐snRNP; this, in turn, led to FANCI exon skipping."

reach
"Mechanistically, PRP3 knockdown leads to the unstabilized U4/U6.U5 tri‐snRNP postradiation though affecting the physical interaction of PRP31 and PRP8."
PRPF8 affects PRPF3
6 | 2 3
6 | 2 2

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reach
"The interaction of PRP31 or PRP3 and the U5 snRNP component PRP8 is reported to be regulated by the ubiquitination and deubiquitination status of PRP31 and PRP3, which is required for efficient RNA sp[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

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reach
"The SNRNP200, PRPF8, PRPF3, and PRPF31 gene products are all triple-snRNP components, 15,31 and PAP1 binds PRPF3 to negatively regulate splicing, 32,49 suggesting a common mechanism for pathogenesis."

sparser
"It is interesting to note that the interaction of PRPF8 with ubiquitinated PRPF3 is regulated by the deubiquitinating enzyme USP4, and that loss of USP4 prevents the correct splicing of mRNAs including those for α-tubulin xref ."

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sparser
"As the second and third PE targets, we chose PRPF3 and PRPF8 associated with autosomal dominant (ad) forms of retinitis pigmentosa (RP) [ xref , xref ]."

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| 1

sparser
"Likewise, mutations in the snRNP components PRPF8, PRPF3, U2AF35, and SF3B1 cause diseases (e.g., retinitis pigmentosa for PRPF proteins, and myelodysplasia for U2AF35 and SF3B1) that are associated with broad changes in the production of splice variants (Chabot & Shkreta, xref )."
SNW1 affects PRPF8
7 | 1 1
7 | 1

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"Moreover, the clip of PRP2 replaced SNIP1 by interacting with the α3 helix of SKIP, whereas new interactions between PRP2 , SKIP and PRP8 replace those between BUD13 and SKIP in the B complex (Fig. 3a and Extended Data Fig. 4c,d)."

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SNW1 binds CWC15 and PRPF8. 1 / 1
| 1

sparser
"Finally, PPIG interacts with SNW1, CWC15, and PRPF8, all through the isomerase domain ( xref )."
PRPF19 affects PRPF8
8 | 1
PRPF19 binds PRPF8.
8 |
8 |

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PRPF19 ubiquitinates PRPF8.
| 1
PRPF19 ubiquitinates PRPF8. 1 / 1
| 1

sparser
"On the other hand, ubiquitination of PRP8 at the C-terminal by PRP19 was not as significant and PRP4B kinase and USP39 were not ubiquitinated by PRP19."
SNRNP200 affects EFTUD2
| 1 7
| 1 6

sparser
"Remarkably, the GFP-ZNHIT2 SILAC IP revealed a strong association of this factor with EFTUD2, PRPF8, and SNRNP200."

sparser
"Specifically, TSSC4 interacts with U5-specific proteins PRPF8, EFTUD2 and SNRNP200."

sparser
"Importantly, our results suggest that components of Complex B, and more specifically BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP complex [ xref ], phenocopy PRPF8 most strongly."

sparser
"AAR2, ZNHIT2, and the HSP90/R2TP complex associate with the U5-specific proteins EFTUD2, PRPF8, and SNRNP200."

sparser
"Similarly, in humans, yeast two-hybrid and in vitro binding assays have demonstrated physical interactions between EFTUD2, SNRNP200 and PRPF8 proteins ( xref , xref ), and these interactions have been confirmed by recent cryo-EM structures of the human U4/U6."

sparser
"Notably, depletion of the spliceosome components BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP [ xref ], most strongly phenocopy PRPF8 deficiency (Fig.  xref ; Additional file xref b, c)."

reach
"In addition to the PRPF8, EFTUD2, and SNRNP200 complex, our proteomics analysis as well as previous analyses found that SNW1 was in complex with another splicing subcomplex, PRP19 complex."
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
PRPF8 affects TP53
2 | 5 1
PRPF8 binds TP53.
2 | 1
2 | 1

sparser
"The association of TP53 and PRPF8 is of particular interest considering their genomic proximity (both mapping to 17p) and the appearance of RS in cases without SF3B1 mutations and high-risk features. xref When we performed a sub-analysis of RNA splicing and GE of patients with single PRPF8 (n = 34), SF3B1 (n = 281), and TP53 (n = 52) mutations, we found high covariance features for the alpha-globin ( HBA2 ) gene, which was previously shown to correlate with impaired erythrocyte maturation in SF3B1 mutant MDS. xref Furthermore, by applying gene set overrepresentation analysis to PRPF8 and TP53 mutants, we clustered the top five categories (FDR< 0.001) in erythrocytes differentiation (KLF1 and EPB42), homeostasis, and development (ALAS2, GATA1, RHAG, and SLC4A1) suggesting that these genes might inversely correlate with HBA2 expression and be responsible for the formation of RS in SF3B1 wild-type cases ( data not shown )."

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PRPF8 activates TP53.
| 3
PRPF8 activates TP53. 3 / 3
| 3

reach
"Strikingly, silencing of p53 rescues PRPF8 KD-induced apoptosis, indicating that PRPF8 KD triggers hESC apoptosis through activating the p53 pathway."

reach
"PRPF8 controls alternative splicing of PIRH2 to modulate the p53 pathway and survival of human ESCs."

reach
"In search for the mechanism by which p53 pathway is activated by PRPF8 KD, we find that PRPF8 KD alters alternative splicing of many genes, including PIRH2 which encodes an E3 ubiquitin ligase of p53."
PRPF8 inhibits TP53.
| 2
PRPF8 inhibits TP53. 2 / 2
| 2

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"PRPF8 knockdown (KD) induces p53 protein accumulation and activates the p53 pathway, leading to apoptosis in hESCs."

reach
"Mechanistically, loss of function mutations in zebrafishPRPF8 have been shown to result in missplicing of TP53, 36 while PRPF8 knockdown in mammalian cells led to increased compensatory transcriptional activity of TP53, 39 suggesting another possibility of synergetic interaction between PRPF8 defects and TP53."
PRPF8 affects PRPF19
8 |
8 |

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EFTUD2 affects SNRNP200
| 1 7
| 1 6

sparser
"Remarkably, the GFP-ZNHIT2 SILAC IP revealed a strong association of this factor with EFTUD2, PRPF8, and SNRNP200."

sparser
"Specifically, TSSC4 interacts with U5-specific proteins PRPF8, EFTUD2 and SNRNP200."

sparser
"Importantly, our results suggest that components of Complex B, and more specifically BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP complex [ xref ], phenocopy PRPF8 most strongly."

sparser
"AAR2, ZNHIT2, and the HSP90/R2TP complex associate with the U5-specific proteins EFTUD2, PRPF8, and SNRNP200."

sparser
"Similarly, in humans, yeast two-hybrid and in vitro binding assays have demonstrated physical interactions between EFTUD2, SNRNP200 and PRPF8 proteins ( xref , xref ), and these interactions have been confirmed by recent cryo-EM structures of the human U4/U6."

sparser
"Notably, depletion of the spliceosome components BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP [ xref ], most strongly phenocopy PRPF8 deficiency (Fig.  xref ; Additional file xref b, c)."

reach
"In addition to the PRPF8, EFTUD2, and SNRNP200 complex, our proteomics analysis as well as previous analyses found that SNW1 was in complex with another splicing subcomplex, PRP19 complex."
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
Rep affects PRPF8
6 | 1
6 |

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| 1

sparser
"A Jab1/MPN domain resides in the C-terminal region of PRPF8, which interacts with the SNRNP200 helicase to regulate U4/U6 snRNA duplex unwinding during B complex activation ( xref ; xref , xref ; xref )."
SNRPD2 affects PRPF8
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SLU7 affects PRPF8
4 | 2 1
SLU7 binds PRPF8.
4 | 1 1
4 | 1 1

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sparser
"Using sorted germ cells from Cwf19l2 ‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2 ‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure  xref )."

reach
"Using sorted germ cells from Cwf19l2‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure 6F)."

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SLU7 decreases the amount of PRPF8.
| 1
SLU7 decreases the amount of PRPF8. 1 / 1
| 1

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"Although the mRNA expression levels of Prpf8, Slu7, and Prpf43 did not significantly differ between Cwf19l2‐SKO and control mice (Figure 6D), immunoblotting revealed normal SLU7 expression, slightly reduced PRPF8 expression, and moderately reduced PRPF43 expression in Cwf19l2‐SKO testes at both PD6 and PD10 (Figure 6E; Figure S8A, Supporting Information)."
SERPINB2 affects PRPF8
2 1 | 2 2
2 1 | 2 2

sparser
"Co-immunoprecipitation experiments confirmed that PAI-2 could interact with PRPF8 in vivo."

reach
"Co-immunoprecipitation experiments confirmed that PAI-2 could interact with PRPF8 in vivo."

reach
"PAI-2 could bind PRPF8 C-terminal in both the inside and outside of nuclear."

sparser
"PAI-2 could bind PRPF8 C-terminal in both the inside and outside of nuclear."

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RPAP3 affects PRPF8
3 | 1 3
3 | 1 3

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sparser
"When ZNHIT2 is knocked out, the interactions between RPAP3-EFTUD2 and RPAP3-PRPF8 were absent [ xref ]."

reach
"This demonstrated that the interaction between PRPF8 and RPAP3 can take place in the cytoplasm and is independent of EFTUD2."

sparser
"This demonstrated that the interaction between PRPF8 and RPAP3 can take place in the cytoplasm and is independent of EFTUD2."

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sparser
"Hsp90 was also shown to mediate the interaction between PRPF8 and cytoplasmic RPAP3 [ xref ]."

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PRPF8 affects rep
6 | 1
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| 1

sparser
"A Jab1/MPN domain resides in the C-terminal region of PRPF8, which interacts with the SNRNP200 helicase to regulate U4/U6 snRNA duplex unwinding during B complex activation ( xref ; xref , xref ; xref )."
PRPF8 affects SNRPD2
7 |
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PRPF8 affects SERPINB2
2 1 | 2 2
2 1 | 2 2

sparser
"Co-immunoprecipitation experiments confirmed that PAI-2 could interact with PRPF8 in vivo."

reach
"Co-immunoprecipitation experiments confirmed that PAI-2 could interact with PRPF8 in vivo."

reach
"PAI-2 could bind PRPF8 C-terminal in both the inside and outside of nuclear."

sparser
"PAI-2 could bind PRPF8 C-terminal in both the inside and outside of nuclear."

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PRPF8 affects RPAP3
3 | 1 3
3 | 1 3

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sparser
"When ZNHIT2 is knocked out, the interactions between RPAP3-EFTUD2 and RPAP3-PRPF8 were absent [ xref ]."

reach
"This demonstrated that the interaction between PRPF8 and RPAP3 can take place in the cytoplasm and is independent of EFTUD2."

sparser
"This demonstrated that the interaction between PRPF8 and RPAP3 can take place in the cytoplasm and is independent of EFTUD2."

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sparser
"Hsp90 was also shown to mediate the interaction between PRPF8 and cytoplasmic RPAP3 [ xref ]."

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PRPF8 affects PRPF4
7 |
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PRPF8 affects MT-ATP6
| 1 4 2
PRPF8 activates MT-ATP6.
| 1 4
PRPF8 activates MT-ATP6. 5 / 5
| 1 4

reach
"Thus, myelinosomes called “membrane swirls” were found in cone photoreceptors of a rodent model of RP caused by the mutation in PRPC8 gene (encoding the pre-mRNA processing factor 8 that is the homolog of yeast Prp8) (To et al., 2004)."

eidos
"Interestingly , while Snu114p / EFTUD2 interacts with both Brr2p / SNRNP200 and Prp8p / PRPF8 , EFTUD2 is associated with a craniofacial phenotype while SNRNP200 and PRPF8 both cause RP ( Figure 1 ) ."

reach
"The spliceosome is composed of 5 small nuclear RNAs (snRNAs), U1–U5, and many proteins including pre-mRNA splicing factors PRPF3, PRPF4, PRPF6, PRPF8, and SNRNP200, all of which are also genetic causes of RP (Ruzickova and Stanek, 2016)."

reach
"Several of the RP-causing PRPF8 missense mutations have been recapitulated in model organisms."

reach
"PRPF8-mediated RP is a result of ciliary dysfunctioning."
PRPF8 binds MT-ATP6.
| 2
| 2

sparser
"Thus the Prp8p-Aar2p complex that accumulates in the prp8-rp mutants is nuclear and therefore, unlike the situation with ΔNLS-Prp8p, has the possibility to interact with Brr2p but does so with reduced efficiency as a consequence of the poor association of Brr2p with Prp8-rp mutant proteins."

sparser
"Compared to wild-type Prp8p ( xref ), the Prp8-rp mutant proteins were associated with less Brr2p ( xref , lanes 1-7) and with more Aar2p ( xref , lanes 9-13)."
PRPF8 affects EAPP
7 |
7 |

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PRPF8 affects CDC5L
7 |
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PRPF8 affects BCAS2
7 |
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PRPF4 affects PRPF8
7 |
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EFTUD2 affects PRPF8, and SNRNP200
| 1 6
| 1 6

sparser
"Remarkably, the GFP-ZNHIT2 SILAC IP revealed a strong association of this factor with EFTUD2, PRPF8, and SNRNP200."

sparser
"Specifically, TSSC4 interacts with U5-specific proteins PRPF8, EFTUD2 and SNRNP200."

sparser
"Importantly, our results suggest that components of Complex B, and more specifically BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP complex [ xref ], phenocopy PRPF8 most strongly."

sparser
"AAR2, ZNHIT2, and the HSP90/R2TP complex associate with the U5-specific proteins EFTUD2, PRPF8, and SNRNP200."

sparser
"Similarly, in humans, yeast two-hybrid and in vitro binding assays have demonstrated physical interactions between EFTUD2, SNRNP200 and PRPF8 proteins ( xref , xref ), and these interactions have been confirmed by recent cryo-EM structures of the human U4/U6."

sparser
"Notably, depletion of the spliceosome components BRR2 and EFTUD2, which interact directly with PRPF8 to form the U5 snRNP [ xref ], most strongly phenocopy PRPF8 deficiency (Fig.  xref ; Additional file xref b, c)."

reach
"In addition to the PRPF8, EFTUD2, and SNRNP200 complex, our proteomics analysis as well as previous analyses found that SNW1 was in complex with another splicing subcomplex, PRP19 complex."
EAPP affects PRPF8
7 |
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CDC5L affects PRPF8
7 |
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BCAS2 affects PRPF8
7 |
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Bisphenol A affects PRPF8
6 |
Bisphenol A increases the amount of PRPF8.
4 |
Bisphenol A increases the amount of PRPF8. 4 / 4
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Bisphenol A decreases the amount of PRPF8.
2 |
Bisphenol A decreases the amount of PRPF8. 2 / 2
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TXNL4A affects PRPF8
4 | 2
4 | 2

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reach
"In the U4/U6.U5 tri-snRNP, DIM1 binds similar PRP8 and PRP8 interfaces as the CD2BP2 ‘Hook’ in the U5 snRNP (Fig. 2d)."

reach
"However, DIM1 binds an altered conformation of the PRP8 α-finger in the U4/U6.U5 tri-snRNP, which forms an extended α-helix (Fig. 2e)."

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TSSC4 affects PRPF8
6 |
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SRRM2 affects PRPF8
3 | 3
3 | 3

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sparser
"FBN2-FLNA , PRPF8-SRRM2 , and SRRM2-MKI67 all have positive patch correlation."

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sparser
"When comparing the patch correlation of both cell populations, both SRRM2-PRPF8 and IGF2R-PRPF8 pairs show significant differences ( xref E)."

sparser
"Module M1 includes gene pairs whose protein products are known to interact, e.g., FASN-SPTBN1 xref and PRPF8-SRRM2 xref , xref ."
SNRPE affects PRPF8
6 |
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SNRPB affects PRPF8
6 |
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SF3B2 affects PRPF8
6 |
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| 6
| 4

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"In ovarian cancer, PRPF8 expression significantly promotes ovarian cancer cell proliferation and inhibits apoptosis through the circRNA-UBAP2/miR-382-5p/PRPF8 pathway [69]."

reach
"CircRNA-UBAP2 can be used as a ceRNA of spongy miR-382-5p in ovarian cancer, increasing the expression level of PRPF8, promoting the proliferation of ovarian cancer cells, and inhibiting cell apoptosis (Xu et al., 2020)."

reach
"Consequently, circRNA-UBAP2 upregulated expression level of PRPF8 by sponged miR-382-5p acted as a ceRNA, promoted proliferation and inhibited apoptosis in ovarian cancer cells."

reach
"Knockdown of pan-cancer drivers PRPF8 caused cell apoptosis in breast cancer, which dedicated that PRPF8 is a proto-oncogene regulating cell viability [10]."
| 2

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"Strikingly, silencing of p53 rescues PRPF8 KD-induced apoptosis, indicating that PRPF8 KD triggers hESC apoptosis through activating the p53 pathway."

reach
"Expression of pathogenic PRPF8 variants responsible for retinitis pigmentosa induced apoptosis [61]."
PRPF8 affects TXNL4A
4 | 2
4 | 2

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reach
"In the U4/U6.U5 tri-snRNP, DIM1 binds similar PRP8 and PRP8 interfaces as the CD2BP2 ‘Hook’ in the U5 snRNP (Fig. 2d)."

reach
"However, DIM1 binds an altered conformation of the PRP8 α-finger in the U4/U6.U5 tri-snRNP, which forms an extended α-helix (Fig. 2e)."

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PRPF8 affects TSSC4
6 |
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PRPF8 affects SRRM2
3 | 3
3 | 3

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sparser
"FBN2-FLNA , PRPF8-SRRM2 , and SRRM2-MKI67 all have positive patch correlation."

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sparser
"When comparing the patch correlation of both cell populations, both SRRM2-PRPF8 and IGF2R-PRPF8 pairs show significant differences ( xref E)."

sparser
"Module M1 includes gene pairs whose protein products are known to interact, e.g., FASN-SPTBN1 xref and PRPF8-SRRM2 xref , xref ."
PRPF8 affects SNRPE
6 |
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PRPF8 affects SNRPB
6 |
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PRPF8 affects SLU7
4 | 1 1
4 | 1 1

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sparser
"Using sorted germ cells from Cwf19l2 ‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2 ‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure  xref )."

reach
"Using sorted germ cells from Cwf19l2‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure 6F)."

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PRPF8 affects SF3B2
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PRPF8 affects CCP110
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PRPF8 activates CCP110.
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PRPF8 activates CCP110. 4 / 4
| 4

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"PRPF8 promotes CP110 removal to initiate ciliogenesis by binding to the linear ubiquitin chains."

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"Subsequently, PRPF8 at the distal end of the mother centriole interacts with the linear ubiquitin chains of CP110 and promotes the removal of CP110 from the mother centriole, thus initiating ciliogenesis (Fig. 7 G)."

reach
"At the beginning of ciliogenesis, PRPF8 serves as the receptor for linear ubiquitin chains of CP110 and disappears from the mother centriole to promote CP110 removal."

reach
"Strikingly, depletion of PRPF8 in RPE-1 cells dramatically suppressed CP110 removal from the mother centrioles after serum starvation and significantly inhibited ciliogenesis (Fig. 5, C–E; and Fig. S5 C)."
PRPF8 binds CCP110.
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| 1 1

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"Thus, LUBAC-catalyzed linear ubiquitin chains construct a CP110PRPF8 complex in which PRPF8 takes CP110 away from the mother centriole to promote ciliogenesis."

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"Thus, LUBAC-catalyzed linear ubiquitin chains construct a CP110PRPF8 complex in which PRPF8 takes CP110 away from the mother centriole to promote ciliogenesis."
PRPF8 affects AR
3 | 2 1
PRPF8 binds AR.
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3 | 1 1

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sparser
"PRPF8 interacts with the androgen receptor, regulating its function in prostate cancer cells and controlling its transcriptional activity."

reach
"Splicing Factor Prp8 Interacts With NES (AR) and Regulates Androgen Receptor in Prostate Cancer Cells."

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PRPF8 ubiquitinates AR.
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PRPF8 leads to the ubiquitination of AR. 1 / 1
| 1

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"As an evidence, the downregulation of Prp8 is reported to increase the nuclear enrichment of AR tagged with GFP, decrease its transcriptional activity, and enhance the polyubiquitination of AR [85] ."
NPAT affects PRPF8
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NPAT phosphorylates PRPF8. 6 / 6
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"Despite only partial conservation of the C-terminus, both human and mouse p57 KIP2 are similarly effective in blocking p220 NPAT phosphorylation ( xref )."

sparser
"Hence, our data suggest that the selective ability of human p57 KIP2 to prevent p220 NPAT phosphorylation is mediated in part by its unique C-terminus."

sparser
"Both human and mouse wild type proteins are equally effective in blocking p220 NPAT phosphorylation ( xref )."

sparser
"We tested the specificity of p57 KIP2 to block p220 NPAT phosphorylation at subnuclear foci using p57 KIP2 mutants ( xref )."

sparser
"The data indicate that p220 NPAT phosphorylation may occur despite a reduction in cellular CDK kinase activity upon elevation of p21 CIP1/WAF1 levels."

sparser
"Our data suggest that p57 KIP2 is more effective in blocking p220 NPAT phosphorylation in situ than the other two CKIs."
DHX15 affects PRPF8
3 | 2 1
DHX15 binds PRPF8.
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3 | 1 1

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sparser
"Using sorted germ cells from Cwf19l2 ‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2 ‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure  xref )."

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reach
"Using sorted germ cells from Cwf19l2‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure 6F)."
DHX15 increases the amount of PRPF8.
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DHX15 increases the amount of PRPF8. 1 / 1
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"Although the mRNA expression levels of Prpf8, Slu7, and Prpf43 did not significantly differ between Cwf19l2‐SKO and control mice (Figure 6D), immunoblotting revealed normal SLU7 expression, slightly reduced PRPF8 expression, and moderately reduced PRPF43 expression in Cwf19l2‐SKO testes at both PD6 and PD10 (Figure 6E; Figure S8A, Supporting Information)."
USP39 affects PRPF8
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TP53 affects PRPF8
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TP53 binds PRPF8.
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sparser
"The association of TP53 and PRPF8 is of particular interest considering their genomic proximity (both mapping to 17p) and the appearance of RS in cases without SF3B1 mutations and high-risk features. xref When we performed a sub-analysis of RNA splicing and GE of patients with single PRPF8 (n = 34), SF3B1 (n = 281), and TP53 (n = 52) mutations, we found high covariance features for the alpha-globin ( HBA2 ) gene, which was previously shown to correlate with impaired erythrocyte maturation in SF3B1 mutant MDS. xref Furthermore, by applying gene set overrepresentation analysis to PRPF8 and TP53 mutants, we clustered the top five categories (FDR< 0.001) in erythrocytes differentiation (KLF1 and EPB42), homeostasis, and development (ALAS2, GATA1, RHAG, and SLC4A1) suggesting that these genes might inversely correlate with HBA2 expression and be responsible for the formation of RS in SF3B1 wild-type cases ( data not shown )."

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TP53 inhibits PRPF8.
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TP53 inhibits PRPF8. 2 / 2
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"For correct determination of the IPSS-R score FISH for MECOM rearrangements should be included.OTHER RECURRENT FOCAL COPY NUMBER ABNORMALITIES IN MDSGenetic abnormalityNF1 loss RUNX1 loss RASSF1 loss CCND1 loss TET2 loss DNMT3A loss HRAS loss PDGFRA loss FIP1L1 loss ASXL1 loss ETV6 loss EZH2 loss KRAS loss NCOR2 loss NPM1 loss PRPF8 loss TP53 lossPrognostic impact not known locusReference17q11 21q22 3p21 11q13 4q24 2p23 11p15 4q12 4q12 20q11 12p13 7q36 12p12 12q24 5q35 17p13 17p13 (Kolquist et al., 2011; Haferlach et al., 2014) (Kolquist et al., 2011; Thiel et al., 2011; Haferlach et al., 2014) (Kolquist et al., 2011) (Kolquist et al., 2011) (Kolquist et al., 2011; Thiel et al., 2011; Haferlach et al., 2014) (Kolquist et al., 2011) (Kolquist et al., 2011; Haferlach et al., 2014) (Kolquist et al., 2011) (Kolquist et al., 2011) (Haferlach et al., 2014) (Haferlach et al., 2014) (Haferlach et al., 2014) (Haferlach et al., 2014) (Haferlach et al., 2014) (Haferlach et al., 2014) (Haferlach et al., 2014) (Haferlach et al., 2014) Genes, Chromosomes & Cancer DOI 10.1002/gcc ARRAY GUIDELINES FOR HAEMATOLOGICAL NEOPLASIA489REFERENCESAffer M, Chesi M, Chen WD, Keats JJ, Demchenko YN, Tamizhmani K, Garbitt VM, Riggs DL, Brents LA, Roschke AV, Van Wier S, Fonseca R, Bergsagel PL, Kuehl WM. 2014."

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"Strikingly, silencing of p53 rescues PRPF8 KD-induced apoptosis, indicating that PRPF8 KD triggers hESC apoptosis through activating the p53 pathway."
SNRPF affects PRPF8
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SNRPD3 affects PRPF8
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SF3B1 affects PRPF8
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"Likewise, mutations in the snRNP components PRPF8, PRPF3, U2AF35, and SF3B1 cause diseases (e.g., retinitis pigmentosa for PRPF proteins, and myelodysplasia for U2AF35 and SF3B1) that are associated with broad changes in the production of splice variants (Chabot & Shkreta, xref )."
SF3A1 affects PRPF8
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RUVBL2 affects PRPF8
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RNF113A affects PRPF8
1 | 4
RNF113A activates PRPF8.
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RNF113A activates PRPF8. 3 / 3
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"Cwc24 modulates the interaction of Prp8 with the 5' splice site."

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"Nevertheless, Prp8 crosslinking was more specific in the presence of Cwc24 (lane 8), and spread through positions -3 to -9 in the absence of Cwc24 (lane 7) (tracing of lanes 7 and 8 shown in Supplementary Figure S2), suggesting that Cwc24 may promote specific interactions of Prp8 with the 5′ splice site.Interestingly, our previous study demonstrated that Prp8 and Cwc24 displayed major crosslinks at positions +1 and +2 of the 5′ splice site on post-activation spliceosomes (32)."

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"The absence of NTC or Cwc24 allows Prp8 to interact immediately with the 5′ splice site upon the release of U4, but results in mislocalization of U5 and U6 on the 5′ splice site.A model for how Cwc24 may mediate formation of the RNA catalytic core through Prp2-mediated spliceosome remodeling is presented in Figure 8. Upon the release of U4, Cwc24 may bind onto the 5′ splice site immediately upon the binding of NTC, with its ZF-domain contacting the +1 and +2 positions of the intron."
RNF113A inhibits PRPF8.
| 1
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"Interestingly, Prp8 was not detected to crosslink to the 5′ splice site on the Cwc24-associated spliceosomes, except for rather weak crosslinks at the -5 and -6 positions, indicating that the presence of Cwc24 prevents Prp8 from contacting the 5′ splice site on activated spliceosomes."
RNF113A binds PRPF8.
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RBM22 affects PRPF8
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sparser
"This is in agreement with the association of PRPF8 and RBM22 with intron lariats as part of the human catalytic step I spliceosome xref ."

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"BEDtools also cannot show regions of unfavorable binding (the correlation is always positive) or differentiate between upstream and downstream binding geometries.The resolution limit of BEDtools is apparent when observing the binding of PRPF8, RBM22, U2AF2, and BUD13: PRPF8 and RBM22 appear to bind close to each other and U2AF2 and BUD13 bind close to each other as expected (Figures S8H and S8I); however, there is minimal difference in the correlation of U2AF2 with BUD13 versus U2AF2 with PRPF8 or RBM22 (Figure S8I), even though PRPF8 and RBM22 are known to generally bind further from U2AF2 than BUD13."

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sparser
"At 5’ SSs, RBM22 and PRPF8 were bound at the exonic end, which has been shown to be critical for splicesome assembly [ xref , xref ]."
R2TP affects PRPF8
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R2TP binds PRPF8. 4 / 4
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"PRPF8 also associates with R2TP mostly by the direct interaction with the RUVBL1–RUVBL2 complex, but the in vitro pull-down experiments and the mass spectrometry in cells suggest that RPAP3-PIH1D1 also contributes to bring PRPF8 to the R2TP complex."

sparser
"We then analyzed if PRPF8 could also interact with the other components of R2TP using the same methodology PRPF8 interacted directly with RPAP3-PIH1D1 in the presence and absence of RUVBL1–RUVBL2 (Figure xref , top panels, xref ) and this was confirmed when pulling down from GST-RPAP3 pull-down (Figure xref , bottom panels)."

sparser
"PRPF8 can interact with R2TP without the help of any additional factor, at least in vitro ."

sparser
"S2118F and H2309R mutations both increased the association of PRPF8 with R2TP ( xref ) and also with ZNHIT2 ( xref )."
R2TP binds PRPF8 and EFTUD2. 1 / 1
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"Depletion of U5 proteins and PRPF8 RP mutation both increase the association of PRPF8 and EFTUD2 with R2TP."
3 | 1 1
PRPF8 binds.
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"In addition, we found increased binding of PRPF8 to C/D and H/ACA box snoRNAs in RP13 retinal cells."

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PRPF8 translocates.
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PRPF8 translocates to the membrane. 1 / 1
| 1

sparser
"Besides the loss-of-function approaches, transfection experiments showed that pEP84R is able to recruit pp220 to perinuclear ER and Golgi membranes, where pEP84R preferentially targets."
PRPF8 affects cell death
| 5
PRPF8 activates cell death.
| 3
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"In Drosophila, loss of PRPF8 decreases cell proliferation, increases cell death and modulates cell differentiation and polarity, and PRPF8-mediated hyperplastic growth is induced by different oncogenes ."

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"Knockdown of c-MYC attenuated cell death caused by depletion of PRPF8 or SF3B1 in SCCRDEBMet cells and depletion of PRPF8 in SCCRDEB4 cells."

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"Knockdown of SF3B1, PRPF8, UBL5 and USP39 increased cell death in all cSCC cell lines."
PRPF8 inhibits cell death.
| 2
| 2

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"Our results support these findings, as depleting PRPF8 led to enhanced annexin V staining (Figure 2B) and enhanced cell death (Figure 2C) in uninfected cells."

reach
"In colorectal cancer, Abdel-Wahab et al. demonstrated that silencing PRPF8 in DLD1 colon cancer cells led to cell death, indicating that PRPF8 regulates both cell growth and apoptosis in colorectal cancer [51]."
PRPF8 affects USP39
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PRPF8 affects SNRPF
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PRPF8 affects SNRPD3
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PRPF8 affects SF3B1
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| 1

sparser
"Likewise, mutations in the snRNP components PRPF8, PRPF3, U2AF35, and SF3B1 cause diseases (e.g., retinitis pigmentosa for PRPF proteins, and myelodysplasia for U2AF35 and SF3B1) that are associated with broad changes in the production of splice variants (Chabot & Shkreta, xref )."
PRPF8 affects SF3A1
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PRPF8 affects RUVBL2
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PRPF8 affects RBM22
2 | 1 2
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sparser
"This is in agreement with the association of PRPF8 and RBM22 with intron lariats as part of the human catalytic step I spliceosome xref ."

reach
"BEDtools also cannot show regions of unfavorable binding (the correlation is always positive) or differentiate between upstream and downstream binding geometries.The resolution limit of BEDtools is apparent when observing the binding of PRPF8, RBM22, U2AF2, and BUD13: PRPF8 and RBM22 appear to bind close to each other and U2AF2 and BUD13 bind close to each other as expected (Figures S8H and S8I); however, there is minimal difference in the correlation of U2AF2 with BUD13 versus U2AF2 with PRPF8 or RBM22 (Figure S8I), even though PRPF8 and RBM22 are known to generally bind further from U2AF2 than BUD13."

No evidence text available
| 1

sparser
"At 5’ SSs, RBM22 and PRPF8 were bound at the exonic end, which has been shown to be critical for splicesome assembly [ xref , xref ]."
PRPF8 affects R2TP
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R2TP binds PRPF8. 4 / 4
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sparser
"PRPF8 also associates with R2TP mostly by the direct interaction with the RUVBL1–RUVBL2 complex, but the in vitro pull-down experiments and the mass spectrometry in cells suggest that RPAP3-PIH1D1 also contributes to bring PRPF8 to the R2TP complex."

sparser
"We then analyzed if PRPF8 could also interact with the other components of R2TP using the same methodology PRPF8 interacted directly with RPAP3-PIH1D1 in the presence and absence of RUVBL1–RUVBL2 (Figure xref , top panels, xref ) and this was confirmed when pulling down from GST-RPAP3 pull-down (Figure xref , bottom panels)."

sparser
"PRPF8 can interact with R2TP without the help of any additional factor, at least in vitro ."

sparser
"S2118F and H2309R mutations both increased the association of PRPF8 with R2TP ( xref ) and also with ZNHIT2 ( xref )."
R2TP binds PRPF8 and EFTUD2. 1 / 1
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"Depletion of U5 proteins and PRPF8 RP mutation both increase the association of PRPF8 and EFTUD2 with R2TP."
PRPF8 affects PCBP1
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PRPF8 affects MYC
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PRPF8 affects DHX15
3 | 1 1
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sparser
"Using sorted germ cells from Cwf19l2 ‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2 ‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure  xref )."

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reach
"Using sorted germ cells from Cwf19l2‐SKO and control mice, co‐IP assays showed PRPF8 specifically co‐precipitated with both PRPF43 and SLU7 in controls, while in Cwf19l2‐SKO mice, the interaction between PRPF8 and SLU7 was detectable, but the interaction between PRPF8 and PRPF43 was barely noticeable (Figure 6F)."
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"Downregulation of PRPF8 promoted increased cell viability, proliferation, and clonogenicity of K-562 chronic myelogenous cells (CML) supporting PRPF8 as a tumor suppressor."

eidos
"Upregulation of Prp8 promoted cell viability and migration in a human hepatic astrocyte line ."

eidos
"Functionally , the loss of Prp8 may specifically inhibit cell viability and metastasis and activated EMT and PI3K / Akt in HCC cells ."

eidos
"The upregulation of Prp8 promoted cell viability , metastasis and the activity of the PI3K / Akt pathway in hepatic astrocytes cells and HCC cells ."

eidos
"Upregulation of Prp8 promoted cell viability and migration in HCC cells ."
PCBP1 affects PRPF8
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MYC affects PRPF8
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AR affects PRPF8
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sparser
"PRPF8 interacts with the androgen receptor, regulating its function in prostate cancer cells and controlling its transcriptional activity."

reach
"Splicing Factor Prp8 Interacts With NES (AR) and Regulates Androgen Receptor in Prostate Cancer Cells."

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Sodium arsenite increases the amount of PRPF8.
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Sodium arsenite increases the amount of PRPF8. 2 / 2
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Sodium arsenite decreases the amount of PRPF8.
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Sodium arsenite decreases the amount of PRPF8. 2 / 2
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Cisplatin affects PRPF8
| 4
Cisplatin binds PRPF8.
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"A likewise interaction has also been found in Prp8-cisplatin complex [ 97 ]."

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"Mass spectrometric analysis unequivocally supported the previous data and ruled out the role of TCEP in cisplatin interaction with prp8 intein."

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"Similar to RecA-cisplatin complex, two cisplatin molecules in a completely dissociated form in the Prp8-cisplatin complex were found [ 64 , 97 ]."
Cisplatin inhibits PRPF8.
| 1
| 1

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"Cisplatin also inhibits the C. neoformans Prp8 intein splicing with IC 50 of 2.5 µM in an in vitro splicing assay based on split Renilla luciferase; and the MIC 90 was 4.5-20 μg/ml in various strains of C. neoformans and C. gattii ."
ZNHIT2 affects PRPF8
3 | 1
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"ZNHIT2, ECD, AAR2 and PRPF8 can form complexes with R2TP."

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WDR83 affects PRPF8
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SNRPD1 affects PRPF8
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SHOX affects PRPF8
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"Prp8 then binds to the 3′SS while retaining interaction with the 5′-exon for exon ligation."

reach
"Our results show that Prp8 directly binds over the 5′SS and the BS during the first catalytic step, and over the 5′SS and 3′SS during the second step."

reach
"For pre-mRNA transcripts, PRPF8 preferentially bound to the 5’SS of pre-mRNA transcripts, consistent with previous work , but weak 5’SS were more affected by the PRPF8 p.H2309P mutation in retinal cells."

reach
"Interestingly, changes in PRPF8 binding to the affected exons with weak 5’SS were sequence-dependent (i.e., downregulated exons were cytidine-rich and upregulated exons were thymidine-rich)."
SF3B3 affects PRPF8
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RUVBL1 affects PRPF8
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PRPF8 affects prp16-302
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PRPF8 inhibits prp16-302. 4 / 4
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"This allowed us to analyze combinations of prp8 and U6 alleles that individually suppress prp16-302 defects to establish if they act by the same or distinct mechanisms."

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"We carried out a genetic screen for prp8 alleles within the Prp8 N-terminal domain that suppress cs defects of prp16-302."

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"Each of the prp8 alleles suppresses prp16-302 defects (Fig. 4E) to a different extent, with K603I and K611I/T exerting the strongest suppression."

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"Only a combination of T589P + K611I alleles does not follow this pattern as they act additively both for suppression of prp16-302 defects (Supplemental Fig. S1A) and for ts growth phenotypes (Supplemental Fig. S1B), consistent with their partial allele status.Together, we identified multiple alleles of cwc2, U6, and prp8 that suppress defects of prp16-302 and thus facilitate the first-to-second steps transition."
PRPF8 affects ZNHIT2
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"ZNHIT2, ECD, AAR2 and PRPF8 can form complexes with R2TP."

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PRPF8 affects WDR83
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PRPF8 affects SNRPD1
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PRPF8 affects SHOX
| 4
| 4

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"Prp8 then binds to the 3′SS while retaining interaction with the 5′-exon for exon ligation."

reach
"Our results show that Prp8 directly binds over the 5′SS and the BS during the first catalytic step, and over the 5′SS and 3′SS during the second step."

reach
"For pre-mRNA transcripts, PRPF8 preferentially bound to the 5’SS of pre-mRNA transcripts, consistent with previous work , but weak 5’SS were more affected by the PRPF8 p.H2309P mutation in retinal cells."

reach
"Interestingly, changes in PRPF8 binding to the affected exons with weak 5’SS were sequence-dependent (i.e., downregulated exons were cytidine-rich and upregulated exons were thymidine-rich)."
PRPF8 affects SF3B3
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PRPF8 affects RUVBL1
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PRPF8 affects PRP8
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| 2

sparser
"Thus, one major function of YJU2 and ISY1 is to stabilize the position of the U2/BS helix, which may still be flexible even after interacting with its PRP8 scaffold."

sparser
"K63-linked ubiquitylation of PRP31 by PRP19 regulates its association with PRP8 and the U5 snRNP."
| 2

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"Thus the Prp8p-Aar2p complex that accumulates in the prp8-rp mutants is nuclear and therefore, unlike the situation with ΔNLS-Prp8p, has the possibility to interact with Brr2p but does so with reduced efficiency as a consequence of the poor association of Brr2p with Prp8-rp mutant proteins."

sparser
"Compared to wild-type Prp8p ( xref ), the Prp8-rp mutant proteins were associated with less Brr2p ( xref , lanes 1-7) and with more Aar2p ( xref , lanes 9-13)."
PRPF8 affects PRP4K
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PRPF8 affects PLIN2
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PRPF8 activates PLIN2. 4 / 4
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"PRPF8 C-terminal mutations cause an early onset and severe form of adRP, and structural analysis of this region shows that it inserts into the RNA binding tunnel of the SNRNP200 helicase."

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"Relevant to both these interpretations is the observation that adRP linked to chromosome 17p is caused by mutations in PRPC8 (McKie et al., 2001), the human ortholog of yeast splicing factor Prp8p (Br[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

reach
"In addition, both truncation and missense mutations in PRPF8 have been reported to cause adRP, but the pathogenicity of missense mutations in PRPF8 is suspicious in some cases since missense variants in PRPF8 are common based on the gnomAD database; rare damaging variants in PRPF8 had a sum allele frequency of 2.17 × 10 (614/282896), which is higher than the prevalence of RP (1/3000)."

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"Nine mutations, six of which are novel, in the pre-mRNA splicing-factor genes PRPF3, PRPF8, and PRPF31, causing adRP have been identified in the Spanish population."
PRPF8 affects GCFC2
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3 | 1

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"Specifically, the TFIP11–GCFC2 dimer interacts with SKIP (scPrp45), while GCFC2 directly binds to PRP8, blocking the recruitment of the RNA helicases DHX16 (scPrp2), DHX38 (scPrp16) and DHX8 (scPrp22), all of which are needed for further splicing progression (Supplementary information, Fig. S10c, d)."

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PRPF8 affects DHX9
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PRPF8 affects CRNKL1
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PRPF8 affects C9orf78
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PRPF8 affects Bloc1s3
| 2 2
PRPF8 binds Bloc1s3.
| 2
| 2

sparser
"Thus the Prp8p-Aar2p complex that accumulates in the prp8-rp mutants is nuclear and therefore, unlike the situation with ΔNLS-Prp8p, has the possibility to interact with Brr2p but does so with reduced efficiency as a consequence of the poor association of Brr2p with Prp8-rp mutant proteins."

sparser
"Compared to wild-type Prp8p ( xref ), the Prp8-rp mutant proteins were associated with less Brr2p ( xref , lanes 1-7) and with more Aar2p ( xref , lanes 9-13)."
PRPF8 activates Bloc1s3.
| 2
PRPF8 activates Bloc1s3. 2 / 2
| 2

reach
"For example, a previous study suggested that mutations in PRPF8 may cause RP by disrupting the nuclear association of Brr2p with the U5 snRNP and, consequently, the assembly of the triple snRNP."

reach
"Herein, we sought to correlate the retinal cell-type-specific disease phenotype with the splicing profile shown by a patient with autosomal recessive RP, caused by a mutation in pre-mRNA splicing factor 8 (PRPF8)."
PRP8 affects PRPF8
| 4
| 2

sparser
"Thus, one major function of YJU2 and ISY1 is to stabilize the position of the U2/BS helix, which may still be flexible even after interacting with its PRP8 scaffold."

sparser
"K63-linked ubiquitylation of PRP31 by PRP19 regulates its association with PRP8 and the U5 snRNP."
| 2

sparser
"Thus the Prp8p-Aar2p complex that accumulates in the prp8-rp mutants is nuclear and therefore, unlike the situation with ΔNLS-Prp8p, has the possibility to interact with Brr2p but does so with reduced efficiency as a consequence of the poor association of Brr2p with Prp8-rp mutant proteins."

sparser
"Compared to wild-type Prp8p ( xref ), the Prp8-rp mutant proteins were associated with less Brr2p ( xref , lanes 1-7) and with more Aar2p ( xref , lanes 9-13)."
PRP4K affects PRPF8
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GCFC2 affects PRPF8
3 | 1
3 | 1

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"Specifically, the TFIP11–GCFC2 dimer interacts with SKIP (scPrp45), while GCFC2 directly binds to PRP8, blocking the recruitment of the RNA helicases DHX16 (scPrp2), DHX38 (scPrp16) and DHX8 (scPrp22), all of which are needed for further splicing progression (Supplementary information, Fig. S10c, d)."

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DHX9 affects PRPF8
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CRNKL1 affects PRPF8
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C9orf78 affects PRPF8
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ZNF830 affects PRPF8
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XAB2 affects PRPF8
2 | 1
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"First, we examined whether PRPF8 and XAB2 form a complex in the human osteosarcoma U2OS cell line, by performing co-IP analysis."

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U2AF2 affects PRPF8
2 | 1
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"BEDtools also cannot show regions of unfavorable binding (the correlation is always positive) or differentiate between upstream and downstream binding geometries.The resolution limit of BEDtools is apparent when observing the binding of PRPF8, RBM22, U2AF2, and BUD13: PRPF8 and RBM22 appear to bind close to each other and U2AF2 and BUD13 bind close to each other as expected (Figures S8H and S8I); however, there is minimal difference in the correlation of U2AF2 with BUD13 versus U2AF2 with PRPF8 or RBM22 (Figure S8I), even though PRPF8 and RBM22 are known to generally bind further from U2AF2 than BUD13."

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TTC27 affects PRPF8
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TCERG1 affects PRPF8
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STIP1 affects PRPF8
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STAU1 affects PRPF8
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SNRPN affects PRPF8
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SNRPG affects PRPF8
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SNRPA1 affects PRPF8
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SNRNP70 affects PRPF8
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SMU1 affects PRPF8
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SF3B6 affects PRPF8
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SF3A2 affects PRPF8
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RBM39 affects PRPF8
2 | 1
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"In addition, physical interactions between RBM39 and SF3A1/2/3, SF3B4, PRPF8 and MBNL1 have also been reported (Figure 5A) (10,83)."

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"Interestingly, we found a positive association of PRPF8 with chromosomal instability, which is in line with a previous study in osteosarcoma cells wherein PRPF8 silencing induces defects in Homologous Recombination (HR) through the specific inhibition of BRCA1 [54]."

reach
"Interestingly, we found a positive association of PRPF8 with chromosomal instability, which is in line with a previous study in osteosarcoma cells wherein PRPF8 silencing induces defects in Homologous Recombination (HR) through the specific inhibition of BRCA1 [54]."

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"Depletion of p53 binding protein 1 (53BP1) suppressed the HR defect induced by both BRCA1 loss and PRPF8 knockdown, suggesting that PRPF8 functions during HR at least in part via facilitating BRCA1 function."
PRPF8 affects cisplatin
| 3

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"A likewise interaction has also been found in Prp8-cisplatin complex [ 97 ]."

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"Mass spectrometric analysis unequivocally supported the previous data and ruled out the role of TCEP in cisplatin interaction with prp8 intein."

reach
"Similar to RecA-cisplatin complex, two cisplatin molecules in a completely dissociated form in the Prp8-cisplatin complex were found [ 64 , 97 ]."
| 3

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"These data suggest that PRPF8 regulates CP110 removal and further promotes ciliogenesis, depending on its ability to bind to the linear ubiquitin chains."

reach
"Strikingly, depletion of PRPF8 in RPE-1 cells dramatically suppressed CP110 removal from the mother centrioles after serum starvation and significantly inhibited ciliogenesis (Fig. 5, C–E; and Fig. S5 C)."

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"PRPF8 promotes CP110 removal to initiate ciliogenesis by binding to the linear ubiquitin chains."

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"3D polymerase (3D ) of EV71 entered the nucleus and targeted the central pre-mRNA processing factor 8 (Prp8) to block pre-mRNA splicing and mRNA synthesis ."

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"Moreover, 3Dpol, the enteroviral RNA-dependent RNA polymerase, enters the nucleus and targets the pre-mRNA processing factor 8 (Prp8) to block pre-mRNA splicing and mRNA synthesis [49]."

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"Picornavirus genome synthesis occurs in the cytoplasm, whereas 3D has a nuclear localization signal that enters the nucleus and targets the pre-mRNA processing factor 8 (Prp8) to block host pre-mRNA splicing and mRNA synthesis [39]."
PRPF8 affects ZNF830
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PRPF8 affects XAB2
2 | 1
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"First, we examined whether PRPF8 and XAB2 form a complex in the human osteosarcoma U2OS cell line, by performing co-IP analysis."

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PRPF8 affects U2AF2
2 | 1
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"BEDtools also cannot show regions of unfavorable binding (the correlation is always positive) or differentiate between upstream and downstream binding geometries.The resolution limit of BEDtools is apparent when observing the binding of PRPF8, RBM22, U2AF2, and BUD13: PRPF8 and RBM22 appear to bind close to each other and U2AF2 and BUD13 bind close to each other as expected (Figures S8H and S8I); however, there is minimal difference in the correlation of U2AF2 with BUD13 versus U2AF2 with PRPF8 or RBM22 (Figure S8I), even though PRPF8 and RBM22 are known to generally bind further from U2AF2 than BUD13."

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PRPF8 affects TTC27
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PRPF8 affects TCERG1
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PRPF8 affects STIP1
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PRPF8 affects STAU1
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PRPF8 affects SNRPN
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PRPF8 affects SNRPG
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PRPF8 affects SNRPA1
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PRPF8 affects SNRNP70
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PRPF8 affects SMU1
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PRPF8 affects SF3B6
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PRPF8 affects SF3A2
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| 3
| 3

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"Further examples include human LINE-1 and other eukaryotic non-LTR retrotransposon RTs, which evolved variations of their reverse transcription and DNA integration mechanisms adapted to eukaryotic genomes and nuclear-cytoplasmic compartmentalization, and the core spliceosomal protein PRP8, which evolved from a group II intron-like RT and promotes RNA splicing by binding small nuclear RNAs derived from group II intron RNA domains (72)."

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"Other striking examples are the evolution of mobile group II introns or their close relatives into the eukaryotic RNA splicing apparatus, including the core spliceosomal protein PrP8, which evolved from a group II intron-like RT and promotes RNA splicing by interacting with snRNAs, which evolved from group II intron RNA domains, as well as closely related RTs encoded by LINE and other eukaryotic non-LTR retrotransposons, which use variations of the reverse transcription and DNA integration mechanisms adapted to eukaryotic genomes and nuclear-cytoplasmic compartmention."

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"Alterations of PRPF8 increase the proliferation of CD34+ primary bone marrow cells and of a myeloid cell line, as well as resulting in defects of the second step of the RNA splicing process [58]."
PRPF8 affects RBM39
2 | 1
2 | 1

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"In addition, physical interactions between RBM39 and SF3A1/2/3, SF3B4, PRPF8 and MBNL1 have also been reported (Figure 5A) (10,83)."

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PRPF8 affects PTK2
| 3
PRPF8 activates PTK2. 3 / 3
| 3

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"PRPF8 increases the aggressiveness of hepatocellular carcinoma by regulating FAK/AKT pathway via fibronectin 1 splicing."

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"PRPF8 increases the aggressiveness of hepatocellular carcinoma by regulating the FAK/AKT pathway via fibronectin 1 splicing [5]."

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"PRPF8 changes FN1 splicing and stimulates FAK/Akt axis in increasing HCC progression [85]."
PRPF8 affects PPIH
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PRPF8 affects PLRG1
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PRPF8 affects PIH1D1
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PRPF8 affects N
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N binds PRPF8. 3 / 3
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PRPF8 affects ISY1
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PRPF8 affects Hypoxia
| 3
PRPF8 activates Hypoxia. 3 / 3
| 3

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"CCK8 results revealed that transfection with PRP8 siRNA reversed hypoxia‐induced HPASMC proliferation, and this effect was eliminated after silencing circNAP1L4 (Figure 6E)."

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"Importantly, our results also showed that PRP8 siRNA reversed hypoxia‐induced HPASMC glycolysis and proliferation, suggesting that PH might be due in part to the aberrant NAP1L4 pre‐mRNA splicing caused by PRP8 in PASMCs."

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"These data suggest that PRPF8 supports hypoxia-induced mitochondrial clearance by ensuring correct ULK1 splicing, also with a likely effect on general autophagy, suggested by a global effect on autoph[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects HSF1
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PRPF8 affects HNRNPU
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PRPF8 affects GPKOW
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PRPF8 affects Flag
| 3
| 3

sparser
"Immunostaining of Drosophila S2 cells ( xref E–P) and imaginal discs ( xref Q,R,) further revealed that the transgenic wild-type Prp8 (Prp8 wt ) as well as the RP-Prp8 mutant variants primarily localized to the cytoplasm where the endogenous Drosophila Prp8 or transgenic human Flag::PRPF8 proteins were also mostly confined."

sparser
"Interestingly, when RUVBL1–RUVBL2, AAR2, ECD, RPAP3-PIH1D1 and ZNHIT2ΔC were added to the Flag-affinity resin loaded with Flag-PRPF8, all these proteins eluted with PRPF8 (Figure xref , xref )."

sparser
"However, when Flag-PRPF8 was present in the lysates, RUVBL1–RUVBL2 formed a direct complex with PRPF8, and this interaction was still detected when ATP was added to the reaction (Figure xref )."
PRPF8 affects FlaG
| 3
| 3

sparser
"We therefore co-transfected constant amounts of plasmids encoding EFTUD2-FLAG, PRPF8-FLAG, and SNRNP200-FLAG, alongside increasing amounts of the plasmid encoding GFP-μ2."

sparser
"Even when the lowest amount of GFP-μ2 is expressed, the expression of both PRPF8-FLAG and SNRNP200-FLAG is nearly completely suppressed compared to the GFP control ( xref )."

sparser
"Moreover, we also tested a PRPF6-FLAG construct, which expression was suppressed by the presence of μ2 in the same fashion as PRPF8-FLAG and SNRNP200-FLAG."
PRPF8 affects ERG
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PRPF8 affects EIF4G1
| 3
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
Docking protein-1 binds PRPF8 and EIF4G1. 1 / 1
| 1

sparser
"As a polymeric protein, pp62 protein is co-assembled with another polymeric protein, pp220, to form the inner core shell of ASFV ( xref )."
PRPF8 affects DNAAF10
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PRPF8 affects CDC40
2 | 1
PRPF8 binds CDC40.
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PRPF8 activates CDC40.
| 1
PRPF8 activates CDC40. 1 / 1
| 1

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"The other subdomain binds the RNaseH-like domain of Prp8 and is in close proximity of the Jab1/MPN domain of Prp8 ( Figures 3 B and 3C), which forms a stable complex with Brr2 throughout the two steps[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects BSG
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PRPF8 affects AQR
2 | 1
2 | 1

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sparser
"Focusing on SE events, for instance, we observed that AQR and PRPF8 binding at the flanking intronic regions of event body (location features γ and ζ ) associated with differential SE significantly (at FDR level of 0.05, Fig.  xref b and Additional file  xref : Figs."
| PMC
PRPF8 affects AKT
| 3
PRPF8 activates AKT. 3 / 3
| 3

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"PRPF8 increases the aggressiveness of hepatocellular carcinoma by regulating FAK/AKT pathway via fibronectin 1 splicing."

reach
"PRPF8 increases the aggressiveness of hepatocellular carcinoma by regulating the FAK/AKT pathway via fibronectin 1 splicing [5]."

reach
"PRPF8 changes FN1 splicing and stimulates FAK/Akt axis in increasing HCC progression [85]."
PPIH affects PRPF8
3 |
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PLRG1 affects PRPF8
3 |
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PIH1D1 affects PRPF8
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N affects PRPF8
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N binds PRPF8. 3 / 3
3 |

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ISY1 affects PRPF8
3 |
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HSP90 affects PRPF8
| 3
HSP90 binds PRPF8.
| 2
| 2

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"In this study, we show that the U5 specific proteins PRPF8 and EFTUD2 interact in vivo with HSP90 and R2TP and that these interactions arise early in the cytoplasm."

reach
"The HSP90 and R2TP machinery binds unassembled cytoplasmic forms of PRPF8 and EFTUD2."
HSP90 increases the amount of PRPF8.
| 1
HSP90 increases the amount of PRPF8. 1 / 1
| 1

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"First, inhibiting HSP90 leads to decreased levels of PRPF8 and SNRNP200."
HSF1 affects PRPF8
3 |
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HNRNPU affects PRPF8
3 |
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GPKOW affects PRPF8
3 |
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Flag affects PRPF8
| 3
| 3

sparser
"Immunostaining of Drosophila S2 cells ( xref E–P) and imaginal discs ( xref Q,R,) further revealed that the transgenic wild-type Prp8 (Prp8 wt ) as well as the RP-Prp8 mutant variants primarily localized to the cytoplasm where the endogenous Drosophila Prp8 or transgenic human Flag::PRPF8 proteins were also mostly confined."

sparser
"Interestingly, when RUVBL1–RUVBL2, AAR2, ECD, RPAP3-PIH1D1 and ZNHIT2ΔC were added to the Flag-affinity resin loaded with Flag-PRPF8, all these proteins eluted with PRPF8 (Figure xref , xref )."

sparser
"However, when Flag-PRPF8 was present in the lysates, RUVBL1–RUVBL2 formed a direct complex with PRPF8, and this interaction was still detected when ATP was added to the reaction (Figure xref )."
FlaG affects PRPF8
| 3
| 3

sparser
"We therefore co-transfected constant amounts of plasmids encoding EFTUD2-FLAG, PRPF8-FLAG, and SNRNP200-FLAG, alongside increasing amounts of the plasmid encoding GFP-μ2."

sparser
"Even when the lowest amount of GFP-μ2 is expressed, the expression of both PRPF8-FLAG and SNRNP200-FLAG is nearly completely suppressed compared to the GFP control ( xref )."

sparser
"Moreover, we also tested a PRPF6-FLAG construct, which expression was suppressed by the presence of μ2 in the same fashion as PRPF8-FLAG and SNRNP200-FLAG."
ERG affects PRPF8
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EIF4G1 affects PRPF8
| 3
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
Docking protein-1 binds PRPF8 and EIF4G1. 1 / 1
| 1

sparser
"As a polymeric protein, pp62 protein is co-assembled with another polymeric protein, pp220, to form the inner core shell of ASFV ( xref )."
DNAAF10 affects PRPF8
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CDK2 affects PRPF8
| 3
CDK2 phosphorylates PRPF8. 3 / 3
| 3

sparser
"In somatic cells, histone H4 gene expression is controlled by CDK2 phosphorylation of p220(NPAT) and localization of HiNF-P/p220(NPAT) complexes with histone genes at Cajal body related subnuclear foci."

sparser
"Although appearance of CDK2-phosphorylated p220(NPAT) in these domains occurs at the time of S-phase entry, histone locus bodies are formed approximately 1 to 2 h before S phase in embryonic cells but 6 h before S phase in somatic cells."

sparser
"Basal histone H4 expression in G0/G1, although p220 dependent, occurs in the absence of detectable phosphorylation of p220 on Cdk2 sites."
BSG affects PRPF8
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AQR affects PRPF8
2 | 1
2 | 1

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sparser
"Focusing on SE events, for instance, we observed that AQR and PRPF8 binding at the flanking intronic regions of event body (location features γ and ζ ) associated with differential SE significantly (at FDR level of 0.05, Fig.  xref b and Additional file  xref : Figs."
| PMC
17alpha-ethynylestradiol increases the amount of PRPF8. 3 / 3
3 |

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Copper(2+) affects PRPF8
| 2
| 2

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"Biologically relevant metal ions Cu 2+ and Zn 2+ at 0.5 mM and 2 mM respectively could inhibit splicing of the C. neoformans Prp8 intein in an in vitro Prp8 intein splicing assay, whereas Mg 2+ at 0.5 mM and 2 mM did not ."

reach
"Like other stressors known to inhibit RNA splicing, copper and zinc would act post-translationally to block Prp8 intein splicing and inhibit spliceosome function until levels of the metals are diminished by scavenger proteins or metal transporters [73]."
Cadmium dichloride increases the amount of PRPF8. 2 / 2
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Bisphenol F affects PRPF8
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Bisphenol F decreases the amount of PRPF8. 2 / 2
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ZGPAT affects PRPF8
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ZC3H18 affects PRPF8
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YBX1 affects PRPF8
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VIRMA affects PRPF8
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USP9X affects PRPF8
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URI1 affects PRPF8
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UBR5 affects PRPF8
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U6 RNA affects PRPF8
| 2
PRPF8 binds U6 RNA. 2 / 2
| 2

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"In yeast, CWC15 stabilizes the interaction between U6 RNA and PRP8 ."

reach
"Prpf3 is part of U4/U6-U 5 tri-snRNP, whereas Prpf31 binds to the U4 snRNP and Prpc8 interacts with U6 RNA."
U2SURP affects PRPF8
1 | 1
1 | 1

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"Interactions between PRPF8, U2SURP, or DDX5 with SMG1 did not change in the presence or absence of radiation (Fig. 3D and E and Supplementary fig."
TUBB affects PRPF8
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TUBA4A affects PRPF8
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TOP1 affects PRPF8
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TMED9 affects PRPF8
| 2
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
Snw1 affects PRPF8
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STUB1 affects PRPF8
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SSs affects PRPF8
| 2
| 2

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"RP13-ROs had significantly fewer weak 5’SSs bound to PRPF8 in transcripts encoding proteins mediating transcription, and ciliary functions (Fig. 7B, C), corroborating the enrichment of ciliary transcripts that undergo alternative exon usage in this tissue (Fig. 3F)."

reach
"RP13-RPE had slightly more weak 5’SSs bound to PRPF8 (Fig. 7B and Supplementary data 8) affecting similar pathways (Fig. 7D; RNA binding, nucleolus, nuclear lumen; cilium assembly, cilium)."
SSRP1 affects PRPF8
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SRRM1 affects PRPF8
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SRPK2 affects PRPF8
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SRPK1 affects PRPF8
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SLC7A6OS affects PRPF8
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SERBP1 affects PRPF8
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SCARB2 affects PRPF8
2 |
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"Retinitis pigmentosa-linked mutations impair the snRNA unwinding activity of SNRNP200 and reduce pre-mRNA binding of PRPF8."

reach
"Variants in PRPF8 cause retinitis pigmentosa type 13 (RP-13)."
RPS25 affects PRPF8
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RPS14 affects PRPF8
2 |
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RPLP0 affects PRPF8
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RPL6 affects PRPF8
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RPL11 affects PRPF8
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RPA3 affects PRPF8
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RPA2 affects PRPF8
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RPA1 affects PRPF8
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RNPS1 affects PRPF8
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RIOK1 affects PRPF8
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Particulate Matter increases the amount of PRPF8. 2 / 2
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PTGES3 affects PRPF8
2 |
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PRPF8 affects Δ
| 2
PRPF8 inhibits Δ. 2 / 2
| 2

reach
"Identification of mutants in Prp8 that suppress fyv6Δ is not surprising since many different alleles of Prp8 are known to modulate the conformational equilibrium between the 1 and 2 steps (Fica and Nagai, 2017; L. Liu et al., 2007; Query and Konarska, 2004) or other steps in splicing."

reach
"Identification of mutants in Prp8 that suppress fyv6Δ is not surprising since many different alleles of Prp8 are known to modulate the conformational equilibrium between the first and second steps (Fica and Nagai, 2017; Liu et al., 2007b; Query and Konarska, 2004) or other steps in splicing."
PRPF8 affects prp16-302 allele
| 2
PRPF8 inhibits prp16-302 allele. 2 / 2
| 2

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"Furthermore, whereas second-step alleles improve the second step, the N-terminal alleles inhibit both catalytic steps, indicating that they act by different mechanisms.Alleles in three spliceosomal factors: U6, Cwc2, and Prp8, that suppress defects of the prp16-302 allele, identified important catalytic interactions stabilizing the first-step conformation but destabilized by the Prp16 ATPase at the transition to the second step."

reach
"These prp8 alleles significantly suppress growth defects of prp16-302 allele (Fig. 4B), and most of them (prp8-F331L, Y356C, Y590C/F, K603I, K611I/T, and S613T) also correct growth defects of prp16-R686I, demonstrating the generality of these effects (Fig. 4C)."
PRPF8 affects proliferative migratory invasive cells
| 2
PRPF8 activates proliferative migratory invasive cells. 2 / 2
| 2

eidos
"Taken together , Prp8 knockdown reduced the proliferative , migratory and invasive abilities of HCC cells ."

eidos
"Collectively , Prp8 promoted the proliferative , migratory and invasive abilities of HCC cells ."
PRPF8 affects migration
| 2
PRPF8 activates migration. 2 / 2
| 2

eidos
"Upregulation of Prp8 promoted cell viability and migration in a human hepatic astrocyte line ."

eidos
"Upregulation of Prp8 promoted cell viability and migration in HCC cells ."
| 1 1
| 1 1

eidos
"Furthermore , PRPF8 , AKAP9 , UVRAG , HDAC10 and NFE2L1 are known to mediate the immune response ."

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"Furthermore, PRPF8, AKAP9, UVRAG, HDAC10 and NFE2L1 are known to mediate the immune response."

reach
"Moreover, HPASMC glycolysis was abrogated by PRP8 siRNA under hypoxia, and circNAP1L4 siRNA enhanced this effect (Figure 6I)."

reach
"Taken together, these findings suggest that PRP8 leads to abnormal activation of HPASMC proliferation and glycolysis under hypoxia, which is achieved mainly through circNAP1L4.3.9 CircNAP1L4 alleviates SuHx-induced PH in mice."

reach
"PRP8 Induces the Biogenesis of CircMaml2."

reach
"Furthermore, PRP8 was discovered to promote the biogenesis of circMaml2."
PRPF8 affects ZGPAT
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PRPF8 affects ZC3H18
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PRPF8 affects YBX1
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PRPF8 affects VIRMA
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PRPF8 affects USP9X
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PRPF8 affects URI1
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PRPF8 affects UBR5
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PRPF8 affects U6 RNA
| 2
PRPF8 binds U6 RNA. 2 / 2
| 2

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"In yeast, CWC15 stabilizes the interaction between U6 RNA and PRP8 ."

reach
"Prpf3 is part of U4/U6-U 5 tri-snRNP, whereas Prpf31 binds to the U4 snRNP and Prpc8 interacts with U6 RNA."
PRPF8 affects U4/U6
| 2
PRPF8 activates U4/U6. 2 / 2
| 2

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"Following de-ubiquitination of Prp8, Brr2 is free to promote unwinding of U4/U6, resulting in activation of the spliceosome [48]."
| PMC

reach
"Indeed a C-terminal fragment of Prp8 — encompassing the RNaseH-like and Jab/MPN1-like domains — strongly stimulates Brr2-dependent U4/U6 unwinding in vitro [ 44 ]."
PRPF8 affects U2SURP
1 | 1
1 | 1

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"Interactions between PRPF8, U2SURP, or DDX5 with SMG1 did not change in the presence or absence of radiation (Fig. 3D and E and Supplementary fig."
PRPF8 affects TUBB
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PRPF8 affects TUBA4A
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PRPF8 affects TOP1
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PRPF8 affects TMED9
| 2
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects Snw1
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PRPF8 affects STUB1
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PRPF8 affects SSs
| 2
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"RP13-ROs had significantly fewer weak 5’SSs bound to PRPF8 in transcripts encoding proteins mediating transcription, and ciliary functions (Fig. 7B, C), corroborating the enrichment of ciliary transcripts that undergo alternative exon usage in this tissue (Fig. 3F)."

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"RP13-RPE had slightly more weak 5’SSs bound to PRPF8 (Fig. 7B and Supplementary data 8) affecting similar pathways (Fig. 7D; RNA binding, nucleolus, nuclear lumen; cilium assembly, cilium)."
PRPF8 affects SSRP1
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PRPF8 affects SRRM1
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PRPF8 affects SRPK2
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PRPF8 affects SRPK1
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PRPF8 affects SLC7A6OS
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PRPF8 affects SERBP1
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PRPF8 affects SCARB2
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"The authors differentiated gene-corrected patient urinary iPSCs to RPE cells and generated 3D ROs rescuing photoreceptor structure and electrophysiological properties, reversing the observed ciliopathy and restoring gene expression to a level in accordance with that in the control using transcriptome-based analysis.A study by Foltz and colleagues [100] describes the use of genome editing technology in patient-derived iPSCs to correct the c.6901C>T point mutation in the PRPF8 gene that causes Retinitis Pigmentosa 13 (RP13), thus generating an isogenic control line for cellular modelling."

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"A better knowledge of how Prp8 suppresses the effect of mutations at well-conserved 5′-GU and 3′-branch-point sites under the control of various DExD/H-box proteins could open a novel way to correct t[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects RPS3
1 | 1
PRPF8 inhibits RPS3.
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Mutated PRPF8 inhibits RPS3. 1 / 1
| 1

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"These RPE abnormalities are more severe in the homozygous Prpf3-T494M and Prpf8-H2309P mice, suggesting that RP18 and RP13 are caused by the gain-of-function or dominant negative effect of Prpf3 and Prpf8 mutations."
PRPF8 binds RPS3.
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PRPF8 affects RPS25
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PRPF8 affects RPS14
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PRPF8 affects RPLP0
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PRPF8 affects RPL6
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PRPF8 affects RPL11
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PRPF8 affects RPA3
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PRPF8 affects RPA2
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PRPF8 affects RPA1
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PRPF8 affects RNPS1
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PRPF8 affects RIOK1
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PRPF8 affects PTGES3
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PRPF8 affects PRKN
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PRPF8 affects PRKDC
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PRPF8 affects PPWD1
1 | 1
1 | 1

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sparser
"We find PPWD1 interacting with PRPF8 through both its PPI and WD40-domains, which also interacts with U5 snRNP 200 kDa ( xref )."
PRPF8 affects PPP1CA
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PRPF8 affects PPIL1
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PRPF8 affects PPIE
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PRPF8 affects PHB1
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PRPF8 affects PABPC1
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PRPF8 affects ORF9c
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ORF9c binds PRPF8. 2 / 2
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| DOI
PRPF8 affects Neoplasms
| 2
| 2

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"Therefore, further investigation into the widely applicable downstream targets activated by PRPF8 across different tumors or at various stages of tumor progression may enhance the understanding of cancer development mechanisms and offer promising implications for cancer therapy."

reach
"PRPF8 silencing ameliorated aggressiveness in vitro and decreased tumor growth in vivo."

eidos
"Functionally , the loss of Prp8 may specifically inhibit cell viability and metastasis and activated EMT and PI3K / Akt in HCC cells ."

eidos
"The upregulation of Prp8 promoted cell viability , metastasis and the activity of the PI3K / Akt pathway in hepatic astrocytes cells and HCC cells ."
PRPF8 affects NUDCD2
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PRPF8 affects NPM1
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PRPF8 affects NCL
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PRPF8 affects NCDN
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PRPF8 affects MFAP1
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PRPF8 affects METTL14
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PRPF8 affects MATR3
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PRPF8 affects LUC7L2
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PRPF8 affects LSM2
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PRPF8 affects LRRC59
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PRPF8 affects LCN2
| 2
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects KPNB1
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PRPF8 affects KPNA4
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PRPF8 affects KIAA1143
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PRPF8 affects ISPH
| 2
PRPF8 inhibits ISPH. 2 / 2
| 2

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"Using two independent siRNAs targeting PRPF8 (siPRPF8-2, siPRPF8-4), as well as a previously described siRNA targeting XAB2 (siXAB2-4), we found that PRPF8 and XAB2 depletion cause a significantly greater decrease in the frequency of HDR and SSA, compared to EJ."

reach
"Depletion of PRPF8 and treatment with a small molecule spliceosome inhibitor (PlaB) disrupts HDR, SSA, and end resection."
PRPF8 affects IPO7
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PRPF8 affects IK
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PRPF8 affects Histone_H4
| 2
| 2

sparser
"In cells where HiNF-P and p220(NPAT) do not activate the H4 gene promoter, HiNF-P instead represses transcription."

sparser
"Here we find that γ-irradiation induces p21 CIP1/WAF1 but not the other two CKIs, while reducing histone H4 mRNA levels but not histone H4 gene promoter activation by the p220 NPAT /HiNF-P complex."
PRPF8 affects Histone
| 2
PRPF8 activates Histone. 2 / 2
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sparser
"Irradiation reduces histone mRNA levels but not histone gene promoter activation by the p220 NPAT /HiNF-P complex."

sparser
"Hence, physiological induction of p21 CIP1/WAF1 during a genotoxic stress response contributes to a reduction of histone mRNA accumulation but does not impinge on the CDK2 dependent transcriptional activation of histone genes by the p220 NPAT /HiNF-P complex."
PRPF8 affects HUWE1
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PRPF8 affects HSPA8
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PRPF8 affects HSPA5
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PRPF8 affects HSPA1A
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PRPF8 affects HSP90AA1
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PRPF8 affects HSP90
| 2
| 2

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"In this study, we show that the U5 specific proteins PRPF8 and EFTUD2 interact in vivo with HSP90 and R2TP and that these interactions arise early in the cytoplasm."

reach
"The HSP90 and R2TP machinery binds unassembled cytoplasmic forms of PRPF8 and EFTUD2."
PRPF8 affects HRES1
| 2
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects HNRNPM
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PRPF8 affects HNRNPK
1 | 1
1 | 1

sparser
"These results suggested that C'2 and D are probably the functional domains, which affect the binding of snoRD126 to hnRNPK and PRPF8 proteins."

No evidence text available
PRPF8 affects HNRNPH2
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PRPF8 affects HNRNPC
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PRPF8 affects HNRNPA1
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PRPF8 affects HMGB1
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PRPF8 affects HDLBP
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PRPF8 affects HADHA
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PRPF8 affects H4C16
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PRPF8 affects H2BC5
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PRPF8 affects H2BC21
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PRPF8 affects G3BP2
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PRPF8 affects FYV6
| 2
| 2

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"Genetic interactions between Fyv6 and Prp8 first or second-step alleles."

reach
"Genetic Interactions between Fyv6 and Prp8 1 st or 2 nd -Step Alleles."
PRPF8 affects FN1
| 2
PRPF8 activates FN1. 2 / 2
| 2

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"These results showed that PRPF8 silencing induced a reduction in the PSI value of FN1 exon 40.2 inclusion, while restoration of PRPF8 expression in silenced Hep3B cells by PRPF8 overexpression restored the PSI value of FN1 in parental cells (Fig. 5j)."

reach
"To further confirm the role of PRPF8 in cell invasion, we investigated whether PRPF8 silencing can block the secretion of proinvasive molecules, including FN1 splice variants."
PRPF8 affects FBXO22
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PRPF8 affects EP300
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PRPF8 affects EIF4A3
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PRPF8 affects EEF1G
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PRPF8 affects EEF1D
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PRPF8 affects EBNA-LP
1 1 |
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PRPF8 affects E6
1 | 1
PRPF8 decreases the amount of E6.
| 1
PRPF8 decreases the amount of E6. 1 / 1
| 1

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"Although KD of ECD and PRPF8 appeared to decrease the expression of intact E6 (intron-containing) RNA, there was no difference among the three groups (Fig. 4B; Supplementary Table S5)."
PRPF8 binds E6.
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1 |

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PRPF8 affects Disease
| 2
Mutated PRPF8 activates Disease. 2 / 2
| 2

reach
"It is reported that PRPF8 mutation caused aberrant splicing in some human diseases, such as myeloid malignancies and autosomal-dominant retinitis pigmentosa (Kurtovic-Kozaric et al., 2015; Xiao et al., 2020)."

reach
"Additionally, the reasons why different PRPF8 mutations and/or varying expression levels contribute to distinct diseases, such as various cancers or retinal diseases, remain elusive."
PRPF8 affects DSG1
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PRPF8 affects DNAJC17
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PRPF8 affects DHX8
1 | 1
1 | 1

No evidence text available

sparser
"DHX8 also directly interacts with PRPF8 and plays a role in positioning the 3′ splice site for step II catalysis, and this is similar to what occurs after exon ligation, which is thought to bind and pull the 3′ sequences of the ligated exon, releasing the exon of the P complex ( xref ; xref ) ( xref )."
PRPF8 affects DHX38
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PRPF8 affects DHX16
| 2
| 2

reach
"This flexible anchoring is conditioned by the hook of PRP2 binding to PRP8, the presence of which may serve as a signature for the occurrence of the translocation of PRP2."

reach
"Moreover, the clip of PRP2 replaced SNIP1 by interacting with the α3 helix of SKIP, whereas new interactions between PRP2 , SKIP and PRP8 replace those between BUD13 and SKIP in the B complex (Fig. 3a and Extended Data Fig. 4c,d)."
PRPF8 affects DDX5
1 | 1
1 | 1

No evidence text available

reach
"Interactions between PRPF8, U2SURP, or DDX5 with SMG1 did not change in the presence or absence of radiation (Fig. 3D and E and Supplementary fig."
PRPF8 affects DDX3X
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PRPF8 affects DDX21
2 |
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PRPF8 affects DDB1
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PRPF8 affects CircMaml2
| 2
PRPF8 activates CircMaml2. 2 / 2
| 2

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"PRP8-Induced CircMaml2 Facilitates the Healing of the Intestinal Mucosa via Recruiting PTBP1 and Regulating Sec62."

reach
"PRP8 Induces the Biogenesis of CircMaml2."

reach
"PRPF8 increases the aggressiveness of hepatocellular carcinoma by regulating FAK/AKT pathway via fibronectin 1 splicing."

reach
"PRPF8 increases the aggressiveness of hepatocellular carcinoma by regulating the FAK/AKT pathway via fibronectin 1 splicing [5]."
PRPF8 affects CWF19L1
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No evidence text available
PRPF8 affects CUL3
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No evidence text available
PRPF8 affects COPS5
| 2
| 2

sparser
"In contrast, the C-terminal Jab1 domain of the large spliceosomal PRPF8 scaffold that can activate the SNRNP200 helicase directly binds the active NC xref , xref ."

sparser
"For crystallographic analyses, we used N-terminally truncated hBrr2 T1 in complex with the Jab1 domain of the hPrp8 protein lacking a Brr2-inhibiting C-terminal tail (hJab1 ΔC )."
PRPF8 affects CCNF
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PRPF8 affects Brr2p
| 2
Mutated PRPF8 inhibits Brr2p. 1 / 1
| 1

reach
"The fact that the U4-cs1 mutation, which blocks splicing at low temperature by hyperstabilizing the U4/U6 duplex [71] , becomes synthetically lethal in combination with either brr2 - 1 or prp28 - 1 mu[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 inhibits Brr2p. 1 / 1
| 1

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"For example, a previous study suggested that mutations in PRPF8 may cause RP by disrupting the nuclear association of Brr2p with the U5 snRNP and, consequently, the assembly of the triple snRNP."
PRPF8 affects BUD31
2 |
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PRPF8 affects BLM
| 2
PRPF8 inhibits mutated BLM. 2 / 2
| 2

reach
"Two of these SS/BS suppressors represent alleles of PRP8 ( prp8 - 161 and prp8 - 162 ); furthermore, previously characterized splice site prp8 alleles also suppress BS mutations."

reach
"This confirms that BS suppressors 1 and 2 represent prp8 alleles and thus that some prp8 alleles can suppress BS mutations.These results suggested that the previously isolated splice site prp8 suppres[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects BAP1
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PRPF8 affects BAG5
2 |
2 |

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PRPF8 affects BAG2
2 |
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sparser
"Interestingly, in contrast to its stimulation of Brr2 helicase activity, the wild-type Prp8 fragment actually inhibited the RNA-dependent ATPase activity of Brr2."

sparser
"WT Brr2 also demonstrates RNA stimulated ATPase activity which is inhibited by Prp8-CTR ( xref )."
PRPF8 affects ANXA2
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2 |

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PRPF8 affects ANLN
2 |
2 |

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PRPF8 affects AGR2
2 |
2 |

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PRPF8 affects 3D
| 2
| 2

reach
"For example, 3D polymerase from enterovirus 71 directly binds to pre-mRNA processing factor 8 (PRPF8) and disrupts the pre-mRNA splicing processes, contributing to the invasion of the virus (Liu et al., 2014)."

reach
"In the case of picornaviruses, it has been shown recently that the viral polymerase 3D binds to PRPF8, a core components of U5, and blocks mRNA maturation, with the consequent accumulation of the lariat intermediate [XREF_BIBR]."
PRP8 affects MT-ATP6
| 2
| 2

sparser
"Thus the Prp8p-Aar2p complex that accumulates in the prp8-rp mutants is nuclear and therefore, unlike the situation with ΔNLS-Prp8p, has the possibility to interact with Brr2p but does so with reduced efficiency as a consequence of the poor association of Brr2p with Prp8-rp mutant proteins."

sparser
"Compared to wild-type Prp8p ( xref ), the Prp8-rp mutant proteins were associated with less Brr2p ( xref , lanes 1-7) and with more Aar2p ( xref , lanes 9-13)."
PRKN affects PRPF8
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2 |

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PRKDC affects PRPF8
2 |
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PPWD1 affects PRPF8
1 | 1
1 | 1

No evidence text available

sparser
"We find PPWD1 interacting with PRPF8 through both its PPI and WD40-domains, which also interacts with U5 snRNP 200 kDa ( xref )."
PPP1CA affects PRPF8
2 |
2 |

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No evidence text available
PPIL1 affects PRPF8
2 |
2 |

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PPIE affects PRPF8
2 |
2 |

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PKC affects PRPF8
| 2
PKC phosphorylates PRPF8. 2 / 2
| 2

sparser
"This distinguishes this kinase, tentatively ca/led 4E kinase, from protein kinase C which phosphorylates p220 at a more rapid rate than p25 of elF-4F (24)."

sparser
"This is an important point because protein kinase C phosphorylates both p220 and p25 of elF-4F (24)."
PHB1 affects PRPF8
2 |
2 |

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No evidence text available
PABPC1 affects PRPF8
2 |
2 |

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No evidence text available
ORF9c affects PRPF8
2 |
ORF9c binds PRPF8. 2 / 2
2 |

No evidence text available

No evidence text available
| DOI
NUDCD2 affects PRPF8
2 |
2 |

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No evidence text available
NPM1 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
NCL affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
NCDN affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
MT-ATP6 affects PRPF8
| 2
| 2

sparser
"Thus the Prp8p-Aar2p complex that accumulates in the prp8-rp mutants is nuclear and therefore, unlike the situation with ΔNLS-Prp8p, has the possibility to interact with Brr2p but does so with reduced efficiency as a consequence of the poor association of Brr2p with Prp8-rp mutant proteins."

sparser
"Compared to wild-type Prp8p ( xref ), the Prp8-rp mutant proteins were associated with less Brr2p ( xref , lanes 1-7) and with more Aar2p ( xref , lanes 9-13)."
MFAP1 affects PRPF8
2 |
2 |

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No evidence text available
METTL14 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
MATR3 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
LUC7L2 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
LSM2 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
LRRC59 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
LCN2 affects TMED9
| 2
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
KPNB1 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
KPNA4 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
KIAA1143 affects PRPF8
2 |

No evidence text available

No evidence text available
IPO7 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
IK affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
HUWE1 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
HSPA8 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
HSPA5 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
HSPA1A affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
HSP90AA1 affects PRPF8
2 |

No evidence text available

No evidence text available
HRES1 affects TMED9
| 2
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
HNRNPM affects PRPF8
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No evidence text available

No evidence text available
HNRNPK affects PRPF8
1 | 1
1 | 1

sparser
"These results suggested that C'2 and D are probably the functional domains, which affect the binding of snoRD126 to hnRNPK and PRPF8 proteins."

No evidence text available
HNRNPH2 affects PRPF8
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No evidence text available

No evidence text available
HNRNPC affects PRPF8
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No evidence text available

No evidence text available
HNRNPA1 affects PRPF8
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2 |

No evidence text available

No evidence text available
HMGB1 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
HDLBP affects PRPF8
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No evidence text available

No evidence text available
HADHA affects PRPF8
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No evidence text available

No evidence text available
H4C16 affects PRPF8
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2 |

No evidence text available

No evidence text available
H2BC5 affects PRPF8
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No evidence text available

No evidence text available
H2BC21 affects PRPF8
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2 |

No evidence text available

No evidence text available
G3BP2 affects PRPF8
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2 |

No evidence text available

No evidence text available
FYV6 affects PRPF8
| 2
| 2

reach
"Genetic interactions between Fyv6 and Prp8 first or second-step alleles."

reach
"Genetic Interactions between Fyv6 and Prp8 1 st or 2 nd -Step Alleles."
FBXO22 affects PRPF8
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No evidence text available

No evidence text available
EP300 affects PRPF8
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No evidence text available

No evidence text available
EIF4G1 affects TMED9
| 2
| 2

sparser
"Chemical cross-linking of eIF-4F to cap-labeled mRNA, showed that phosphorylation increased the interaction of both the p25 and p220 subunits of eIF-4F with the 5' end of mRNA."

sparser
"J Biol Chem 266, 4669-4672 62 Bu X. Haas DW, Hagedorn CH (1993) Novel phosphorylation sites of eukaryotic initiation factor 4F and evidence that phosphorylation stabilizes interactions of the p25 and[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
EIF4A3 affects PRPF8
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No evidence text available

No evidence text available
EFTUD2 affects AAR2
| 2
| 2

sparser
"Collectively, these data provide strong support for the idea that PRPF8 associates with EFTUD2 and AAR2 early in its assembly pathway."

sparser
"These results support the idea that PRPF8, AAR2, and EFTUD2 form an assembly intermediate in human cells and that some of the mutants are trapped at this stage."
EEF1G affects PRPF8
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No evidence text available

No evidence text available
EEF1D affects PRPF8
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No evidence text available

No evidence text available
EBNA-LP affects PRPF8
1 1 |
1 1 |

No evidence text available

No evidence text available
DSG1 affects PRPF8
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No evidence text available

No evidence text available
DNAJC17 affects PRPF8
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No evidence text available

No evidence text available
DHX8 affects PRPF8
1 | 1
1 | 1

No evidence text available

sparser
"DHX8 also directly interacts with PRPF8 and plays a role in positioning the 3′ splice site for step II catalysis, and this is similar to what occurs after exon ligation, which is thought to bind and pull the 3′ sequences of the ligated exon, releasing the exon of the P complex ( xref ; xref ) ( xref )."
DHX38 affects PRPF8
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No evidence text available

No evidence text available
DHX16 affects PRPF8
| 2
| 2

reach
"This flexible anchoring is conditioned by the hook of PRP2 binding to PRP8, the presence of which may serve as a signature for the occurrence of the translocation of PRP2."

reach
"Moreover, the clip of PRP2 replaced SNIP1 by interacting with the α3 helix of SKIP, whereas new interactions between PRP2 , SKIP and PRP8 replace those between BUD13 and SKIP in the B complex (Fig. 3a and Extended Data Fig. 4c,d)."
DDX5 affects PRPF8
1 | 1
1 | 1

No evidence text available

reach
"Interactions between PRPF8, U2SURP, or DDX5 with SMG1 did not change in the presence or absence of radiation (Fig. 3D and E and Supplementary fig."
DDX3X affects PRPF8
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No evidence text available

No evidence text available
DDX21 affects PRPF8
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No evidence text available

No evidence text available
DDB1 affects PRPF8
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No evidence text available

No evidence text available
CWF19L1 affects PRPF8
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No evidence text available

No evidence text available
CUL3 affects PRPF8
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No evidence text available

No evidence text available
COPS5 affects PRPF8
| 2
| 2

sparser
"In contrast, the C-terminal Jab1 domain of the large spliceosomal PRPF8 scaffold that can activate the SNRNP200 helicase directly binds the active NC xref , xref ."

sparser
"For crystallographic analyses, we used N-terminally truncated hBrr2 T1 in complex with the Jab1 domain of the hPrp8 protein lacking a Brr2-inhibiting C-terminal tail (hJab1 ΔC )."
CDC40 affects PRPF8
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No evidence text available

No evidence text available
CCP110 affects PRPF8
| 1 1
| 1 1

sparser
"Thus, LUBAC-catalyzed linear ubiquitin chains construct a CP110PRPF8 complex in which PRPF8 takes CP110 away from the mother centriole to promote ciliogenesis."

reach
"Thus, LUBAC-catalyzed linear ubiquitin chains construct a CP110PRPF8 complex in which PRPF8 takes CP110 away from the mother centriole to promote ciliogenesis."
CCNF affects PRPF8
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2 |

No evidence text available

No evidence text available
Bloc1s3 affects PRPF8
| 2
| 2

sparser
"Thus the Prp8p-Aar2p complex that accumulates in the prp8-rp mutants is nuclear and therefore, unlike the situation with ΔNLS-Prp8p, has the possibility to interact with Brr2p but does so with reduced efficiency as a consequence of the poor association of Brr2p with Prp8-rp mutant proteins."

sparser
"Compared to wild-type Prp8p ( xref ), the Prp8-rp mutant proteins were associated with less Brr2p ( xref , lanes 1-7) and with more Aar2p ( xref , lanes 9-13)."
BUD31 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
BAP1 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
BAG5 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
BAG2 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
ANXA2 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
ANLN affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
AGR2 affects PRPF8
2 |
2 |

No evidence text available

No evidence text available
AAR2 affects EFTUD2, and PRPF8
| 2
| 2

sparser
"Collectively, these data provide strong support for the idea that PRPF8 associates with EFTUD2 and AAR2 early in its assembly pathway."

sparser
"These results support the idea that PRPF8, AAR2, and EFTUD2 form an assembly intermediate in human cells and that some of the mutants are trapped at this stage."
3D affects PRPF8
| 2
| 2

reach
"For example, 3D polymerase from enterovirus 71 directly binds to pre-mRNA processing factor 8 (PRPF8) and disrupts the pre-mRNA splicing processes, contributing to the invasion of the virus (Liu et al., 2014)."

reach
"In the case of picornaviruses, it has been shown recently that the viral polymerase 3D binds to PRPF8, a core components of U5, and blocks mRNA maturation, with the consequent accumulation of the lariat intermediate [XREF_BIBR]."
2 |

No evidence text available

No evidence text available
4,4'-sulfonyldiphenol decreases the amount of PRPF8. 2 / 2
2 |

No evidence text available

No evidence text available
1 |
Valproic acid decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
Tungsten affects PRPF8
1 |
Tungsten decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
Triptonide affects PRPF8
1 |
Triptonide decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
Thiram affects PRPF8
1 |
Thiram decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
Sevoflurane affects PRPF8
1 |
Sevoflurane increases the amount of PRPF8. 1 / 1
1 |

No evidence text available

reach
"Mutagenesis of active site residues C1 and H169 abolished the binding of cisplatin to the Prp8 intein.In addition to metal-containing inhibitors, reactive nitrogen species compounds (DEA NONOate at 1.2 mM and 12 mM) and Angeli's salt at 2 mM and 20 mM) were found to inhibit splicing of the C. neoformans Prp8 intein in an in vitro Prp8 intein splicing assay, whereas H 2 O 2 (.8 and 8 mM) did not ."
1 |

No evidence text available
P.R86M variant affects PRPF8
| 1
P.R86M variant inhibits PRPF8. 1 / 1
| 1

reach
"It is conceivable that the p.R86M variant disrupts PRPF8 function, potentially leading to impaired splicing activity."
LncRNA affects PRPF8
| 1
LncRNA activates PRPF8. 1 / 1
| 1

reach
"Furthermore, lncRNA ASCO contributed to the assembly of key splicing composition PREMRNA PROCESSING 8 (PRP8) and SmD1, which influenced the binding of PRP8 to a subset of its pre-mRNA targets in Arabidopsis [63]."
1 |
Hsa-miR-532-3p decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
1 |
Hsa-miR-361-5p decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
1 |
Hsa-miR-27b-3p decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
1 |
Hsa-miR-196a-5p decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
1 |
Hsa-miR-16-5p decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
HBrr2 proteins affects PRPF8
| 1
PRPF8 binds hBrr2 proteins. 1 / 1
| 1

reach
"The level of free hBrr2 was unchanged (Fig. 2C, bottom panel), and both PRPF8 and hBrr2 proteins complexed in stoichiometric amounts suggesting that the human tri-snRNP complex is stable under physiological conditions in RPE cells."
Folic acid affects PRPF8
1 |
1 |

No evidence text available
Docking protein-1 affects PRPF8
| 1
Docking protein-1 binds PRPF8 and EIF4G1. 1 / 1
| 1

sparser
"As a polymeric protein, pp62 protein is co-assembled with another polymeric protein, pp220, to form the inner core shell of ASFV ( xref )."
Dicrotophos affects PRPF8
1 |
Dicrotophos increases the amount of PRPF8. 1 / 1
1 |

No evidence text available
Choline affects PRPF8
1 |
Choline methylates PRPF8. 1 / 1
1 |

No evidence text available
Bisphenol B affects PRPF8
1 |
Bisphenol B increases the amount of PRPF8. 1 / 1
1 |

No evidence text available
1 |
Arsenous acid increases the amount of PRPF8. 1 / 1
1 |

No evidence text available
1 |
Arsenic atom increases the amount of PRPF8. 1 / 1
1 |

No evidence text available
Ametryn affects PRPF8
1 |
Ametryn decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
ZBTB46 affects PRPF8
1 |
1 |

No evidence text available
YWHAQ affects PRPF8
1 |
1 |

No evidence text available
WWP2 affects PRPF8
1 |
1 |

No evidence text available
WWOX affects PRPF8
1 |
1 |

No evidence text available
WDR5 affects PRPF8
1 |
1 |

No evidence text available
VIM affects PRPF8
1 |
1 |

No evidence text available
VARS1 affects PRPF8
1 |
1 |

No evidence text available
UXT affects PRPF8
1 |
1 |

No evidence text available
USP36 affects PRPF8
1 |
1 |

No evidence text available
UHRF1 affects PRPF8
1 |
1 |

No evidence text available
UBE2I affects PRPF8
1 |
1 |

No evidence text available
UBC affects PRPF8
1 |
1 |

No evidence text available
U4/U6 di-snRNP proteins affects PRPF8
| 1
U4/U6 di-snRNP proteins activates PRPF8. 1 / 1
| 1

reach
"The subsequent association of the U4/U6 di-snRNP proteins and USP39 could promote the stable association of the PRP6 N-terminal regions along PRP8 , PRP8 α-helical bundle (PRP8 ), and PRP8 domains (Extended Data Fig. 4f)."
U2AF1 affects SF3B1
| 1
| 1

sparser
"Likewise, mutations in the snRNP components PRPF8, PRPF3, U2AF35, and SF3B1 cause diseases (e.g., retinitis pigmentosa for PRPF proteins, and myelodysplasia for U2AF35 and SF3B1) that are associated with broad changes in the production of splice variants (Chabot & Shkreta, xref )."
TXNL1 affects PRPF8
1 |
1 |

No evidence text available
TXNDC5 affects PRPF8
1 |
1 |

No evidence text available
TRIM55 affects PRPF8
1 |
1 |

No evidence text available
TRIM31 affects PRPF8
1 |
1 |

No evidence text available
TRIM28 affects PRPF8
1 |
1 |

No evidence text available
TPS-sab affects RBM22
| 1
| 1

sparser
"At 5’ SSs, RBM22 and PRPF8 were bound at the exonic end, which has been shown to be critical for splicesome assembly [ xref , xref ]."
TPM3 affects PRPF8
1 |
1 |

No evidence text available
TECPR1 affects PRPF8
1 |
1 |

No evidence text available
SRP9 affects PRPF8
1 |
1 |

No evidence text available
SOX2 affects PRPF8
1 |
1 |

No evidence text available
SNW1 affects CWC15
| 1
SNW1 binds CWC15 and PRPF8. 1 / 1
| 1

sparser
"Finally, PPIG interacts with SNW1, CWC15, and PRPF8, all through the isomerase domain ( xref )."
SNRNP200 affects LAP
| 1
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
SLC25A5 affects PRPF8
1 |
1 |

No evidence text available
SLC25A10 affects PRPF8
1 |

No evidence text available
SLC25A1 affects PRPF8
1 |
1 |

No evidence text available
SIRT6 affects PRPF8
1 |
1 |

No evidence text available
SF3B1 affects U2AF1
| 1
| 1

sparser
"Likewise, mutations in the snRNP components PRPF8, PRPF3, U2AF35, and SF3B1 cause diseases (e.g., retinitis pigmentosa for PRPF proteins, and myelodysplasia for U2AF35 and SF3B1) that are associated with broad changes in the production of splice variants (Chabot & Shkreta, xref )."
SERPINB6 affects PRPF8
1 |

No evidence text available
SEPTIN7 affects PRPF8
1 |
1 |

No evidence text available
SEC16A affects PRPF8
1 |
1 |

No evidence text available
S affects PRPF8
1 |
S binds PRPF8. 1 / 1
1 |

No evidence text available
RRM1 affects PRPF8
| 1
RRM1 activates PRPF8. 1 / 1
| 1

reach
"PRPF8, SNRNP200, GTPBP4, SMCHD1, DHX15, PRPF6, A8KAP3, DHX9 and EPRS were significantly reduced by RRM1 or ZnF1 deletion with no trend of> 2-fold for any other deletion mutant (Supplemental Table S4)."
RREB1 affects PRPF8
1 |
1 |

No evidence text available
RPS9 affects PRPF8
1 |
1 |

No evidence text available
RPS4X affects PRPF8
1 |
1 |

No evidence text available
RPS3 affects PRPF8
1 |
1 |

No evidence text available
RPS23 affects PRPF8
1 |
1 |

No evidence text available
RPS20 affects PRPF8
1 |
1 |

No evidence text available
RPS17 affects PRPF8
1 |
1 |

No evidence text available
RPS13 affects PRPF8
1 |
1 |

No evidence text available
RPS12 affects PRPF8
1 |
1 |

No evidence text available
RPLP1 affects PRPF8
1 |
1 |

No evidence text available
RPL9 affects PRPF8
1 |
1 |

No evidence text available
RPL8 affects PRPF8
1 |
1 |

No evidence text available
RPL38 affects PRPF8
1 |
1 |

No evidence text available
RPL26 affects PRPF8
1 |
1 |

No evidence text available
RPL23 affects PRPF8
1 |
1 |

No evidence text available
RPL21 affects PRPF8
1 |
1 |

No evidence text available
RPL14 affects PRPF8
1 |
1 |

No evidence text available
RPL12 affects PRPF8
1 |
1 |

No evidence text available
RPL10 affects PRPF8
1 |
1 |

No evidence text available
RNU12 affects PRPF8
1 |
1 |

No evidence text available
RCC2 affects PRPF8
1 |
1 |

No evidence text available
RC3H2 affects PRPF8
1 |
1 |

No evidence text available
RC3H1 affects PRPF8
1 |
1 |

No evidence text available
RBM8A affects PRPF8
1 |
1 |

No evidence text available
RBM6 affects PRPF8
1 |
1 |

No evidence text available
RBM22 affects TPS-sab
| 1
| 1

sparser
"At 5’ SSs, RBM22 and PRPF8 were bound at the exonic end, which has been shown to be critical for splicesome assembly [ xref , xref ]."
RANBP2 affects PRPF8
1 |
1 |

No evidence text available
RALY affects PRPF8
1 |
1 |

No evidence text available
RAB27A affects PRPF8
1 |
1 |

No evidence text available
R2TP affects EFTUD2
| 1
R2TP binds PRPF8 and EFTUD2. 1 / 1
| 1

sparser
"Depletion of U5 proteins and PRPF8 RP mutation both increase the association of PRPF8 and EFTUD2 with R2TP."
Pqbp1 affects PRPF8
1 |
1 |

No evidence text available
Pectins affects PRPF8
1 |
Pectins decreases the amount of PRPF8. 1 / 1
1 |

No evidence text available
PSME2 affects PRPF8
1 |
1 |

No evidence text available
PSMB2 affects PRPF8
1 |
1 |

No evidence text available
PRPF8 affects translation
| 1
| 1

reach
"However, this raises an interesting question: if μ2 only blocks translation, how can it induce such a sharp decrease in PRPF8 (80%), as recently described [16], during the course of a 16 h infection?"
PRPF8 affects prp16-R686I
| 1
PRPF8 inhibits prp16-R686I. 1 / 1
| 1

reach
"These prp8 alleles significantly suppress growth defects of prp16-302 allele (Fig. 4B), and most of them (prp8-F331L, Y356C, Y590C/F, K603I, K611I/T, and S613T) also correct growth defects of prp16-R686I, demonstrating the generality of these effects (Fig. 4C)."
PRPF8 affects proliferative migratory invasive hepatic astrocytes
| 1
PRPF8 activates proliferative migratory invasive hepatic astrocytes. 1 / 1
| 1

eidos
"Collectively , Prp8 promoted the proliferative , migratory and invasive abilities of hepatic astrocytes ."

reach
"Nevertheless, the observation that depletion of PRPF8 triggers necroptosis raises further important questions."
PRPF8 affects lysis
| 1
PRPF8 inhibits lysis. 1 / 1
| 1

sparser
"However, the plasmids p182, p186, and p220 (Lac+R+) could inhibit the visible lysis of all the 30 phages in S. typhimurium."

reach
"The recent discovery of a small molecule inhibitor of the Prp8 intein that selectively inhibits splicing without targeting proteases and inhibits the growth of intein-containing C. gattii and C. neoformans is a particularly exciting breakthrough that suggests intein inhibitors may have therapeutic benefits (Li et al., 2021)."
PRPF8 affects helicase
| 1
| 1

reach
"Thus, how BRCA2 inactivation may increase intracellular ROS levels remains an open question.A further clue to the link between BRCA2 deficiency and ROS accumulation comes from our observation that depletion of the R-loop helicase, SETX, or the spliceosome factor, PRPF8, also suffices to induce endogenous oxidative stress and mitochondrial defects (Figure 7)."
PRPF8 affects hBrr2 proteins
| 1
PRPF8 binds hBrr2 proteins. 1 / 1
| 1

reach
"The level of free hBrr2 was unchanged (Fig. 2C, bottom panel), and both PRPF8 and hBrr2 proteins complexed in stoichiometric amounts suggesting that the human tri-snRNP complex is stable under physiological conditions in RPE cells."
PRPF8 affects hBrr2
| 1
PRPF8 inhibits hBrr2. 1 / 1
| 1

reach
"PRPF8 RP patient mutations, through dysregulation of hBrr2 by PRPF8, therefore provide a valuable opportunity to delineate regulatory mechanisms of hBrr2 on human splicing in health and disease."
| 1

reach
"The knock-down of the spliceosomal components IK (72), CWC22 (73), PRP8 (74), BCAS2 (75), CRNKL1 (76) and AQR (77), as well as the splicing factor SRSF10 (78) reduced EU incorporation in U2OS cells."
PRPF8 affects docking protein-1
| 1
Docking protein-1 binds PRPF8 and EIF4G1. 1 / 1
| 1

sparser
"As a polymeric protein, pp62 protein is co-assembled with another polymeric protein, pp220, to form the inner core shell of ASFV ( xref )."
PRPF8 affects curcumin-induced apoptosis HCT116 cells
| 1
PRPF8 inhibits curcumin-induced apoptosis HCT116 cells. 1 / 1
| 1

eidos
"Subsequently , we repeated the assays outlined in Fig. 1 and found that PRP8 was not able to inhibit curcumin-induced apoptosis in HCT116 cells ( Fig. 2B-2E ) ."
PRPF8 affects cell viability cells
| 1
PRPF8 activates cell viability cells. 1 / 1
| 1

eidos
"CCK8 and colony formation assay revealed that loss of Prp8 reduced cell proliferation and viability in Hep3B cells ( P < 0.01 , Figure 3D and E ) ."
PRPF8 affects androgen receptors
| 1
PRPF8 leads to the deubiquitination of androgen receptors. 1 / 1
| 1

reach
"Additionally, knockdown of PRPF8 increases the polyubiquitination of endogenous androgen receptors [65], which could serve as a potential mechanism through which PRPF8 regulates androgen receptor activity."
PRPF8 affects ZBTB46
1 |
1 |

No evidence text available
PRPF8 affects YWHAQ
1 |
1 |

No evidence text available
PRPF8 affects WWP2
1 |
1 |

No evidence text available
PRPF8 affects WWOX
1 |
1 |

No evidence text available
PRPF8 affects WDR5
1 |
1 |

No evidence text available
PRPF8 affects VIM
1 |
1 |

No evidence text available
PRPF8 affects VARS1
1 |
1 |

No evidence text available
PRPF8 affects UXT
1 |
1 |

No evidence text available
PRPF8 affects USP36
1 |
1 |

No evidence text available
PRPF8 affects UHRF1
1 |
1 |

No evidence text available
PRPF8 affects UBE2I
1 |
1 |

No evidence text available
PRPF8 affects UBC
1 |
1 |

No evidence text available
PRPF8 affects U2AF1
| 1
| 1

sparser
"Likewise, mutations in the snRNP components PRPF8, PRPF3, U2AF35, and SF3B1 cause diseases (e.g., retinitis pigmentosa for PRPF proteins, and myelodysplasia for U2AF35 and SF3B1) that are associated with broad changes in the production of splice variants (Chabot & Shkreta, xref )."
PRPF8 affects U1/5′ss
| 1
Mutated PRPF8 inhibits U1/5′ss. 1 / 1
| 1

reach
"The fact that the U4-cs1 mutation, which blocks splicing at low temperature by hyperstabilizing the U4/U6 duplex [71] , becomes synthetically lethal in combination with either brr2 - 1 or prp28 - 1 mu[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects TXNL1
1 |
1 |

No evidence text available
PRPF8 affects TXNDC5
1 |
1 |

No evidence text available
PRPF8 affects TWIST1
| 1
PRPF8 activates TWIST1. 1 / 1
| 1

reach
"Knockout of the Rp13 proteasomal component impairs the ability of SCs to proliferate, survive, and differentiate, resulting in defective muscle regeneration ."
PRPF8 affects TRIM55
1 |
1 |

No evidence text available
PRPF8 affects TRIM31
1 |
1 |

No evidence text available
PRPF8 affects TRIM28
1 |
1 |

No evidence text available
PRPF8 affects TPS-sab
| 1
| 1

sparser
"At 5’ SSs, RBM22 and PRPF8 were bound at the exonic end, which has been shown to be critical for splicesome assembly [ xref , xref ]."
PRPF8 affects TPM3
1 |
1 |

No evidence text available
PRPF8 affects TECPR1
1 |
1 |

No evidence text available
PRPF8 affects SRP9
1 |
1 |

No evidence text available
PRPF8 affects SOX2
1 |
1 |

No evidence text available
PRPF8 affects SLC25A5
1 |
1 |

No evidence text available
PRPF8 affects SLC25A10
1 |

No evidence text available
PRPF8 affects SLC25A1
1 |
1 |

No evidence text available
PRPF8 affects SIRT6
1 |
1 |

No evidence text available
PRPF8 affects SERPINB6
1 |

No evidence text available
PRPF8 affects SEPTIN7
1 |
1 |

No evidence text available
PRPF8 affects SEC16A
1 |
1 |

No evidence text available
PRPF8 affects S
1 |
S binds PRPF8. 1 / 1
1 |

No evidence text available

reach
"Graziotto et al. and Farkas et al. demonstrated that PRPF3, PRPF8 and PRPF31 mutations could cause dysfunction of RPE XREF_BIBR XREF_BIBR."
PRPF8 affects RREB1
1 |
1 |

No evidence text available
PRPF8 affects RPS9
1 |
1 |

No evidence text available
PRPF8 affects RPS4X
1 |
1 |

No evidence text available
PRPF8 affects RPS23
1 |
1 |

No evidence text available
PRPF8 affects RPS20
1 |
1 |

No evidence text available
PRPF8 affects RPS17
1 |
1 |

No evidence text available
PRPF8 affects RPS13
1 |
1 |

No evidence text available
PRPF8 affects RPS12
1 |
1 |

No evidence text available
PRPF8 affects RPLP1
1 |
1 |

No evidence text available
PRPF8 affects RPL9
1 |
1 |

No evidence text available
PRPF8 affects RPL8
1 |
1 |

No evidence text available
PRPF8 affects RPL38
1 |
1 |

No evidence text available
PRPF8 affects RPL26
1 |
1 |

No evidence text available
PRPF8 affects RPL23
1 |
1 |

No evidence text available
PRPF8 affects RPL21
1 |
1 |

No evidence text available
PRPF8 affects RPL14
1 |
1 |

No evidence text available
PRPF8 affects RPL12
1 |
1 |

No evidence text available
PRPF8 affects RPL10
1 |
1 |

No evidence text available
PRPF8 affects RNaseH D10R-E48R
| 1
PRPF8 activates RNaseH D10R-E48R. 1 / 1
| 1

reach
"Thus, depletion of PRPF8 and PlaB treatment each cause an increase in chromatin bound RNaseH D10R-E48R, which is consistent with an accumulation of R-loops."
PRPF8 affects RNU12
1 |
1 |

No evidence text available
PRPF8 affects RNF113A
1 |
1 |

No evidence text available
PRPF8 affects RCC2
1 |
1 |

No evidence text available
PRPF8 affects RC3H2
1 |
1 |

No evidence text available
PRPF8 affects RC3H1
1 |
1 |

No evidence text available
PRPF8 affects RBM8A
1 |
1 |

No evidence text available
PRPF8 affects RBM6
1 |
1 |

No evidence text available
PRPF8 affects RBM22, and TPS-sab
| 1
| 1

sparser
"At 5’ SSs, RBM22 and PRPF8 were bound at the exonic end, which has been shown to be critical for splicesome assembly [ xref , xref ]."
PRPF8 affects RANBP2
1 |
1 |

No evidence text available
PRPF8 affects RALY
1 |
1 |

No evidence text available
PRPF8 affects RAB27A
1 |
1 |

No evidence text available
PRPF8 affects Pqbp1
1 |
1 |

No evidence text available
PRPF8 affects PSME2
1 |
1 |

No evidence text available
PRPF8 affects PSMB2
1 |
1 |

No evidence text available
PRPF8 affects PRCC
1 |
1 |

No evidence text available
PRPF8 affects PPP1CC
1 |
1 |

No evidence text available
PRPF8 affects POLR2E
1 |
1 |

No evidence text available
PRPF8 affects PKP1
1 |
1 |

No evidence text available
PRPF8 affects PKM
1 |
1 |

No evidence text available
PRPF8 affects PIP4K2C
1 |
1 |

No evidence text available
PRPF8 affects PGAM5
1 |
1 |

No evidence text available
PRPF8 affects PDIA6
1 |
1 |

No evidence text available
PRPF8 affects PB1
1 |
1 |

No evidence text available
PRPF8 affects PAGE4
1 |
1 |

No evidence text available
PRPF8 affects ORF57
1 |
1 |

No evidence text available
PRPF8 affects OBSL1
1 |
1 |

No evidence text available
PRPF8 affects NUPR1
1 |
1 |

No evidence text available
PRPF8 affects NT5C2
1 |
1 |

No evidence text available
PRPF8 affects NR2C2
1 |
1 |

No evidence text available
PRPF8 affects NOTCH1
1 |
1 |

No evidence text available
PRPF8 affects NAP1L4
| 1
PRPF8 decreases the amount of NAP1L4. 1 / 1
| 1

reach
"qRT–PCR revealed decreased expression of circNAP1L4 and increased expression of linear NAP1L4 under hypoxia, which was reversed by PRP8 siRNA transfection, suggesting that the output of circNAP1L4 and linear NAP1L4 was mediated by PRP8 under hypoxia (Figure 6C)."
PRPF8 affects NA
1 |
1 |

No evidence text available

reach
"For example, the U5 component PRPF8, required for a catalytic step in pre-mRNA splicing, has functionally reduced protein levels in many myelodysplastic syndromes because of mutations or deletions."
PRPF8 affects MYCN
1 |
1 |

No evidence text available
PRPF8 affects MYBBP1A
1 |
1 |

No evidence text available
PRPF8 affects MLKL
| 1
PRPF8 increases the amount of MLKL. 1 / 1
| 1

reach
"Surprisingly, PRPF8 KD led to a considerable amount of pMLKL in the absence of infection, revealing that the enhanced cell death observed with this KD (Figure 2B) could be attributable, at least in part, to necroptosis (Figure 3A,B)."
PRPF8 affects MIF
1 |
1 |

No evidence text available
PRPF8 affects MEN1
1 |
1 |

No evidence text available
PRPF8 affects MED12
1 |
1 |

No evidence text available
PRPF8 affects MCM5
1 |
1 |

No evidence text available
PRPF8 affects MARS1
1 |
1 |

No evidence text available
PRPF8 affects MAGOH
1 |
1 |

No evidence text available
PRPF8 affects M
1 |
PRPF8 binds M. 1 / 1
1 |

No evidence text available
PRPF8 affects LUC7L3
1 |
1 |

No evidence text available
PRPF8 affects LSM4
1 |
1 |

No evidence text available
PRPF8 affects LOXL2
1 |
1 |

No evidence text available
PRPF8 affects LMNA
1 |
1 |

No evidence text available
PRPF8 affects LGALS7B
1 |
1 |

No evidence text available
PRPF8 affects LDHB
1 |
1 |

No evidence text available
PRPF8 affects LARP7
1 |
1 |

No evidence text available
PRPF8 affects LAP
| 1
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
PRPF8 affects KRT8
1 |
1 |

No evidence text available
PRPF8 affects KRT18
1 |
1 |

No evidence text available
PRPF8 affects KRT15
1 |
1 |

No evidence text available
PRPF8 affects KIF23
1 |
1 |

No evidence text available
PRPF8 affects IQGAP1
1 |
1 |

No evidence text available
PRPF8 affects ILF2
1 |
1 |

No evidence text available
PRPF8 affects IGLC3
1 |
1 |

No evidence text available
PRPF8 affects HSPA9
1 |
1 |

No evidence text available
PRPF8 affects HSPA6
1 |
1 |

No evidence text available
PRPF8 affects HSP90AB1
1 |

No evidence text available
PRPF8 affects HNRNPCL2
1 |

No evidence text available
PRPF8 affects HEXIM1
1 |
1 |

No evidence text available
PRPF8 affects H3K9me3
| 1
PRPF8 activates H3K9me3. 1 / 1
| 1

reach
"Namely, we find that PRPF8 depletion and PlaB treatment cause a marked reduction in H3K9Ac and H4K16Ac, but not H3K9me3."
PRPF8 affects H2BC18
1 |
1 |

No evidence text available
PRPF8 affects H/ACA box snoRNAs
| 1
H/ACA box snoRNAs binds PRPF8. 1 / 1
| 1

reach
"In addition, we found increased binding of PRPF8 to C/D and H/ACA box snoRNAs in RP13 retinal cells."
PRPF8 affects GTF2I
1 |
1 |

No evidence text available
PRPF8 affects GOLGA4
1 |
1 |

No evidence text available
PRPF8 affects GLS
1 |
1 |

No evidence text available
PRPF8 affects GIGYF2
1 |
1 |

No evidence text available
PRPF8 affects FZR1
1 |
1 |

No evidence text available
PRPF8 affects FLG2
1 |
1 |

No evidence text available
PRPF8 affects EZH2
1 |
1 |

No evidence text available
PRPF8 affects ESR1
1 |
1 |

No evidence text available
PRPF8 affects ERCC6
1 |
1 |

No evidence text available
PRPF8 affects EPRS1
1 |
1 |

No evidence text available
PRPF8 affects ELOC
1 |
1 |

No evidence text available
PRPF8 affects EIF3K
1 |
1 |

No evidence text available
PRPF8 affects EIF2S3
1 |
1 |

No evidence text available
PRPF8 affects EEF1A1P5
1 |

No evidence text available
PRPF8 affects EBNA1BP2
1 |

No evidence text available
PRPF8 affects E-cadherin HCC Hep3B cells
| 1
PRPF8 inhibits E-cadherin HCC Hep3B cells. 1 / 1
| 1

eidos
"Conversely , Prp8 knockdown reduced the expression levels of N-cadherin and Vimentin , and increased the expression of E-cadherin in HCC Hep3B cells ( Figure 4C and D ) ."
PRPF8 affects DUSP2
1 |
1 |

No evidence text available
PRPF8 affects DPM1
1 |
1 |

No evidence text available
PRPF8 affects DNAJB4
1 |
1 |

No evidence text available
PRPF8 affects DHX30
1 |
1 |

No evidence text available
PRPF8 affects DENR
| 1
| 1

sparser
"Genes encoding proteins similar to NBS–LRR-type resistance proteins, such as r NBS41 , YR48 Nbs1-Pi9 , RGA3, RPP8 and DRP-RP13, were found in MQTL2.1, MQTL5.3, MQTL6.3, MQTL11.1, MQTL11.8 and MQTL11.9, respectively."
PRPF8 affects DDX46
1 |
1 |

No evidence text available
PRPF8 affects DARS1
1 |
1 |

No evidence text available
PRPF8 affects Cebpb
1 |
1 |

No evidence text available
PRPF8 affects Ccdc12
1 |
1 |

No evidence text available
| 1
Mutated PRPF8 activates Carcinogenesis. 1 / 1
| 1

reach
"Identifying specific splicing alterations in tumorigenesis driven by PRPF8 mutations could serve as biomarkers for early diagnosis and prediction of therapeutic responses."
PRPF8 affects CWC15
| 1
SNW1 binds CWC15 and PRPF8. 1 / 1
| 1

sparser
"Finally, PPIG interacts with SNW1, CWC15, and PRPF8, all through the isomerase domain ( xref )."
PRPF8 affects CUL7
1 |
1 |

No evidence text available
PRPF8 affects CSTPP1
1 |
1 |

No evidence text available
PRPF8 affects COPS2
1 |
1 |

No evidence text available
PRPF8 affects CHMP4B
1 |
1 |

No evidence text available
PRPF8 affects CEBPB
1 |
1 |

No evidence text available
PRPF8 affects CDKN1A
| 1
PRPF8 activates CDKN1A. 1 / 1
| 1

reach
"Functionally, PIRH2B KD partially rescues the reduction in cell numbers and upregulation of P21 caused by PRPF8 KD in hESCs."
PRPF8 affects CAPRIN1
1 |
1 |

No evidence text available
PRPF8 affects C9orf72
1 |
1 |

No evidence text available
PRPF8 affects BRD4
1 |
1 |

No evidence text available
PRPF8 affects BP
| 1
PRPF8 binds BP. 1 / 1
| 1

reach
"It then facilitates the delocalization of Prp8, which was binding the 5′-SS and BP to make it bind both 5′-SS and 3′-SS, and it stabilizes this new conformation."
PRPF8 affects BAG3
1 |
1 |

No evidence text available
PRPF8 affects ATP5F1B
1 |
1 |

No evidence text available
PRPF8 affects ATG5
1 |
1 |

No evidence text available
PRPF8 affects ASXL1
1 |
1 |

No evidence text available
PRPF8 affects ARSI
| 1
PRPF8 activates ARSI. 1 / 1
| 1

reach
"The constituents of the autonomous pathway, FCA, FY, FPA, the cleavage polyadenylation machinery components CstF64 and CstF77, and the spliceosome factor PRP8, promote the choice of proximal polyadeny[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
PRPF8 affects ALYREF
1 |
1 |

No evidence text available
PRPF8 affects ALDOA
1 |
1 |

No evidence text available
PRPF8 affects AHNAK
1 |
1 |

No evidence text available
PRPF3 affects U2AF1
| 1
| 1

sparser
"Likewise, mutations in the snRNP components PRPF8, PRPF3, U2AF35, and SF3B1 cause diseases (e.g., retinitis pigmentosa for PRPF proteins, and myelodysplasia for U2AF35 and SF3B1) that are associated with broad changes in the production of splice variants (Chabot & Shkreta, xref )."
PRCC affects PRPF8
1 |
1 |

No evidence text available
PPP1CC affects PRPF8
1 |
1 |

No evidence text available
POLR2E affects PRPF8
1 |
1 |

No evidence text available

sparser
"Trans-acting splicing mutations associated with adRP have also been found, and mutations in the pre-mRNA splicing factors PRPF3, PRPF8, PRPF31, and RP9 are associated with adRP in several populations."
| 1

sparser
"Among the genes involved in mRNA splicing, mutations in PRPC8 (human homolog of yeast pre-mRNA splicing factor C8), PRP31 (human homolog of yeast pre-mRNA splicing factor 31), HPRP3 (human homolog of yeast pre-mRNA splicing factor 3), PAP-1 (PIM-1 kinase), TOPORS (topoisomerase-I-binding arginine/serine-rich protein) and SNRNP200 (small nuclear ribonucleoprotein, 200 kDa) are associated with adRP [ xref - xref ], although the mechanisms behind the process remain unclear."
PKP1 affects PRPF8
1 |
1 |

No evidence text available
PKM affects PRPF8
1 |
1 |

No evidence text available
PIP4K2C affects PRPF8
1 |
1 |

No evidence text available
PHY1 affects PRPF8
| 1
PHY1 phosphorylates PRPF8. 1 / 1
| 1

sparser
"Protein kinase C and cAMP dependent protein kinase phosphorylate p220 of elF-4F at a more rapid rate than p25 of elF-4F (24)."
PGAM5 affects PRPF8
1 |
1 |

No evidence text available
PDIA6 affects PRPF8
1 |
1 |

No evidence text available
PBRM1 affects PRPF8
| 1
PBRM1 increases the amount of PRPF8. 1 / 1
| 1

reach
"Further investigation revealed that the expression of viral NS1 or PB1 triggered the elevation of PRPF8 levels [176]."
| PMC
PB1 affects PRPF8
1 |
1 |

No evidence text available
PAGE4 affects PRPF8
1 |
1 |

No evidence text available
ORF57 affects PRPF8
1 |
1 |

No evidence text available
OBSL1 affects PRPF8
1 |
1 |

No evidence text available
NUPR1 affects PRPF8
1 |
1 |

No evidence text available
NT5C2 affects PRPF8
1 |
1 |

No evidence text available
NR2C2 affects PRPF8
1 |
1 |

No evidence text available
NOTCH1 affects PRPF8
1 |
1 |

No evidence text available
NA affects PRPF8
1 |
1 |

No evidence text available
MYCN affects PRPF8
1 |
1 |

No evidence text available
MYBBP1A affects PRPF8
1 |
1 |

No evidence text available
MIF affects PRPF8
1 |
1 |

No evidence text available
MEN1 affects PRPF8
1 |
1 |

No evidence text available
MED12 affects PRPF8
1 |
1 |

No evidence text available
MCM5 affects PRPF8
1 |
1 |

No evidence text available
MARS1 affects PRPF8
1 |
1 |

No evidence text available
MAGOH affects PRPF8
1 |
1 |

No evidence text available
M affects PRPF8
1 |
PRPF8 binds M. 1 / 1
1 |

No evidence text available
LUC7L3 affects PRPF8
1 |
1 |

No evidence text available
LSM4 affects PRPF8
1 |
1 |

No evidence text available
LOXL2 affects PRPF8
1 |
1 |

No evidence text available
LMNA affects PRPF8
1 |
1 |

No evidence text available
LGALS7B affects PRPF8
1 |
1 |

No evidence text available
LDHB affects PRPF8
1 |
1 |

No evidence text available
LARP7 affects PRPF8
1 |
1 |

No evidence text available
LAP affects SNRNP200
| 1
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
KRT8 affects PRPF8
1 |
1 |

No evidence text available
KRT18 affects PRPF8
1 |
1 |

No evidence text available
KRT15 affects PRPF8
1 |
1 |

No evidence text available
KIF23 affects PRPF8
1 |
1 |

No evidence text available
IQGAP1 affects PRPF8
1 |
1 |

No evidence text available
ILF2 affects PRPF8
1 |
1 |

No evidence text available
IGLC3 affects PRPF8
1 |
1 |

No evidence text available
HSPA9 affects PRPF8
1 |
1 |

No evidence text available
HSPA6 affects PRPF8
1 |
1 |

No evidence text available
HSP90AB1 affects PRPF8
1 |

No evidence text available
HNRNPCL2 affects PRPF8
1 |

No evidence text available
HEXIM1 affects PRPF8
1 |
1 |

No evidence text available
H2BC18 affects PRPF8
1 |
1 |

No evidence text available
H/ACA box snoRNAs affects PRPF8
| 1
H/ACA box snoRNAs binds PRPF8. 1 / 1
| 1

reach
"In addition, we found increased binding of PRPF8 to C/D and H/ACA box snoRNAs in RP13 retinal cells."
GstD1 affects PRPF8
| 1
GstD1 activates PRPF8. 1 / 1
| 1

reach
"Furthermore, gstD1-GFP and p53 upregulation was also observed in imaginal disc cells overexpressing the pathogenic RP13-linked mutant variant of Prp8 protein (Drosophila Prp8 /human PRPF8 ) (Supplementary Figure 1H–M), suggesting a shared response to U5 snRNP malfunction, inflicted either by scarcity of the biogenesis factor or mutation in the core splicing factor."
GTF2I affects PRPF8
1 |
1 |

No evidence text available
GOLGA4 affects PRPF8
1 |
1 |

No evidence text available
GLS affects PRPF8
1 |
1 |

No evidence text available
GIGYF2 affects PRPF8
1 |
1 |

No evidence text available
FZR1 affects PRPF8
1 |
1 |

No evidence text available
FLG2 affects PRPF8
1 |
1 |

No evidence text available
EZH2 affects PRPF8
1 |
1 |

No evidence text available
ESR1 affects PRPF8
1 |
1 |

No evidence text available
ERCC6 affects PRPF8
1 |
1 |

No evidence text available
EPRS1 affects PRPF8
1 |
1 |

No evidence text available
ELOC affects PRPF8
1 |
1 |

No evidence text available
EIF4G1 affects docking protein-1
| 1
Docking protein-1 binds PRPF8 and EIF4G1. 1 / 1
| 1

sparser
"As a polymeric protein, pp62 protein is co-assembled with another polymeric protein, pp220, to form the inner core shell of ASFV ( xref )."
EIF3K affects PRPF8
1 |
1 |

No evidence text available
EIF2S3 affects PRPF8
1 |
1 |

No evidence text available
EFTUD2 affects R2TP
| 1
R2TP binds PRPF8 and EFTUD2. 1 / 1
| 1

sparser
"Depletion of U5 proteins and PRPF8 RP mutation both increase the association of PRPF8 and EFTUD2 with R2TP."
EFTUD2 affects LAP, PRPF8, and SNRNP200
| 1
EFTUD2 binds SNRNP200, LAP, and PRPF8. 1 / 1
| 1

sparser
"The proteomic analysis of the GFP IPs showed a strong association of PRPF8-LAP with its partners EFTUD2 and SNRNP200, and conversely, GFP-EFTUD2 strongly bound PRPF8 and SNRNP200."
EEF1A1P5 affects PRPF8
1 |

No evidence text available
EBNA1BP2 affects PRPF8
1 |

No evidence text available
E6 affects PRPF8
1 |
1 |

No evidence text available
1 |
Dietary Fats increases the amount of PRPF8. 1 / 1
1 |

No evidence text available
DUSP2 affects PRPF8
1 |
1 |

No evidence text available
DPM1 affects PRPF8
1 |
1 |

No evidence text available
DNAJB4 affects PRPF8
1 |
1 |

No evidence text available
DHX30 affects PRPF8
1 |
1 |

No evidence text available
DENR affects PRPF8
| 1
| 1

sparser
"Genes encoding proteins similar to NBS–LRR-type resistance proteins, such as r NBS41 , YR48 Nbs1-Pi9 , RGA3, RPP8 and DRP-RP13, were found in MQTL2.1, MQTL5.3, MQTL6.3, MQTL11.1, MQTL11.8 and MQTL11.9, respectively."
DDX50 affects DHX9, HNRNPC, PRPF8, SRPK1, SSRP1, and TOP2A
1 |

No evidence text available
DDX46 affects PRPF8
1 |
1 |

No evidence text available
DARS1 affects PRPF8
1 |
1 |

No evidence text available
Cebpb affects PRPF8
1 |
1 |

No evidence text available
Ccdc12 affects PRPF8
1 |
1 |

No evidence text available
CZF1 affects PRPF8
| 1
CZF1 activates PRPF8. 1 / 1
| 1

reach
"PRPF8, SNRNP200, GTPBP4, SMCHD1, DHX15, PRPF6, A8KAP3, DHX9 and EPRS were significantly reduced by RRM1 or ZnF1 deletion with no trend of> 2-fold for any other deletion mutant (Supplemental Table S4)."
CWC15 affects SNW1
| 1
SNW1 binds CWC15 and PRPF8. 1 / 1
| 1

sparser
"Finally, PPIG interacts with SNW1, CWC15, and PRPF8, all through the isomerase domain ( xref )."
CUL7 affects PRPF8
1 |
1 |

No evidence text available
CSTPP1 affects PRPF8
1 |
1 |

No evidence text available
COPS2 affects PRPF8
1 |
1 |

No evidence text available
CHMP4B affects PRPF8
1 |
1 |

No evidence text available
CEBPB affects PRPF8
1 |
1 |

No evidence text available
CAPRIN1 affects PRPF8
1 |
1 |

No evidence text available

No evidence text available
C9orf72 affects PRPF8
1 |
1 |

No evidence text available
BRD4 affects PRPF8
1 |
1 |

No evidence text available
BP affects PRPF8
| 1
PRPF8 binds BP. 1 / 1
| 1

reach
"It then facilitates the delocalization of Prp8, which was binding the 5′-SS and BP to make it bind both 5′-SS and 3′-SS, and it stabilizes this new conformation."
BAG3 affects PRPF8
1 |
1 |

No evidence text available
ATP5F1B affects PRPF8
1 |
1 |

No evidence text available
ATG5 affects PRPF8
1 |
1 |

No evidence text available
ASXL1 affects PRPF8
1 |
1 |

No evidence text available
ALYREF affects PRPF8
1 |
1 |

No evidence text available
ALDOA affects PRPF8
1 |
1 |

No evidence text available
AHNAK affects PRPF8
1 |
1 |

No evidence text available
ACIN1 affects DDX21, DHX15, MATR3, PRPF8, S100A8, and SON
| 1

sparser
"Calgranulin B was shown to interact directly with S100A8, ACIN1, DHX15, PRPF8, MATR3, DDX21, and SON (Figure xref )."
1 |

No evidence text available
1,2-dimethylhydrazine increases the amount of PRPF8. 1 / 1
1 |

No evidence text available
1 |

No evidence text available