IndraLab

Statements


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sparser
"In RNA sequencing, FN1-FGFR1 and FN1-FGF1 were not detected, but a novel NIPBL-BEND2 fusion gene was identified."

sparser
"Fusion genes FN1-FGFR1 and FN1-FGF1 have been detected in some PMTs, but the pathogenesis of PMTs without these fusion genes remains unclear."

sparser
"For example, an FN1FGFR1 fusion gene has been identified in several TIO tumors; this gene has been hypothesized to cause tumorigenesis in TIO through FGF23 binding, leading to autocrine or paracrine activation of the receptor tyrosine kinase. ( xref , xref ) Interestingly, FGFR1 fusion genes have been identified as pathogenic in the 8p11 myeloproliferative syndrome, breast cancer, glioblastoma, and lung squamous cell carcinoma. ( xref , xref ) Additionally, similar microRNA profiles were recently noted in osteosarcomas and TIO; both show upregulation of the biomarker miR‐197 and downregulation of miR‐20b, miR‐144, and miR‐335. ( xref ) Further genetic studies of TIO may improve our understanding of the disease and identify patients missed by currently available modalities."

sparser
"Genetic testing revealed a somatic FN1-FGFR1 translocation in the FGF23-producing tumor causing TIO; however, a germline PTEN mutation was not identified."

sparser
"Molecular testing demonstrated that the tumor harbored the recently described FN1-FGFR1 translocation, suggesting that FGFR1 signaling played a role in tumorigenesis."

sparser
"We detected gene fusions in ten cases, including three novel fusions, FN1-MERTK, FN1-NTRK1, and FN1-TEK, each in one case, recurrent FN1-FGFR2 fusion in five cases, FN1-FGFR1 in one case, and FGFR1-PLAG1 in one case."

sparser
"Recent studies have demonstrated FN1-FGFR1 and FN1-FGF1 gene fusions in PMT; however, approximately 50% of cases are negative for these fusions."

sparser
"The latter is overexpressed secondary to an FN1-FGFR1 gene fusion, which is found in nearly 50% of PMTs suggesting there are likely other tumorigenic mechanisms in these lesions xref ."

sparser
"A relevant finding in the study of PMT pathogenesis identified FN1 and FGFR1 translocations as a leading cause of FN1FGFR1 fusion protein in 60% of samples by RNA sequencing or fluorescence in situ hybridization (FISH). xref The FN1FGFR1 fusion gene would presumably be highly expressed since FN1 is an ubiquitously expressed extracellular protein and is driven by a strong promoter. xref In this way, FGF23 secretion would be up‐regulated to down‐regulate the levels of phosphate and other biomolecules associated with PMTs."

sparser
"There is now evidence that FN1-FGFR1 and FN1-FGF1 fusion genes are present in about half of tumors causing this paraneoplastic syndrome."

sparser
"Second, we could not determine whether the expression of Klotho and the presence of the FN1-FGFR1 or FN1-FGF1 fusion genes are mutually exclusive or not in FGF23-producing tumors."

sparser
"TIO is caused by mesenchymal tumours often described as hemangioperitomas, which secrete FGF23 and cause a paraneoplastic renal phosphate wasting syndrome with osteomalacia and muscle weakness. ( xref ) RNA-seq analysis of FGF23-producing tumours revealed fibronectin (FN)- FGF1 or FN-FGFR1 gene rearrangements, which may activate FGFR1 in an autocrine fashion that stimulates FGF23 production by these tumours. ( xref ) Increased KL expression may constitute a second positive feedback loop to increase FGF23 production in TIO tumours, suggesting that the autocrine stimulation of FGF23 and the manifestations of TIO may be KL-dependent, however this requires further study. ( xref )"

sparser
"Fibronectin 1-fibroblast growth factor receptor 1 (FN1-FGFR1) gene fusions have been identified as possible drivers in up to 40% of resected PMTs."

sparser
"The presumed function of the protein products of the FN1-FGFR1 and FN1-FGF1 fusion genes is the activation of FGFR1 ( xref )."

sparser
"A relevant finding in understanding its tumorigenesis was the identification of fibronectin 1 ( FN1 ) and fibroblast growth factor receptor‐1 ( FGFR1 ) translocations which led to an FN1FGFR1 fusion protein in 60% of studied PMTs by RNA sequencing or FGFR‐specific fluorescence in situ hybridization (FISH). xref Additional studies have confirmed this finding in a larger group of PMTs. xref In addition to the description of the FN1FGFR1 translocation, it has been recently reported that 6% of PMTs had an FN1 ‐fibroblast growth factor 1 ( FGF1 ) translocation. xref However, these findings still suggest the existence of the tumorigenic drivers behind the fusion‐negative cases, and the mutational landscape and genetic signatures of PMTs are yet to be elucidated."

sparser
"Reduced serum 1,25(OH) 2 D and elevated bone‐specific alkaline phosphatase can be used as diagnostic markers, and if measured, serum FGF23 is typically elevated. xref In a large TIO series, 48% of tumors exhibited evidence for translocations resulting in abnormal fusion proteins of fibronectin 1 (FN1) and either fibroblast growth factor receptor 1 (FGFR1) or fibroblast growth factor 1 (FGF1) (3/50 [6%] FN1FGFR1 and 21/50 [42%] FN1‐FGF1), hypothesized to generate an autocrine function loop. xref Complete removal of the tumor by wide resection or ablation is typically curative of the biochemical abnormalities with improvement in bone and muscle strength. xref However, these mesenchymal tumors are slow growing and may be difficult to localize."

sparser
"In addition, several gene fusions including the FN1FGFR1 fusion were identified (Table xref )."

sparser
"FN1-FGFR1 testing."

sparser
"Calcified chondroid neoplasms with FN1::FGFR1 or FGFR2 constitute a recently described category of mesenchymal neoplasms mostly encountered in the extremities and temporomandibular joint."

sparser
"Chromoplexy can result in gene fusion (e.g., EWSR1-ETS, BCLAF1-GRM1, SS18-SSX1, and FN1-FGFR1) or gene amplification in multiple cancer types [ xref , xref ]."

sparser
"The phosphaturic mesenchymal tumor, like SFT, presented prominent HPC-like vascular pattern; however, the presence of the distinctive calcified matrix, the absence of nuclear expression of STAT6 and the FN1-FGFR1 fusion genes allow distinction."

sparser
"Histological analysis was positive for FGF23 (CISH) and the FN1-FGFR1 transcriptional marker."

sparser
"FN1 is a component of the extracellular matrix and it is recurrently involved in in-frame fusion genes as the 5′ partner in FN1-ALK and FN1-FGFR1 in soft tissue tumors [ xref , xref ]."

sparser
"We have considered that false-negative Klotho staining because of sample deterioration, or the presence of FN1-FGFR1 or FN1-FGF1 fusion genes might explain the positive staining with p-Erk in Klotho negative samples."

sparser
"We found FN1 gene rearrangements by FISH in 2/5 cases, and a FN1-FGFR1 fusion by targeted RNA sequencing."

sparser
"In fact, we recently reported on a patient with a malignant, metastatic PMT that harbored the FN1-FGFR1 translocation [ xref ]."

sparser
"We report the use of the FGFR1–3 tyrosine kinase inhibitor infigratinib in a 66-year-old man with a phosphaturic mesenchymal tumor bearing the FN1FGFR1 fusion gene."

sparser
"Based on the presumptive role of FGFR1 signaling by chimeric FN1-FGFR1 proteins, the effectiveness of infigratinib, a FGFR1-3 tyrosine kinase inhibitor, was studied in an open-label, single-center, phase 2 trial."

sparser
"An FN1-FGFR1 fusion gene appears to cause some of these tumors ( xref )."

sparser
"Of note, mutation analysis of 395 known cancer-causing genes of one of the metastatic lesions found, in addition to the FN1-FGFR1 translocation, a frameshift mutation in PTEN ."

sparser
"While the currently described patient is PTEN mutation-negative, high levels of phosphorylated AKT and phosphorylated S6 were detected on immunohistochemical staining (data not shown), supporting the concept that the AKT pathway is activated in tumor cells, perhaps due to translocation-mediated signaling through the chimeric FN1-FGFR1 receptor."

sparser
"Recent studies suggest that fibronectin-fibroblast growth factor receptor 1 (FN1-FGFR1) translocations may be a driver of tumorigenesis."

sparser
"Surgical excision was performed by the orthopedic surgeon and molecular analysis of the surgical specimen at a tertiary care center specialized for soft tissue oncology was positive for an FN1-FGFR1 fusion gene."

sparser
"Fluorescent in situ hybridization (FISH) was performed on formalin-fixed paraffin-embedded samples (FFPE) using a validated, commercially available, research-grade FN1-FGFR1 -specific assay kit (CytoTest, Rockville, MD)."

sparser
"Recent work suggests novel FN1-FGFR1 translocations within these PMTs may drive tumorigenesis as well as FGF23 production [ xref , xref ]."

sparser
"Notably, the FN1-FGFR1 chimeric protein is predicted to preserve its ligand-binding domains, thus effectively establishing an autocrine tumorigenic stimulus [ xref ]."

sparser
"Our results suggest that this novel NIPBL-BEND2 fusion gene promotes cell proliferation possibly via the MYC pathway and might be one of the etiologies of PMTs other than FN1-FGFR1 or FN1-FGF1 ."

sparser
"Specifically, fusion of fibronectin 1 (FN1) with FGFR1 or FGF1 creates aberrant fusion genes FN1-FGFR1 and FN1-FGF1, which are overexpressed in 42% and 6% of PMT, respectively [ xref ], while aberrant α -Klotho (or less commonly β -Klotho) genes are overexpressed in 8 of 10 fusion-negative PMT [ xref ]."

sparser
"Patients with FN1-FGFR1 gene fusion overexpress FGF-23 and present with progressive manifestations of oncologic osteomalacia."

sparser
"The Cowden-associated hamartomas, however, were negative for the FN1-FGFR1 translocation, suggesting that etiology of these tumors was different from the PMT."

sparser
"In contrast, FISH performed on FFPE samples of the TIO-causing PMT showed positivity for the FN1-FGFR1 translocation as determined by thresholds proposed by Lee et al. (2015) [ xref ] ( xref )."

sparser
"To our knowledge, there is only one other case described in the literature with identical morphological features to PMT and FN1-FGFR1 gene fusion without documented osteomalacia or elevated FGF-23 xref ."