IndraLab

Statements


USP7 affects USP11
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"Since the AGPS sequence matches P/A/ExxS motifs known to bind USP7 directly, our results suggest that USP7 binds directly to USP11."

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"These results demonstrate that the USP11/USP7 complex regulates the deubiquitination of LCK.We then characterize how deubiquitination might regulate LCK."

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"NOTCH1 interactome analysis in T-ALL cells has identified both USP7 and USP11 as interactors, and we have recently demonstrated that USP7 and USP11 form a complex in T-ALL [5, 8]."

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"USP11 forms a complex with USP7 to deubiquitinate the oncogenic lymphocyte cell–specific protein-tyrosine kinase (LCK) and enhance its activity."

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"As USP7 and USP11 form a complex in T-ALL, future studies are warranted to dissect further the detailed contribution of USP7 and USP11 to NOTCH1 posttranslational regulation and stabilization.We then sought to determine whether USP11 could deubiquitinate NOTCH1 via ubiquitination assays."

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"It is also possible that USP7 binding to USP11 could inhibit its catalytic activity, since the USP7 binding site falls within an insert in the USP11 catalytic domain."

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"We focused on USP7 and USP11 among ATAD5-N bound USPs, because it was reported that USP7 deubiquitinates Ub–PCNA and that USP11 binds to USP7."

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"In this study, we have demonstrated a previously unidentified role for the deubiquitinase complex of USP7 and USP11 in regulating LCK kinase signaling and therapy response in T cell leukemia."

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"Sowa and colleagues indeed confirmed the interaction between USP11 and USP7."

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"The low quantity of copurified USP7 and USP11 with ATAD5 suggested that the interaction between ATAD5 and USP7USP11 is more transient than ATAD5–UAF1 interaction."
USP7 binds USP11 and PRC1. 6 / 6
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"USP7 and USP11 associate with other PRC1 components."

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"USP7 and USP11 are bound to chromatin and form part of the PRC1 complex."

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"To assess whether USP7 and USP11 associate with bona fide PRC1 complexes, nuclear extracts from FDFs ( xref ) and 293T cells (not shown) were subjected to size exclusion chromatography on a Superose 6 10/300 column, and individual fractions were analysed by SDS–PAGE and immunoblotting."

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"Both USP7 and USP11 interact with PRC1 [ xref ], and these USPs might form a complex [ xref ], suggesting possible inter-USP regulation, the implications of which would be interesting for USP biology."

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"In humans, USP7 and USP11 physically interact with members of PRC1 in vivo , such as Mel18, Bmi1 and Ring1."

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"Our data strongly suggest that USP7 and USP11 bind directly to several components of the PRC1 complex, as confirmed using purified recombinant proteins."
USP7 binds USP11 and LCK. 2 / 2
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"Thus, CUTLL1 cells were treated with DXM to evaluate the effect of GCs on the USP7/USP11-LCK complex."

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"We demonstrated that disruption of the USP7/USP11-LCK complex sensitizes T-ALL to GC treatment via NR3C1 up-regulation."
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"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

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"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."

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"In summary, in vitro assays indicated that USP11 enhances CRC cell proliferation, migration, and invasion, but showed no effect on apoptosis.3.3 USP11 enhances tumorigenesis and liver metastasis of CRC in vivo."

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"Conversely, depletion of USP11 inhibited H1299 cell proliferation and induced ferroptosis [143]."

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"Namely, USP11 has been shown to promote the proliferation and metastasis of hepatocellular carcinoma (HCC), but the underlying molecular basis is poorly understood."

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"Consistent with the rescue of NOTCH1 expression, ectopic expression of the USP11 WT, but not of the catalytically inactive form of USP11, partially rescued the proliferation inhibition induced by silencing of USP11 in T-ALL cells (Fig. 2H, and Supplementary Fig. 1)."

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"Functionally, USP11 mediated melanoma cell proliferation via the regulation of NONO levels because ablation of USP11 inhibits the proliferation which could be rescued by ectopic expression of NONO protein."

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"To investigate whether PPP1CA affects the oncogenic roles of USP11 in CRC, we used CCK-8 and transwell assays to investigate the effects of PPP1CA on USP11-promoted proliferation and migration of CRC cell lines."

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"We also demonstrated that USP11 promoted the melanoma cells proliferation and tumorigenesis via NONO."

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"Conversely, knockdown of PPP1CA could also partially decrease the effects of overexpression of USP11-promoted cell proliferation and migration in HCT8 cells."

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"Depletion of USP11 inhibits cell proliferation and induces ROS-mediated stress-induced ferroptosis, an effect that can be mitigated by overexpression of NRF2."

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"Furthermore, these promoting effects on cell proliferation and migration caused by increased expression of USP11 or PPP1CA could be weakened by the ERK1/2 inhibitor, SCH772984 (Selleck, Cat."

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"Physiologically, USP11 depletion suppresses cell proliferation and wound healing in lung epithelial cells, and these effects are reversed by E2F1 and PEG10 overexpression."

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"Functionally, USP11 mediated stabilization of p21 inhibits cell proliferation and tumorigenesis in vivo."

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"USP11 has an important impact on the development and progression of multiple cancers, and previous studies have shown that targeting USP11 can significantly inhibit the proliferation and migration of multiple cancers."

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"Knockdown of USP11 promotes cell proliferation, migration, and invasion in a YAP-dependent manner [36]."

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"USP11 depletion decreases DLBCL cell proliferation."

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"Ablation of USP11 or RAE1 reduces cell proliferation of U2OS cells."

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"Altogether, these results indicate that USP11 is a KLF4‐specific deubiquitinase that promotes KLF4 degradation.3.3 USP11 mediates cancer cell proliferation and tumorigenesis by promoting KLF4 instability."

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"Tanggang Deng et al. [32] identified that USP11 inhibits the proliferation of non-small cell lung cancer via deubiquitinating and stabilizing P21 (Fig. 4)."

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"Notably, other than a finding that loss of one allele of Usp11 in male mice destabilizes PTEN to promote mouse embryonic fibroblast (MEF) and prostate epithelial cell proliferation and tumorigenesis (31), all the findings on the role of USP11 in tumorigenesis and cell differentiation were achieved from cell culture-based systems."

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"In contrast, HOXC5 overexpression reversed the effect of proliferation and apoptosis induced by USP11 silencing."
USP11 affects MYC
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USP11 binds MYC.
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"DLGAP5 was found to facilitate the interaction between USP11 and MYC, promoting MYC-driven transcription of DLGAP5 itself, thereby creating a positive feedback loop."

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"Among these, USP11 scored the highest and is known to interact with MYC, although further studies are limited 49.Focusing on the interaction between USP11 and MYC, we conducted co-IP experiments and confirmed that USP11 interacts with MYC (Figure S10A-B)."

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"Endogenous co-IP revealed that MYC binds with both DLGAP5 and USP11 in BLCA cells (Figure 5B and Figure S10C)."

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"Conversely, the interaction between USP11 and MYC significantly decreased with DLGAP5 knockdown, whereas DLGAP5 overexpression enhanced this interaction (Figure 6B and Figure S14E)."

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"After GEM treatment, increased MYC levels enhance DLGAP5 transcription, which in turn promotes the binding of USP11 to MYC, stabilizing MYC and resisting the cytotoxic effects of GEM."

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"To validate the interaction between USP11 and MLF2, HEK293T cells co-transfected with FLAG-MLF2 and MYC-USP11 were used for immunoprecipitation; the results showed that MLF2 intensively interacted wit[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

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"To determine whether USP11 regulates the levels of MLF2 by impeding its ubiquitination, we transfected HEK293T cells with FLAG-MLF2, HA-Ub, MYC-USP11, and MYC-USP11-C318A and performed the immunopreci[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

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"~73% (8,305 of 11,316) of c-Myc peaks overlapped with HA-USP11-WT peaks (Fig. 5N), suggesting the interaction between USP11 and c-Myc on select c-Myc target genes."

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"As shown in Figure 4A , PB2, PA, and NP specifically co-precipitated with Myc-USP11 (lanes 3, 9, and 12, respectively)."

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"Co-immunoprecipitation (Co-IP) of Myc-USP11 with SFB-SPRTN full-length (FL) or ΔSprT, ΔSH, ΔPIP, ΔUBZ, E112A catalytic inactive, and Y117C (SPRTN mutation identified in RJALS patients) mutant constructs showed that SPRTN-USP11 interaction was lost with deletion of the N-terminal SprT domain of SPRTN ( xref A )."
USP11 increases the amount of MYC.
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USP11 increases the amount of MYC. 6 / 6
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"USP11 Promotes Expression of AR and c-Myc mRNA by Deubiquitinating H2A-Ub on Their Promoters.."

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"Our RNA-seq and qRT-PCR analyses indicate that USP11 promotes expression of AR and c-Myc mRNAs (Fig. 2)."

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"Our study revealed mechanisms by which USP11 up-regulates levels and activities of AR and c-Myc."

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"Here, we find that USP11 up-regulates AR and c-Myc levels through two mechanisms, including deubiquitination of AR and c-Myc proteins to increase their stability, and deubiquitination of H2A-Ub on AR and c-Myc promoters to enhance their transcription.Our findings differ from a reported function of USP11 as a tumor suppressor in PCa (21), a conclusion based on findings that USP11 knockout up-regulates PTEN and inhibits oncogene-induced fibroblast transformation or tumorigenesis in a TRAMP prostate tumor model."

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"USP11 KD in AR-positive Rv1, C4-2, or VCaP cells decreased AR mRNA levels (Fig. 2I), while USP11 KD decreased c-Myc transcript levels both in these lines and in AR-negative DU145 cells (Fig. 2J)."

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"Reexpression of wild-type USP11 in USP11-KD cells (designated USP11 cells) fully restored AR and c-Myc levels, whereas reexpression of the corresponding catalytic-inactive mutant of USP11 in USP11-KD cells (designated USP11 cells) only slightly increased AR and c-Myc protein levels (SI Appendix, Fig. S5K)."
USP11 inhibits MYC.
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USP11 inhibits MYC. 5 / 5
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"As examples, USP11 KD decreased c-Myc peak signals on the promoters of CDC6, MKI67, MCM3 (Fig. 3L) and other c-Myc target genes (SI Appendix, Fig. S3C)."

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"The short half-life of c-Myc (~15 min) did not allow us to assess whether USP11 KD would reduce the c-Myc half-life.Overall, these results support the idea that both AR and c-Myc are USP11 substrates and that their deubiquitination by USP11 increases their stability and protein levels."

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"To determine whether USP11 loss inhibits PCa cell growth via effects on AR and/or c-Myc, we reexpressed AR, c-Myc, or both in USP11-KD VCaP cells to levels seen in control cells (Fig. 6A)."

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"USP11 Can be Targeted to Inhibit AR and c-Myc Activities in PCa Cells.."

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"Accordingly, RNA-seq analysis showed that USP11 KD decreased c-Myc (77% inhibition) and AR (43% inhibition) transcript levels (SI Appendix, Fig. S2 F and G), indicating that USP11 promotes their expression."
USP11 decreases the amount of MYC.
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USP11 decreases the amount of MYC. 5 / 5
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"Similarly, USP11 also showed enrichment on promoter regions of the c-Myc target genes CCNE2, CDK4, E2F2, and TERT (SI Appendix, Fig. S5F), and USP11 KD increased H2A-Ub levels and decreased c-Myc levels on these targets (SI Appendix, Fig. S5 G and H)."

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"USP11 KD significantly reduced AR and c-Myc protein levels in Rv1 cells (SI Appendix, Fig. S5K)."

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"Our results show that USP11 KD decreases AR and c-Myc levels and inhibits PCa cell growth (Fig. 1 G–M)."

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"USP11 KD in AR-positive Rv1, C4-2, or VCaP cells decreased AR mRNA levels (Fig. 2I), while USP11 KD decreased c-Myc transcript levels both in these lines and in AR-negative DU145 cells (Fig. 2J)."

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"Consistently, USP11 KD in five PCa lines decreased AR and/or c-Myc protein levels (Fig. 1 G–I and SI Appendix, Fig. S1 E and F)."
USP11 deubiquitinates MYC.
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USP11 deubiquitinates MYC. 4 / 4
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"We next asked whether USP11 deubiquitinates AR and c-Myc proteins."

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"In this study, we found that the deubiquitinase USP11 deubiquitinates both AR and c-Myc and plays a tumor-promoting role in PCa."

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"USP11 Deubiquitinates and Stabilizes AR and c-Myc Protein to Increase Their Levels.."

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"A recent article reported that USP11 can deubiquitinate and stabilize the MYC and AR proteins, thereby promoting prostate cancer progression 65."
USP11 activates MYC.
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USP11 activates MYC. 2 / 2
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"In comparable analysis, USP11 overexpression increased c-Myc half-life from ~15 min (control) to 45 min (Fig. 4 Q and R)."

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"USP11 promotes prostate cancer progression by up-regulating AR and c-Myc activity."
USP11 affects CDKN1A
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USP11 binds CDKN1A.
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"In the nucleus, USP11 binds to p21, catalyzes the removal of polyubiquitin chains conjugated onto p21, and stabilizes p21 protein."

sparser
"To determine whether USP11 and p21 directly interact with each other, we generated and purified recombinant USP11 and p21."

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"Purified GST-p21, but not the GST control, was able to bind to GST-USP11 under cell-free conditions ( xref ), demonstrating a direct interaction between USP11 and p21."

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"Collectively, these results suggest that USP11 physically interacts with p21 in vivo and in vitro."

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"To determine key amino acid residues for the interaction of USP11 with p21, we constructed a catalytically inactive USP11 mutant (C275S/C283S) and multiple p21 mutants with a single point mutation."

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"The co-IP assays revealed that the N-terminal region (amino acids 1–90) of p21 was critical for the interaction between USP11 and p21 ()."

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"Given the identified interaction of USP11 with p21, we next investigated whether USP11 affects the steady-state levels of p21."

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"Furthermore, we analyzed the binding of USP11 to p21 under DNA damage condition."

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"Interestingly, the amount of USP11-binding p21 was significantly increased in HCT116 WT cells after treatment with genotoxic agents and vice versa ( xref and), indicating that DNA damage can enhance the interaction between USP11 and p21."

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"Therefore, we explored the binding substrate of USP11 in depth.Except for Beclin1 and p53, USP11 can also bind to PPP1CA, p21, NONO, and KLF4, thereby playing a role in cancer, DNA damage, and liver disease by mediating their deubiquitination and stabilization."
USP11 deubiquitinates CDKN1A.
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USP11 deubiquitinates CDKN1A. 7 / 8
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"Deubiquitylation and stabilization of p21 by USP11 is critical for cell-cycle progression and DNA damage responses."

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"Recent studies have revealed that USP11 deubiquitinates and stabilizes p21 protein under physiological conditions, as well as in response to DNA damage [17]."

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"We further presumed that RanBPM might promote the interaction between USP11 and p21, and regulate USP11-dependent deubiquitination of p21."

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"Notably, USP11 plays a key role in DNA damage repair depending on its catalytic activity, for example, Xia Ting et al. [20] found that USP11 acts as a histone deubiquitinase in chromatin reorganization during DNA repair, Palak Shah et al. [21] found that USP11 regulates UV-induced DNA damage repair by deubiquitinating XPC, and Tanggang Deng et al. [32] identified that the deubiquitylation and stabilization of p21 by USP11 is essential for cell cycle progression and DNA damage responses."

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"USP11 may stimulate tumorigenesis by deubiquitinating cIAP2, NONO, NF90, E2F1, or cytoplasmic p21; however, it may also inhibit tumorigenesis through stabilizing PML, Mgl-1, PTEN, ARID1A, or nuclear p21 (29, 30)."

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"For instance, USP11 can reverse the ubiquitination and degradation of p21, a cyclin-dependent kinase inhibitor, and hence mediate the DNA damage response and apoptosis."

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"As a result, USP11 reverses p21 polyubiquitylation and degradation mediated by SCF SKP2, CRL4 CDT2, and APC/C CDC20 in a cell-cycle-independent manner."
USP11 inhibits CDKN1A.
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USP11 inhibits CDKN1A. 2 / 2
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"Loss of USP11 causes the destabilization of p21 and induces the G1/S transition in unperturbed cells."

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"Previous study has reported that USP11 levels varies with cell cycles, and inhibits the ubiquitylation and proteasomal degradation of p21 in a cell-cycle–independent manner."
USP11 affects CDH1
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USP11 binds CDH1.
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"In addition, we detected the interaction between USP11 and E-cadherin by immunoprecipitation assay using Flag antibody in Flag-USP11 overexpressed HEK293 T cells or T47D cells ( xref , B and C )."

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"We discovered that USP11 is bound to E-cadherin through its C-terminal region."

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"Since E-cadherin is a transmembrane protein holding a cytoplasmic domain for signal transduction and interacting with intracellular proteins, such as p120 and β-catenin ( xref , xref ), we wondered whether USP11 bound to the E-cadherin cytoplasmic region."

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"To further confirm the interaction between USP11 and E-cadherin, we generated GST fusion proteins containing N-terminal (residues 1–300 amino acids, termed GST-USP11-N) and C-terminal (residues 301–963 amino acids, termed GST-USP11-C) sequences of USP11 ( xref C )."

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"USP11 binds to E-cadherin."

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"In addition, we detected the interaction between USP11 and E-cadherin by immunoprecipitation assay using Flag antibody in Flag-USP11 overexpressed HEK293 T cells or T47D cells (Fig. S3, B and C)."

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"To further confirm the interaction between USP11 and E-cadherin, we generated GST fusion proteins containing N-terminal (residues 1–300 amino acids, termed GST-USP11-N) and C-terminal (residues 301–963 amino acids, termed GST-USP11-C) sequences of USP11 (Fig. 3C)."

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"Together, these results indicate that USP11 binds to E-cadherin and that this interaction is mainly mediated by the C-terminal region of USP11."

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"We revealed that USP11 bound to and deubiquitinated E-cadherin."

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"USP11 binds to E-cadherin."
USP11 increases the amount of CDH1.
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USP11 increases the amount of CDH1. 10 / 10
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"We generated Usp11 knock-out mice and found that deletion of Usp11 reduced the expression of E-cadherin and promoted DNA damage in MECs."

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"We discovered that loss of Usp11 reduced the expression of E-cadherin in MECs; therefore, we wanted to investigate if Usp11 controls the differentiation of luminal-type breast cancer cells."

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"Western blotting analysis revealed that, relative to control (Flag), overexpression of Flag-USP11, but not Flag-USP11-C318 A, significantly enhanced the expression of E-cadherin in tumor cells (Figs."

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"Notably, over-expression of either Flag-USP11 or Flag-USP11-C318 A did not induce significant changes in Cdh1 mRNA expression (Fig. S2G)."

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"We found that, relative to Usp11 MECs, Usp11 MECs again expressed a significantly reduced level of E-cadherin, but not Vimentin (Fig. 2, E and F), confirming that the loss of Usp11 inhibits the expression of E-cadherin in MECs."

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"Usp11 positively regulates the expression of E-cadherin in mammary epithelial and tumor cells."

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"In this article, we found that the deletion of Usp11 in mice reduced the expression of E-cadherin and promoted DNA damage in MECs."

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"We observed that the loss or depletion of Usp11 eliminated E-cadherin expression in MECs and tumor cells, and overexpression of WT USP11, not a deubiquitinase-inactive mutant form of USP11, promoted the expression of E-cadherin protein in tumor cells in vitro and in vivo."

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"Interestingly, depletion of another BRCA1-interacting protein, BRCA2, results in defects of DNA repair but not that of differentiation in mammary cells (14), which suggests that not all intrinsic DNA repair defects induced by deficiency of BRCA1-interacting proteins promote or are associated with aberrant differentiation.In this study, we discovered that loss of USP11 reduced the expression of E-cadherin and induced DNA damage in MECs and that overexpression of USP11 promoted luminal differentiation, enhanced DNA damage repair, and suppressed tumorigenesis."

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"Notably, Usp11 MECs expressed comparable Cdh1 mRNA levels relative to Usp11 MECs (Fig. S2B), suggesting that the reduction of E-cadherin protein level by Usp11 loss in MECs is unlikely regulated at the transcriptional level.We then performed whole-mount analysis for mouse mammary glands at different ages."
USP11 deubiquitinates CDH1.
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USP11 deubiquitinates CDH1. 5 / 5
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"To examine whether USP11 deubiquitinates E-cadherin, we checked the effect of USP11 deficiency on E-cadherin protein turnover."

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"Our findings provide compelling genetic and biochemical evidence that USP11 not only promotes DNA damage repair but also deubiquitinates E-cadherin and maintains the luminal features of mammary tumor cells, leading to the suppression of breast cancer.The function of USP11 in controlling tumor development and progression is very puzzling."

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"USP11 deubiquitinates E-cadherin and maintains the luminal fate of mammary tumor cells to suppress breast cancer."

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"Our findings provide compelling genetic and biochemical evidence that USP11 not only promotes DNA damage repair but also deubiquitinates E-cadherin and maintains the luminal feature of mammary tumor cells, thereby suppressing luminal breast cancer."

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"We revealed that USP11 bound to and deubiquitinated E-cadherin."
USP11 deubiquitinates CDH1 on K738. 4 / 4
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"USP11 deubiquitinates E-cadherin at K738."

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"Mechanistically, we found that Usp11 stimulated the expression of E-cadherin dependent on its deubiquitinase activity and that USP11 deubiquitinated E-cadherin at K738."

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"Mechanistically, we found that USP11 enhanced the protein expression of E-cadherin dependent on its deubiquitinase activity and that USP11 deubiquitinated E-cadherin at K738."

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"These results not only confirm that K738 is required for ubiquitination of full-length human E-cadherin but also suggest that USP11 deubiquitinates E-cadherin at K738 (removes ubiquitin from E-cadherin on K738)."
USP11 decreases the amount of CDH1.
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USP11 decreases the amount of CDH1. 6 / 6
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"We discovered that loss of Usp11 reduced the expression of E-cadherin in MECs; therefore, we wanted to investigate if Usp11 controls the differentiation of luminal-type breast cancer cells."

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"We found that, relative to control, Usp11 KD clearly reduced the expression of E-cadherin in luminal tumor cells (Figs."

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"Compared with cells treated with BLM alone, the combination of BLM and USP11 dramatically decreased the expression of E-cadherin (Figure 5B; lane 4 vs. lane 2)."

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"We found that, relative to Usp11 MECs, Usp11 MECs again expressed a significantly reduced level of E-cadherin, but not Vimentin (Fig. 2, E and F), confirming that the loss of Usp11 inhibits the expression of E-cadherin in MECs."

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"We observed that the loss or depletion of Usp11 eliminated E-cadherin expression in MECs and tumor cells, and overexpression of WT USP11, not a deubiquitinase-inactive mutant form of USP11, promoted the expression of E-cadherin protein in tumor cells in vitro and in vivo."

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"Interestingly, depletion of another BRCA1-interacting protein, BRCA2, results in defects of DNA repair but not that of differentiation in mammary cells (14), which suggests that not all intrinsic DNA repair defects induced by deficiency of BRCA1-interacting proteins promote or are associated with aberrant differentiation.In this study, we discovered that loss of USP11 reduced the expression of E-cadherin and induced DNA damage in MECs and that overexpression of USP11 promoted luminal differentiation, enhanced DNA damage repair, and suppressed tumorigenesis."
USP11 inhibits CDH1.
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USP11 inhibits CDH1. 3 / 3
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"Additionally, we observed that depletion of USP11 enhanced the level of the ubiquitinated form of E-cadherin in human T47D cells (Fig. 4E) or mouse luminal cancerous cells (Fig. S4B) compared to the control.Hartsock and Nelson have discovered that K754 and K833 in the JuxtaMembrane Domain (JMD) of mouse E-cadherin are required for ubiquitination and proteasomal degradation of JMD (44)."

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"We found that overexpression of Flag-USP11 drastically reduced the level of the ubiquitinated form of E-cadherin compared to that of the Flag control; however, overexpression of Flag-USP11-C318 A did not change the level of the ubiquitinated form of E-cadherin relative to that of the Flag control (Figs 4C and S4A)."

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"In sum, these results indicate that Usp11 prevents E-cadherin from degradation and promotes DNA damage repair to suppress tumorigenesis, which is dependent on its deubiquitinase activity."
USP11 activates CDH1.
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USP11 activates CDH1. 3 / 3
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"Cycloheximide (CHX) chase experiments showed that the depletion of USP11 accelerated the degradation of E-cadherin protein in T47D cells compared to the control group (Figs 4, A and B)."

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"These data suggest that Usp11 is dispensable for mammary gland development and that Usp11 loss reduced E-cadherin is not sufficient to result in developmental defects."

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"As USP11 positively regulated the E-cadherin protein in mammary tumor cells, it was of interest to know whether USP11 regulated mammary tumor cell adhesion."
USP11 affects PPP1CA
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USP11 binds PPP1CA.
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"Mechanistically, nodularin‐R attenuates the interaction between PPP1CA and USP11 (deubiquitinating enzyme), potentially promoting PPP1CA degradation."

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"These findings indicated that USP11 and PPP1CA could interact both endogenously and exogenously."

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"Mechanistically, nodularin-R attenuates the interaction between PPP1CA and USP11 (deubiquitinating enzyme), potentially promoting PPP1CA degradation."

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"Moreover, the USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway."

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"Given that USP11 has been reported to stabilise PPP1CA by deubiquitinating it and shielding it from proteasome‐mediated degradation [ xref ], our aim was to deepen our understanding of how nodularin‐R influences the interaction between USP11 and PPP1CA."

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"Additionally, the total van der Waals force of the main chains within the USP11PPP1CA‐Nodularin‐R complex increased from −445.634 kcal/mol (in the USP11PPP1CA complex) to −396.537 kcal/mol."

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"The USP11/PPP1CA complex promotes CRC growth and metastasis, and may represent a promising potential prognostic marker.Alt-text: Unlabelled Box1 Introduction."

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"Furthermore, the free binding energy within the USP11PPP1CA‐Nodularin‐R complex increased from −68.92 ± 3.96 kcal/mol (in the USP11PPP1CA complex) to −28.13 ± 3.94 kcal/mol (Table  xref )."

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"The results revealed that USP11 can form a complex with PPP1CA in HCT116 cells (Fig. 4c)."

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"Moreover, the diminished interaction between PPP1CA and USP11, along with the increased proteasome‐mediated degradation of PPP1CA induced by nodularin‐R, likely contribute significantly to this inhibition."
USP11 activates PPP1CA.
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USP11 activates PPP1CA. 9 / 9
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"USP11 promotes CRC progression by stabilizing the protein phosphatase 1 catalytic subunit alpha (PPP1CA) via deubiquitination."

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"USP11 is involved in the development and progression of multiple tumors XREF_BIBR - XREF_BIBR, and we have found that USP11 could promote CRC by stabilizing PPP1CA through deubiquitination XREF_BIBR."

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"USP11 promoted tumor growth and metastasis in CRC via the ERK/MAPK pathway by stabilizing PPP1CA, suggesting USP11 is a potential prognostic marker."

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"In colorectal cancer, USP11 promotes tumor growth and metastasis via the ERK/MAPK pathway by stabilizing PPP1CA [18]."

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"USP11 promotes colorectal cancer growth and metastasis by stabilizing PPP1CA, activating the ERK/MAPK pathway, and insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) signaling (151), and interacting with nuclear factor 90 (NF90) to promote HCC proliferation and metastasis (152)."

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"The findings of the present study contribute to the search for novel biomarkers related to the RAS/RAF/MAPK pathway, and may provide useful information regarding the best strategy for mCRC treatment and may improve the prognosis of patients with advanced stage CRC.In summary, the present study demonstrated that USP11 activated the ERK/MAPK signaling pathway by stabilizing PPP1CA during the development of CRC."

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"USP11 promotes tumor growth and metastasis in CRC via the ERK/MAPK pathway by stabilizing PPP1CA[66,67]."

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"Another study has the same point, namely, that the overexpression of USP11 promotes metastasis of CRC cells both in vitro and in vivo by activating the ERK/MAPK pathway and stabilizing PPP1CA."

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"Interestingly, the findings of another study indicated that USP11 promotes growth and metastasis by stabilizing PPP1CA in colorectal cancer, suggesting that DUBs could have opposite functions via regulating different proteins in diverse diseases25."
USP11 increases the amount of PPP1CA.
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USP11 increases the amount of PPP1CA. 4 / 4
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"We found that USP11 knockdown reduced PPP1CA expression, while USP11 overexpression slightly increased PPP1CA expression (Fig. 4b)."

reach
"Therefore, we investigated whether USP11 could stabilize PPP1CA expression via deubiquitination.We found that transfection of overexpression or knockdown of USP11 in HCT8 or HCT116 cells increased or decreased PPP1CA expression, respectively."

reach
"The present study revealed that USP11 could promote CRC through stabilizing PPP1CA expression via deubiquitination."

reach
"Neither knockdown nor overexpression of USP11 caused significant changes in PPP1CA mRNA levels by qRT-PCR (Fig. 5b)."
USP11 deubiquitinates PPP1CA.
1 | 3
USP11 deubiquitinates PPP1CA. 3 / 4
1 | 3

reach
"For example, USP11 promotes growth and metastasis of colorectal cancer by deubiquitinating and stabilizing PPP1CA (16)."

reach
"Ubiquitination assay further revealed that USP11 overexpression significantly inhibited poly-ubiquitination of PPP1CA protein (Fig. 5c)."

reach
"Mechanically, we revealed that USP11 could activate the ERK/MAPK signaling pathway by deubiquitinating and stabilizing PPP1CA, resulting in the malignant development of CRC."
USP11 decreases the amount of PPP1CA.
| 2
USP11 decreases the amount of PPP1CA. 2 / 2
| 2

reach
"Conversely, knockdown of USP11 by shRNA in HCT116 cells increased the poly-ubiquitination levels of PPP1CA protein (Fig. 5d)."

reach
"We found that USP11 knockdown reduced PPP1CA expression, while USP11 overexpression slightly increased PPP1CA expression (Fig. 4b)."
| 1 35

reach
"Namely, USP11 has been shown to promote the proliferation and metastasis of hepatocellular carcinoma (HCC), but the underlying molecular basis is poorly understood."

reach
"USP11 promotes the stability of IGF2BP3 to increase the colorectal cancer metastasis [99]."

reach
"Sun et al[26] also demonstrated that USP11 promotes the growth and metastasis of CRC via PPP1CA-mediated activation of the ERK/MAPK signaling pathway."

reach
"Taken together, these results indicate that the E2F1 and USP11 signal axis promotes HCC proliferation and metastasis and inhibits autophagy, which provides an experimental basis for the treatment of HCC."

reach
"We also demonstrated that overexpression of USP11 promoted proliferation and metastasis of CRC cells in vitro and in vivo, indicating that USP11 plays an important role in the development of CRC."

reach
"While USP11 is known to promote HCC metastasis and proliferation, the precise mechanisms, especially those related to cancer metabolism, remain unclear."

reach
"Higher levels of USP11 enhance lipogenesis, proliferation, and metastasis in HCC cells."

reach
"This suggested that USP11 promotes CRC invasion and metastasis."

reach
"USP11 potentiates HGF/AKT signaling and drives metastasis in hepatocellular carcinoma."

reach
"In vitro assays also verified that USP11 overexpression could enhance the invasive and metastasis capabilities of CRC cells, especially to the liver in vivo."
CDKN1A affects USP11
9 | 3 24
9 | 3 24

reach
"In the nucleus, USP11 binds to p21, catalyzes the removal of polyubiquitin chains conjugated onto p21, and stabilizes p21 protein."

sparser
"To determine whether USP11 and p21 directly interact with each other, we generated and purified recombinant USP11 and p21."

sparser
"Purified GST-p21, but not the GST control, was able to bind to GST-USP11 under cell-free conditions ( xref ), demonstrating a direct interaction between USP11 and p21."

sparser
"Collectively, these results suggest that USP11 physically interacts with p21 in vivo and in vitro."

sparser
"To determine key amino acid residues for the interaction of USP11 with p21, we constructed a catalytically inactive USP11 mutant (C275S/C283S) and multiple p21 mutants with a single point mutation."

sparser
"The co-IP assays revealed that the N-terminal region (amino acids 1–90) of p21 was critical for the interaction between USP11 and p21 ()."

sparser
"Given the identified interaction of USP11 with p21, we next investigated whether USP11 affects the steady-state levels of p21."

sparser
"Furthermore, we analyzed the binding of USP11 to p21 under DNA damage condition."

sparser
"Interestingly, the amount of USP11-binding p21 was significantly increased in HCT116 WT cells after treatment with genotoxic agents and vice versa ( xref and), indicating that DNA damage can enhance the interaction between USP11 and p21."

reach
"Therefore, we explored the binding substrate of USP11 in depth.Except for Beclin1 and p53, USP11 can also bind to PPP1CA, p21, NONO, and KLF4, thereby playing a role in cancer, DNA damage, and liver disease by mediating their deubiquitination and stabilization."
USP11 affects TP53
6 1 | 1 1 14 8
USP11 binds TP53.
6 | 6 6
6 | 6 6

sparser
"To better understand the regulation of p53, we tested the interaction between p53 and USP11 using co-immunoprecipitation."

reach
"Furthermore, downregulating RRM1 can modulate the ubiquitination level of p53 by affecting the interaction between p53 and USP11, thereby enhancing the radiation sensitivity of tumor cells by impeding DSB repair [19]."

sparser
"Mechanistically, knockdown of RRM1 stimulates the binding of the ubiquitinating enzyme MDM2 and p53 while inhibiting the binding of the deubiquitinating enzyme USP11 to p53, thereby increasing the ubiquitination of p53."

sparser
"Co-immunoprecipitation (coIP) was performed to verify the interaction between USP11 and p53, and the results demonstrated the binding of USP11 to p53 ( xref C)."

reach
"Furthermore, we evaluated the interaction between p53 and USP11 or MDM2 in control and RRM1 knockdown cells, respectively."

reach
"As shown in Fig. 3G, knockdown of RRM1 enhanced the p53/MDM2 interaction and weakened the p53/USP11 interaction after radiation treatment."

reach
"Our data clearly show that a deficiency in RRM1 promotes the interaction between MDM2 and p53 and weak the binding of USP11 and p53, indicating that RRM1 regulates the stability of p53 through ubiquitination and de-ubiquitination system."

sparser
"Our data clearly show that a deficiency in RRM1 promotes the interaction between MDM2 and p53 and weak the binding of USP11 and p53, indicating that RRM1 regulates the stability of p53 through ubiquitination and de-ubiquitination system."

reach
"Co-immunoprecipitation (coIP) was performed to verify the interaction between USP11 and p53, and the results demonstrated the binding of USP11 to p53 (Figure 3C)."

reach
"To better understand the regulation of p53, we tested the interaction between p53 and USP11 using co-immunoprecipitation."
USP11 activates TP53.
| 1 3 2
USP11 activates TP53. 6 / 8
| 1 3 2

reach
"A pro-inflammatory mediator USP11 enhances the stability of p53 and inhibits KLF2 in intracerebral hemorrhage."

reach
"Also, the combination of USP11 knockdown and restoration of p53 or KLF2 knockdown elevated the mNSS value (Figure 5B) and brain water content (Figure 5C) reduced by USP11 knockdown alone in rats with ICH-like symptoms."

sparser
"USP11 stabilizes and activates p53 following DNA damage by targeting ubiquitinated p53."

sparser
"Post DNA damage, USP11 activates p53 and its target genes such as Puma, Bax , and p21 [ xref ]."

reach
"The reduction in USP11 levels significantly attenuates the induction effect of p53 on the DNA damage stress response ( Fig. 4 ) [ 36 ]."

eidos
"Inhibition of USP11 expression reduces p53 levels and IKKalpha expression , as well as increasing the response of the NF-kappaB pathway to TNFalpha ( 197 ) ."
USP11 deubiquitinates TP53.
1 | 1 3
USP11 deubiquitinates TP53. 4 / 5
1 | 1 3

reach
"OTUD1, OTUD5 and USP11 directly deubiquitinating p53 and functional proteins were required for p53 stabilization [XREF_BIBR - XREF_BIBR]."

trips
"USP11 regulates p53 stability by deubiquitinating p53."

reach
"The above results convinced us that USP11 could deubiquitinate and stabilize p53 in microglial cells to repress KLF2 transcription."

reach
"Similarly, it was found that USP11 deubiquitylates p53 in response to genotoxicity induced by etoposide."
USP11 inhibits TP53.
| 2
USP11 inhibits TP53. 2 / 2
| 2

reach
"As expected, USP11 overexpression indeed inhibited the degradation of p53 and hence stabilized p53 expression (Figure 3D)."

reach
"Moreover, down-regulation of USP11 dramatically attenuated p53 induction in response to DNA damage stress."
USP11 affects NONO
3 1 | 1 19 10
USP11 binds NONO.
3 | 6 10
3 | 6 10

reach
"USP11 interacted with NONO and reversed its poly-ubiquitination."

reach
"3.1 USP11 interacts with NONO."

reach
"Furthermore, we investigated the interaction of endogenous USP11 and NONO in melanoma cells SK-Mel-28 and A375 using co-IP."

reach
"Taken together, these results suggest there is a direct interaction between USP11 and NONO in vivo."

reach
"We demonstrated that USP11 interacted with NONO, removed poly-ubiquitin chains conjugated onto NONO."

sparser
"Collectively, these results demonstrate that USP11 is a new deubiquitinase of NONO and that the signalling axis of USP11NONO is significantly involved in melanoma proliferation."

sparser
"USP11 interacted with NONO and reversed its poly‐ubiquitination."

sparser
"USP11 interacts with NONO."

sparser
"Previous studies have demonstrated that there is the possibility that USP11 and NONO may interact with each other. xref In order to ascertain the hypothesis, we transfected Flag‐USP11 and Myc‐NONO into HEK293 cells, collected total proteins and used the antibodies against Flag/Myc and the isotype‐matched control IgGs to perform coimmunoprecipitation (co‐IP)."

sparser
"Furthermore, we investigated the interaction of endogenous USP11 and NONO in melanoma cells SK‐Mel‐28 and A375 using co‐IP."
USP11 increases the amount of NONO.
| 6
USP11 increases the amount of NONO. 6 / 6
| 6

reach
"As a result, the knockdown of USP11 decreases NONO levels."

reach
"Whereas, overexpression of USP11 increases NONO levels in a dose dependent manner."

reach
"As a result, USP11 positively regulated NONO levels by protecting it from ubiquitin dependent degradation."

reach
"As a result, exogenous USP11 increased NONO levels by preventing its ubiquitination."

reach
"By contrast, knockdown of USP11 decreased NONO levels, which was accompanied by increased ubiquitination."

reach
"For example, Feng et al. discovered that USP11 promotes melanoma progression by stabilizing the protein level of NONO through deubiquitination (Feng et al., 2021)."
USP11 deubiquitinates NONO.
1 | 5
USP11 deubiquitinates NONO. 5 / 6
1 | 5

reach
"3.4 USP11 deubiquitinates NONO."

reach
"Overexpression of WT-USP11, but not mutant USP11, reduced NONO ubiquitination."

reach
"Conversely, USP11 silencing with two independent shRNAs increased endogenous NONO poly-ubiquitination in A375 and SK-Mel28."

reach
"30 Here, we further revealed that NONO ubiquitination could be reversed by USP11 to avoid its degradation through the ubiquitin-proteasome pathway."

reach
"USP11 may stimulate tumorigenesis by deubiquitinating cIAP2, NONO, NF90, E2F1, or cytoplasmic p21; however, it may also inhibit tumorigenesis through stabilizing PML, Mgl-1, PTEN, ARID1A, or nuclear p21 (29, 30)."
USP11 activates NONO.
| 1 2
USP11 activates NONO. 3 / 3
| 1 2

reach
"Neither USP11 overexpression nor depletion in SK-Mel-28 and A375 cells had significant influence on NONO mRNA levels, indicating that USP11 positively regulates NONO at the protein levels, but not at the transcriptional levels."

eidos
"As a result , the knockdown of USP11 decreases NONO levels ."

reach
"As anticipated, overexpression of USP11 could up-regulate NONO in the absence of MG132, whereas MG132 pretreatment effectively eliminated USP11 mediated change of NONO levels."
USP11 affects Flag
| 1 33
USP11 binds Flag.
| 33
| 33

sparser
"Western blotting analysis revealed that, relative to control (Flag), overexpression of Flag-USP11, but not Flag-USP11-C318 A, significantly enhanced the expression of E-cadherin in tumor cells ( xref H and xref F )."

sparser
"Moreover, transfection of FlagUSP11 could pull the endogenous HIF‐1α down in HCC cells (Figure  xref )."

sparser
"Notably, over-expression of either Flag-USP11 or Flag-USP11-C318 A did not induce significant changes in Cdh1 mRNA expression ( xref G )."

sparser
"We co-transfected Myc–PPP1CA and HA–ubiquitin plasmids into 293T cells transfected with either FlagUSP11 plasmid or EV."

sparser
"Subsequently, we overexpressed Flag-USP11, His-Nrf2, and corresponding control vectors in HEK293T cells to detect their exogenous binding (Fig. xref )."

sparser
"The Flag-USP11 plasmid encodes an N-terminally Flag-tagged USP11 protein."

sparser
"Exogenous reciprocal Co-IP assays were further performed by co-transfecting FlagUSP11 and Myc–PPP1CA into 293T cells."

sparser
"To investigate the binding region, full length or truncated segments of Flag-USP11 and Myc-Sirt3 containing different domains were used ( xref I–K)."

sparser
"Furthermore, 293T cells were transfected with Flag-USP11, Myc-GREM1 and HA-Ub with or without DMB."

sparser
"To this end, in the presence or absence of Flag-USP11, cells were treated with cycloheximide (CHX) to inhibit protein biosynthesis, and protein extracts obtained at indicated time points were analyzed."
USP11 activates Flag.
| 1
USP11 activates Flag. 1 / 1
| 1

reach
"Notably, the adhesion ability of E-cadherin-overexpressing sh-Usp11 cells was significantly higher than that of Flag-overexpressing sh-Usp11 but significantly less than that of E-cadherin-overexpressing sh-control cells (Fig. S2, H and I)."
USP11 affects NFKBIA
1 | 1 14 10
USP11 binds NFKBIA.
| 4 9
| 4 9

sparser
"In conclusion, our data provide evidence of the physical and functional interaction between IκBα and USP11."

sparser
"To determine whether the binding of USP11 with IκBα is required for its deubiquitinase activity toward IκBα, we co-transfected Flag-IκBα with Myc-USP11 full-length, Myc-USP11-NT or Myc-USP-CT into HEK 293T cells."

reach
"The association between USP11 and IkappaBalpha were also confirmed by co-immunoprecipitation of endogenous IkappaBalpha and USP11 in HeLa cells (XREF_FIG)."

reach
"To determine whether the binding of USP11 with IkappaBalpha is required for its deubiquitinase activity toward IkappaBalpha, we co-transfected Flag-IkappaBalpha with Myc-USP11 full-length, Myc-USP11-NT or Myc-USP-CT into HEK 293T cells."

reach
"These results suggest that binding of USP11 with IkappaBalpha is required for USP11 mediated IkappaBalpha deubiquitination."

reach
"In conclusion, our data provide evidence of the physical and functional interaction between IkappaBalpha and USP11."

sparser
"We present evidence that USP11 is constitutively associated with IκBα and attenuates IκBα degradation to negatively regulate TNFα-induced NF-κB activation."

sparser
"These results suggest that binding of USP11 with IκBα is required for USP11-mediated IκBα deubiquitination."

sparser
"However, in our co-transfection assay, we found that USP11 but not USP15 is associated with IκBα."

sparser
"In addition, we found that only USP domain failed to mediate the association of USP11 with IκBα and deubiquitination of IκBα."
USP11 inhibits NFKBIA.
| 1
USP11 inhibits NFKBIA. 1 / 7
| 1

eidos
"For example , USP11 negatively regulates TNFalpha-induced NF-kappaB activation associated with IkappaBalpha and attenuates IkappaBalpha degradation [ 34 ] ; USP20 deubiquitinates TRAF6 and suppresses interleukin 1beta ( IL-1beta ) - and Tax-induced NF-kappaB activation [ 40 ] ; Katrin et al. showed that USP15 regulates IkappaBalpha / NF-kappaB by deubiquitinylation IkappaBalpha [ 44 ] ; and USP31 inhibits TNFalpha , CD40 , TRAF2 , TRAF6 and IKKbeta-mediated NF-kappaB activation [ 45 ] ."
USP11 deubiquitinates NFKBIA.
1 | 6
USP11 deubiquitinates NFKBIA. 6 / 7
1 | 6

reach
"However, we found that overexpression of USP11 C318A mutant only partially rescued the inhibitory effect of USP11-WT on TNFalpha induced IkappaBalpha ubiquitination (XREF_SUPPLEMENTARY) as well as TNFalpha- and IKKbeta induced NF-kappaB activation (XREF_SUPPLEMENTARY)."

reach
"Once it is ubiquitinated, IkappaBalpha can be deubiquitinated by its associated USP11 in collaboration with USP15 to prevent excessive NF-kappaB activation induced by TNFalpha."

reach
"In this assay, we found that USP11-WT but not -C318A mutant abrogated ubiquitination of Flag-IkappaBalpha (XREF_FIG)."

reach
"In this assay, we found that only USP11 full-length wild type abrogated ubiquitination of Flag-IkappaBalpha (XREF_FIG)."

reach
"These results demonstrate that USP11 deubiquitinates IkappaBalpha."

reach
"Subsequently we analyzed the effect of USP11 knockdown on the TNFalpha induced IkappaBalpha ubiquitination and NF-kappaB activation."
USP11 ubiquitinates NFKBIA.
| 2 1
USP11 leads to the ubiquitination of NFKBIA. 3 / 3
| 2 1

reach
"However, Sun et al. found no interaction between USP15 and IkappaBalpha, and proposed that USP11 inhibits the ubiquitination and degradation of IkappaBalpha in the early stage, whereas USP15 functions at a later time point in the TNFalpha induced NF-kappaB activation XREF_BIBR."

reach
"In contrary, another study found no interaction between USP15 and IkappaBalpha, and it was proposed that USP11 inhibits the ubiquitination and degradation of IkappaBalpha in the early stage while USP15 functions at a later time point in the TNFalpha induced NF-kappaB activation XREF_BIBR."

sparser
"In this assay, we found that only USP11 full-length wild type abrogated ubiquitination of Flag-IκBα ( xref )."
USP11 activates NFKBIA.
| 2
USP11 activates NFKBIA. 2 / 2
| 2

reach
"Interestingly, knockdown of both USP15 and USP11 expression leads to an increased basal protein level of IkappaBalpha, suggesting that USP11 and USP15 cooperatively modulate IkappaBalpha turnover."

reach
"USP11 is able to modulate TNF-alpha-induced NF-kappaB activation through regulation of nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor alpha (IkappaBalpha) stability."
Flag affects USP11
| 33
| 33

sparser
"Western blotting analysis revealed that, relative to control (Flag), overexpression of Flag-USP11, but not Flag-USP11-C318 A, significantly enhanced the expression of E-cadherin in tumor cells ( xref H and xref F )."

sparser
"Moreover, transfection of FlagUSP11 could pull the endogenous HIF‐1α down in HCC cells (Figure  xref )."

sparser
"Notably, over-expression of either Flag-USP11 or Flag-USP11-C318 A did not induce significant changes in Cdh1 mRNA expression ( xref G )."

sparser
"We co-transfected Myc–PPP1CA and HA–ubiquitin plasmids into 293T cells transfected with either FlagUSP11 plasmid or EV."

sparser
"Subsequently, we overexpressed Flag-USP11, His-Nrf2, and corresponding control vectors in HEK293T cells to detect their exogenous binding (Fig. xref )."

sparser
"The Flag-USP11 plasmid encodes an N-terminally Flag-tagged USP11 protein."

sparser
"Exogenous reciprocal Co-IP assays were further performed by co-transfecting FlagUSP11 and Myc–PPP1CA into 293T cells."

sparser
"To investigate the binding region, full length or truncated segments of Flag-USP11 and Myc-Sirt3 containing different domains were used ( xref I–K)."

sparser
"Furthermore, 293T cells were transfected with Flag-USP11, Myc-GREM1 and HA-Ub with or without DMB."

sparser
"To this end, in the presence or absence of Flag-USP11, cells were treated with cycloheximide (CHX) to inhibit protein biosynthesis, and protein extracts obtained at indicated time points were analyzed."
USP11 affects SFTPC
| 25 7
USP11 binds SFTPC.
| 5 7
| 5 7

sparser
"This finding was supported by a Duolink PLA analysis that visualized in situ interactions between endogenous USP11 and SFTPC or SFTPC I73T . Significantly more PLA dots were observed for USP11 and SFTPC I73T than for USP11 and wild-type SFTPC (Figure xref F)."

reach
"In situ interactions between USP11 and SFTPC were confirmed by PLA dots showing where USP11 and SFTPC were immunostained together in the presence of their specific antibodies (Figure 2J; right panel)."

sparser
"In situ interactions between USP11 and SFTPC were confirmed by PLA dots showing where USP11 and SFTPC were immunostained together in the presence of their specific antibodies (Figure xref J; right panel)."

sparser
"The interaction between USP11 and SFTPC and its ubiquitination status was validated by immunoprecipitation and the TUBEs assay."

sparser
"Next, to explain the mechanism by which USP11 regulates the SFTPC protein level, we examined whether USP11 physically associates with SFTPC in vivo by using a co-immunoprecipitation (co-IP) assay with specific antibodies against endogenous USP11 and SFTPC."

reach
"This finding was supported by a Duolink PLA analysis that visualized in situ interactions between endogenous USP11 and SFTPC or SFTPC ."

sparser
"However, no PLA dots were observed in cells stained with either USP11 or SFTPC antibody alone (Figure xref J; left and middle panel), suggesting that USP11 interacts with the SFTPC protein endogenously."

reach
"The interaction between USP11 and SFTPC and its ubiquitination status was validated by immunoprecipitation and the TUBEs assay."

reach
"Next, to explain the mechanism by which USP11 regulates the SFTPC protein level, we examined whether USP11 physically associates with SFTPC in vivo by using a co-immunoprecipitation (co-IP) assay with specific antibodies against endogenous USP11 and SFTPC."

reach
"Furthermore, we used Duolink PLA analysis, wherein the fluorescent signals (PLA dots) represent interactions between the target and substrate, to visualize in situ interactions between endogenous USP11 and SFTPC 29."
USP11 activates SFTPC.
| 8
USP11 activates SFTPC. 5 / 5
| 5

reach
"Our results show that USP11 depletion significantly decreased both endogenous and ectopic SFTPC protein (Figure 1C and 1D)."

reach
"Therefore, we investigated the function of the USP11-mediated SFTPC protein abundance during lung fibrosis."

reach
"The deubiquitinating activity of USP11 prevents SFTPC protein degradation."

reach
"The depletion of USP11 reduced SFTPC, while depletion of USP19 showed the opposite result by increasing SFTPC protein levels."

reach
"Moreover, USP11 overexpression further prolonged the half-life of the SFTPC protein (Figure 4I; lanes 5-8), whereas the USP11 catalytic mutant did not affect the half-life of the SFTPC protein (Figure 4I; lanes 9-12)."
USP11 activates mutated SFTPC. 3 / 3
| 3

reach
"Next, we wanted to examine the regulatory role of the USP11-mediated stabilization of the SFTPC mutant and its impact on the development of PF."

reach
"This study demonstrated that the depletion of USP11 markedly decreases the half-life of the mutant SFTPC protein by promoting its protein degradation.The ability of polarized epithelial cells to undergo molecular changes that give them the ability to produce extracellular matrix, including collagen and fibronectin, via the EMT, has been implicated in fibrosis and is associated with increased invasion and migration ability 51."

reach
"These data suggest that USP11 enhances the pathogenic effects of the SFTPC mutation by promoting cellular EMT processes that contribute to fibrosis progression."
USP11 increases the amount of SFTPC.
| 4
USP11 increases the amount of SFTPC. 4 / 4
| 4

reach
"USP11 increases SFTPC protein levels."

reach
"These results indicate that USP11 positively regulates SFTPC protein levels."

reach
"Using BLM treatment, we demonstrated that USP11 enhances SFTPC -induced fibrosis and EMT processes by increasing the migration and invasion ability of BEAS-2B cells, suggesting that USP11 enhances the pathogenicity of the SFTPC mutation.Heterozygous expression of the mutant SFTPC allele was reported in several cohorts of IPF and childhood interstitial lung disease patients 35, 53-55."

reach
"Our screening results indicated that the loss of USP11 decreased SFTPC protein levels when compared with the mock control, while the loss of USP19 increased SFTPC expression (Figure 1B)."
USP11 deubiquitinates SFTPC.
| 4
USP11 leads to the deubiquitination of SFTPC. 2 / 2
| 2

reach
"We verified the deubiquitination activity of USP11 using an IP assay, which showed that USP11 overexpression decreased SFTPC polyubiquitination (Figure 3C; lane 2 vs. lane 1)."

reach
"In contrast, USP11 depletion increased the polyubiquitination of SFTPC (Figure 3C; lane 4 vs. lane 1)."
USP11 leads to the deubiquitination of mutated SFTPC. 2 / 2
| 2

reach
"On the contrary, USP11 depletion increased the polyubiquitination of the mutant SFTPC protein (Figure 4G; lane 7 and Figure 4H; lane 8)."

reach
"Here, we demonstrated that USP11 deubiquitinates and accumulates substantial quantities of mutant SFTPC protein in cells by extending its half-life (Figure 4)."
USP11 inhibits SFTPC.
| 2
USP11 inhibits SFTPC. 2 / 2
| 2

reach
"Overall, those results demonstrate that USP11 prevents the ubiquitin-mediated proteasomal degradation of the SFTPC protein via its deubiquitinating activity."

reach
"However, transient expression of USP11 significantly reduced the polyubiquitination smear conjugated with the SFTPC protein (Figure 3B; lane 3)."
USP11 decreases the amount of SFTPC.
| 2
USP11 decreases the amount of SFTPC. 2 / 2
| 2

reach
"Our screening results indicated that the loss of USP11 decreased SFTPC protein levels when compared with the mock control, while the loss of USP19 increased SFTPC expression (Figure 1B)."

reach
"Conversely, treating USP11-depleted cells with MG132 recovered SFTPC expression (Figure S6; lane 3), suggesting that SFTPC protein accumulation is regulated by the ubiquitin-proteasomal system.Next, we used TUBEs and IP assays to investigate the effect of USP11 on the ubiquitination status of the SFTPC protein."
USP11 affects SPRTN
4 1 | 18 7
USP11 binds SPRTN.
4 | 2 7
4 | 2 7

sparser
"To gain insight into the functional relevance of SPRTN-USP11 interaction, we first examined whether USP11 functions in response to DNA damage caused by DPC-inducing agents."

sparser
"We next confirmed SPRTN-USP11 interaction by immunoprecipitation in HEK 293T cells expressing either SFB-USP7, SAMHD1, or SPRTN."

sparser
"We observed a slight increase in SPRTN-USP11 interaction following treatment with etoposide (VP16), a TOP2 crosslinking agent ( xref D , xref ), camptothecin (CPT), TOP1 cross-linking agent, formaldehyde (nonspecific cross-linking agent), and hydroxyurea (non-cross-linking agent) ( xref )."

sparser
"Co-immunoprecipitation (Co-IP) of Myc-USP11 with SFB-SPRTN full-length (FL) or ΔSprT, ΔSH, ΔPIP, ΔUBZ, E112A catalytic inactive, and Y117C (SPRTN mutation identified in RJALS patients) mutant constructs showed that SPRTN-USP11 interaction was lost with deletion of the N-terminal SprT domain of SPRTN ( xref A )."

reach
"VCPIP1 and USP11 interact weakly with SPRTN in co-immunoprecipitating experiments, but show no (VCPIP1) or only weak (USP11) preference for SPRTN-Ub (XREF_SUPPLEMENTARY)."

sparser
"Moreover, we observe SPRTN interaction with USP11 in the absence and upon DNA damage."

sparser
"Based on our observation that SPRTN and USP11 interact ( xref and xref ) and because USP11 is a deubiquitinase ( xref , xref , xref ), we investigated whether SPRTN is a substrate for USP11 deubiquitinase."

reach
"USP11 interacts with SPRTN and cleaves monoubiquitinated SPRTN in cells and invitro."

sparser
"USP11 interacts with SPRTN and cleaves monoubiquitinated SPRTN in cells and in vitro ."
USP11 deubiquitinates SPRTN.
1 | 11
USP11 deubiquitinates SPRTN. 9 / 10
1 | 9

reach
"USP11 mediates repair of DNA protein cross-links by deubiquitinating SPRTN metalloprotease."

reach
"Neither VCPIP1 nor USP11 induce SPRTN deubiquitylation when overexpressed, while USP7 does (XREF_SUPPLEMENTARY)."

reach
"USP11 deubiquitinates SPRTN in cells and invitro."

reach
"To show that deubiquitination of SPRTN by USP11 is direct, we purified SFB-SPRTN, Myc-USP11, and Myc-USP11 C318S proteins from HEK 293T cells and performed an invitro DUB reaction by incubating SFB-SPRTN alone or with Myc-USP11 or Myc-USP11 C318S purified proteins."

reach
"USP11 deubiquitinates SPRTN upon DPC induction."

reach
"We observed that USP11, but not USP11 C318S catalytic mutant, deubiquitinated SPRTN (XREF_FIG E, anti-Ub blot) and reduced SPRTN auto-cleavage products (XREF_FIG E, IP blot)."

reach
"USP11 deubiquitinates SPRTN for the repair of DNA–protein crosslinks and γH2AX for the double-strand-break repair (55, 56)."

reach
"However, we observe that lack of SPRTN deubiquitination by USP11 and VCPIP1 did not affect recruitment on chromatin."

reach
"Upon formaldehyde treatment and other yet to be identified signals, SPRTN is deubiquitinated by USP11 (this study), USP7, and VCPIP1."
USP11 deubiquitinates ubiquitinated SPRTN. 2 / 2
| 2

reach
"The monoubiquitinated SPRTN is deubiquitinated by USP11, and the unmodified SPRTN only is localized to chromatin upon DNA damage by DPC-inducing agents (7, 57)."

reach
"We observed that monoubiquitinated SPRTN is deubiquitinated by USP11 FL, but not C318S deubiquitinase inactive mutant (XREF_FIG C and Fig.S2A)."
USP11 ubiquitinates SPRTN.
| 3
USP11 leads to the ubiquitination of SPRTN. 3 / 3
| 3

reach
"These observations show that depletion of USP11 and VCPIP1 inhibits SPRTN deubiquitination, but in contrast to previous reports, monoubiquitination does not restrict SPRTN access to chromatin."

reach
"USP11 depletion impairs SPRTN deubiquitination and promotes SPRTN auto-proteolysis in response to formaldehyde induced DPCs."

reach
"Similarly, USP11 depletion in HCT116 inhibited SFB-SPRTN deubiquitination (XREF_FIG B, lane 4) compared with negative control (XREF_FIG B, lane 2) upon formaldehyde treatment, suggesting that USP11 depletion inhibits SPRTN deubiquitination upon DPC induction."
USP11 activates SPRTN.
| 2
USP11 activates SPRTN. 2 / 2
| 2

reach
"Depletion of USP11 increased SPRTN auto-proteolysis and sensitized cells to DPC inducing agents leading to increased accumulation of DPCs."

reach
"We observed that USP11 depletion also promotes SPRTN auto-cleavage, and auto-proteolysis of SPRTN is exacerbated in the combined absence of USP11 and USP7."
MYC affects USP11
3 | 6 21
3 | 6 21

reach
"DLGAP5 was found to facilitate the interaction between USP11 and MYC, promoting MYC-driven transcription of DLGAP5 itself, thereby creating a positive feedback loop."

reach
"Among these, USP11 scored the highest and is known to interact with MYC, although further studies are limited 49.Focusing on the interaction between USP11 and MYC, we conducted co-IP experiments and confirmed that USP11 interacts with MYC (Figure S10A-B)."

reach
"Endogenous co-IP revealed that MYC binds with both DLGAP5 and USP11 in BLCA cells (Figure 5B and Figure S10C)."

reach
"Conversely, the interaction between USP11 and MYC significantly decreased with DLGAP5 knockdown, whereas DLGAP5 overexpression enhanced this interaction (Figure 6B and Figure S14E)."

reach
"After GEM treatment, increased MYC levels enhance DLGAP5 transcription, which in turn promotes the binding of USP11 to MYC, stabilizing MYC and resisting the cytotoxic effects of GEM."

sparser
"To validate the interaction between USP11 and MLF2, HEK293T cells co-transfected with FLAG-MLF2 and MYC-USP11 were used for immunoprecipitation; the results showed that MLF2 intensively interacted wit[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"To determine whether USP11 regulates the levels of MLF2 by impeding its ubiquitination, we transfected HEK293T cells with FLAG-MLF2, HA-Ub, MYC-USP11, and MYC-USP11-C318A and performed the immunopreci[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

reach
"~73% (8,305 of 11,316) of c-Myc peaks overlapped with HA-USP11-WT peaks (Fig. 5N), suggesting the interaction between USP11 and c-Myc on select c-Myc target genes."

sparser
"As shown in Figure 4A , PB2, PA, and NP specifically co-precipitated with Myc-USP11 (lanes 3, 9, and 12, respectively)."

sparser
"Co-immunoprecipitation (Co-IP) of Myc-USP11 with SFB-SPRTN full-length (FL) or ΔSprT, ΔSH, ΔPIP, ΔUBZ, E112A catalytic inactive, and Y117C (SPRTN mutation identified in RJALS patients) mutant constructs showed that SPRTN-USP11 interaction was lost with deletion of the N-terminal SprT domain of SPRTN ( xref A )."
USP11 affects TGFB
| 3 23
USP11 activates TGFB.
| 3 21
USP11 activates TGFB. 10 / 27
| 3 21

reach
"This result indicates a central role for the proteasome in USP11 modulation of TGFbeta pathway signalling."

reach
"Despite its interaction with SMAD7, we found that USP11 enhanced TGFbeta signalling and bound the TGFbeta R1 receptor (ALK5)."

reach
"USP11 also regulates TGF-β-induced epithelial-mesenchymal plasticity and promotes human breast cancer metastasis by stabilizing TGF-βRII (78)."

reach
"Roman Istomine et al. [114] found that USP11 potentiates TGF-β signaling in CD4 T cells to facilitate Foxp3 regulatory T and Th17 cell differentiation."

reach
"The DUBs USP4, USP11, USP15, and UCH37 have previously been demonstrated to modulate TGF-beta pathway activity by directly deubiquitinating the TbetaRI, resulting in increased TbetaRI stability (XREF_FIG) XREF_BIBR XREF_BIBR XREF_BIBR XREF_BIBR."

reach
"USP11 enhances TGFbeta signalling and can override the negative effects of SMAD7."

reach
"Ubiquitin-specific peptidase 11 (USP11) has been reported to promote transforming growth factor β (TGFβ) signaling which plays essential role underlying RIPF."

reach
"The deubiquitylase activity of USP11 is required to enhance TGFbeta induced gene transcription."

reach
"USP11 knockdown inhibits TGFbeta pathway signalling."

reach
"USP11 overexpression in T EFF cells enhanced the activation of the TGF-beta pathway and promoted T REG or T H 17, but not Th1, cell differentiation in vitro and in vivo, an effect abrogated by USP11 gene silencing or the inhibition of enzymatic activity."
USP11 deubiquitinates TGFB.
| 2
USP11 deubiquitinates TGFB. 2 / 2
| 2

reach
"USP11 interacts with and deubiquitylates the type I TGFbeta receptor (ALK5), resulting in enhanced TGFbeta induced gene transcription."

reach
"For example, the closely related DUBs USP4, USP11 and USP15 have been reported to modulate TGFbeta signalling by deubiquitylating the type I TGFbeta receptor ALK5 [XREF_BIBR - XREF_BIBR]."
USP11 affects autophagy
| 4 23
USP11 activates autophagy.
| 4 14
| 4 14

eidos
"USP11 promotes 5-Fu resistance through inducing autophagy dependent on VCP The above experimental results have confirmed that USP11 could not only mediate the resistance to 5-Fu , but also induce autophagy in colorectal cancer cells ."

reach
"Thus, we hypothesized that USP11 could promote resistance to 5-Fu in colorectal cancer by inducing autophagy."

reach
"The above experimental results have confirmed that USP11 could not only mediate the resistance to 5-Fu, but also induce autophagy in colorectal cancer cells."

eidos
"A series of in vitro and in vivo experiments revealed that USP11 promoted autophagy through AMPK / Akt / mTOR pathway via stabilizing valosin-containing protein ( VCP ) ."

reach
"Furthermore, the deubiquitinating enzyme USP11 promotes autophagy-dependent ferroptosis by stabilizing BECN1, leading to ferroptosis-mediated spinal cord ischemia-reperfusion injury [163]."

reach
"Ubiquitin-specific protease 11 (USP11) was found to induce resistance to 5-FU by inducing autophagy through AMPK/AKT/mTOR pathway in CRC cell lines (188)."

reach
"USP11 can induce resistance to 5-FU in CRC by activating autophagy via stabilizing VCP[67]."

reach
"This study investigates the role of ubiquitin-specific protease 11 (USP11) in modulating Forkhead box protein O1 (FOXO1) to promote autophagy and alleviate oxidative stress in lung epithelial cells, which could provide novel insights into ALI therapeutic strategies."

eidos
"Collectively , these findings suggest that USP11 could promote autophagy via AMPK / Akt / mTOR signaling pathway dependent on VCP ."

reach
"E2F1/USP11 modulates autophagy by regulating the ERK/mTOR pathway, leading to HCC cell proliferation and metastasis."
USP11 inhibits autophagy.
| 9
| 9

reach
"16 Although USP11 plays a critical role in HCC progression, and our earlier research established that USP11 inhibits autophagy through targeting ERK/mTOR pathway to promote HCC metastasis, 16 the mechanisms of USP11 in HCC glycolysis remain poorly understood.Various biological processes, including hypoxia, are related to protein homeostasis, which maintained by post‐translational modification."

reach
"The E2F1 and USP11 positive feedback loop promotes hepatocellular carcinoma metastasis and inhibits autophagy by activating ERK and mTOR pathway."

reach
"Moreover, a recent study has also reported that depletion of USP11 homolog H34C03.2 in Caenorhabditis elegans triggers autophagy hyperactivation and alleviates human Aβ aggregation-induced paralysis (Basic et al, 2021)."

reach
"Therefore, further studies are warranted in this regard.Multiple studies suggest that mTOR may be a central regulator of autophagy.100 101 Moreover, some studies have shown that USP11 can inhibit cell autophagy through the ERK/mTOR pathway, which promotes the proliferation and metastasis of cancer cells."

reach
"Moreover, E2F1 and USP11 inhibited autophagy by regulating ERK and mTOR pathway."

reach
"103 However, whether USP11 can inhibit autophagy through the ERK/mTOR pathway and play a key role in BC development needs further exploration."

reach
"Here, we show that the deubiquitinase USP11 restricts autophagy and that knockout (KO) of USP11 in mammalian cells results in elevated autophagic flux."

reach
"Taken together, these results indicate that the E2F1 and USP11 signal axis promotes HCC proliferation and metastasis and inhibits autophagy, which provides an experimental basis for the treatment of HCC."

reach
"We also demonstrate that depletion of the USP11 homolog H34C03.2 in Caenorhabditis elegans triggers hyperactivation of autophagy and protects the animals against human β-amyloid peptide 42 aggregation-induced paralysis."
USP11 affects MAPT
| 1 25 1
USP11 activates MAPT.
| 1 14
USP11 activates MAPT. 10 / 15
| 1 14

eidos
"To begin , we replicated our investigation of HeLa-V5-tau cells and observed that USP11 knockdown reduces tau by ~ 45 % ( Figures 1A and 1B ) ."

reach
"Recent studies have demonstrated that deubiquitinases, such as X-linked ubiquitin-specific peptidase 10 (USP10), USP11, and USP13, increase the aggregation of tau, enhance vulnerability to tauopathy, and delay tau degradation by deubiquitinating tau (Liu et al., 2019; Wei et al., 2022; Yan et al., 2022)."

reach
"It is notable that hemizygous loss of usp11 improves spatial memory and LTP deficits and reduces insoluble tau to a similar extent as complete loss of usp11 in female PS19 mice."

reach
"Notably, women are more susceptible to AD compared to men due to the enzyme ubiquitin-specific peptidase 11, encoded in an X chromosome gene, which prevents tau degradation and promotes its abnormal aggregation [6]."

reach
"X-linked ubiquitin specific peptidase 11 (USP11) augments pathological tau aggregation via tau deubiquitination initiated at lysine-28 (Y. Yan et al., 2022 )."

reach
"In addition, the X chromosome gene expression of ubiquitin-specific peptidase 11 could cause more tau protein accumulation in the brain of women, leading to a higher risk of dementia in women than men [20]."

reach
"Among 7-month-old female mice, loss of usp11 in tau ;usp11 mice modestly but significantly reduced soluble tau compared to tau mice (Figures 5A and 5B; Figures S5G and S5H), while the reduction in soluble pS199/202-tau was not significant (Figures 5A and 5C)."

reach
"Furthermore, USP11 contributes to an increased risk of Alzheimer’s disease in females by stabilizing tau protein, and inhibiting USP11 has been shown to slow disease progression [25, 26]."

reach
"Here, we demonstrate through in vitro and in vivo models, as well as human AD brain tissue, that X-linked ubiquitin specific peptidase 11 (USP11) augments pathological tau aggregation via tau deubiquitination initiated at lysine-281."

reach
"In addition, an X factor, USP11, promotes tau modification and pathology in female mice (143)."
USP11 deubiquitinates MAPT.
| 6
USP11 deubiquitinates MAPT. 6 / 6
| 6

reach
"USP11 deubiquitinates tau in cells and in vitro."

reach
"USP11 deubiquitinates and insolubilizes WT tau, but not K281Q tau acetylation mimic."

reach
"USP11 overexpression significantly reduced ubiquitination of WT tau, which was also observed in K274Q and K280Q mutants, while USP11 had no effect on ubiquitination of the K281Q mutant (Figures 3D and 3F)."

reach
"The ubiquitin-specific peptidase 11 (USP11) deubiquitinates tau, augmenting its aggregation [306]."

reach
"Tau ubiquitination was diminished by the addition of recombinant USP11 but partially restored by IsoLiPro, suggesting IsoLiPro promotes tau ubiquitination and degradation by inhibiting USP11 (Fig. 3D)."

reach
"Enhanced proteasome activity protects APP-overexpressing mouse and fly models from AD-like pathology , and conversely, elevated USP11-driven deubiquitination of tau increases pathological tau aggregation ; both imply that ubiquitination can mitigate AD pathology."
USP11 binds MAPT.
| 3 1
| 3 1

reach
"As shown in Fig. 1A,B, the levels of both USP11 and total tau proteins were significantly downregulated after IsoLiPro treatment in HEK293-hTau cells overexpressing tau441.To further confirm the interactions between USP11 and tau and the involvement of USP11 in IsoLiPro-induced tau reduction, HEK293-hTau cells overexpressing USP11 (HEK293-hTau/USP11) was conducted."

reach
"As expected, significantly reduced interactions between cellular tau and USP11 can be observed after IsoLiPro treatment (Fig. 1E)."

reach
"In addition, the impaired interaction between USP11 and tau was further confirmed in vitro by IF staining, as evidenced by the weakened co-localizations of these two proteins (Fig. EV2A)."

sparser
"We also detected native USP11-tau complexes by proximity ligation assay (PLA) in Hela-V5-tau cells ( xref ; xref , negative controls)."
USP11 acetylates MAPT.
| 2
USP11 leads to the acetylation of MAPT. 2 / 2
| 2

reach
"However, USP11 siRNA significantly prevented tau acetylation by CBP/p300 (Figures 3G–3I; Figure S3A)."

reach
"In line with their hypothesis, USP11 did not decrease solubility or increase aggregation of acetylation mimics, implying that tau acetylation inhibits clearance of aggregated tau."
USP11 affects XIAP
4 1 | 10 9
USP11 binds XIAP.
4 | 5 9
4 | 5 9

sparser
"Additionally, USP11 interacts with XIAP to suppress apoptosis in breast cancer cells [ xref ]."

reach
"The above analysis helped us narrow down the interfacial residues of the XIAP and USP11 complex to 503-963 (on USP11) and 200-210 (on XIAP)."

reach
"As shown in XREF_FIG D-F, replacing Leu207 with proline, but not mutation of Cys203 or Lys206 to alanine, significantly destabilizes XIAP, presumably, due to the perturbation of the interfacial interaction between USP11 and XIAP and reduced deubiquitylation capacity of USP11."

reach
"These results further suggested that Leu207 was the critical residue on XIAP in mediating the binding between USP11 and XIAP."

reach
"In addition, expression of wild-type XIAP leads to the inhibition of anoikis, we observed that disruption of interaction between XIAP and USP11 by expression of XIAP L207P mutant (interaction deficient) significantly attenuates the inhibition of anoikis by XIAP (Supplemental Fig. 6)."

reach
"XIAP is directly bound to USP11 as shown here by both experimental and computational examinations."

sparser
"The interaction of XIAP with USP11 was confirmed by blotting complexes having endogenous USP11 precipitated with XIAP specific antibodies ( xref C) or complexes of overexpressed tagged USP11 with antibodies against Myc tag ( xref D) and probing for XIAP."

sparser
"To further characterize and visualize the mechanism of interaction between USP11 and XIAP, we performed molecular docking simulations, using the computational methods described earlier ( xref )."

sparser
"To validate the impact of Cys203 and Leu207 as well as Lys206 on XIAP in mediating the interaction of XIAP with USP11, we performed a multiple sequence alignment at that particular region (residues 200–210), using the aligned the amino acid stretch from 200 to 210 of human XIAP with mouse, rat and xenopus XIAP sequences as well as the human CIAP1 and CIAP2."

sparser
"As shown in xref D–F, replacing Leu207 with proline, but not mutation of Cys203 or Lys206 to alanine, significantly destabilizes XIAP, presumably, due to the perturbation of the interfacial interaction between USP11 and XIAP and reduced deubiquitylation capacity of USP11."
USP11 deubiquitinates XIAP.
1 | 3
USP11 deubiquitinates XIAP. 3 / 4
1 | 3

reach
"Our identification of deubiquitylation of XIAP by USP11 adds up a novel layer for XIAP regulation."

reach
"3.5 Identification of Molecular Motifs on USP11 and XIAP that Mediate Deubiquitylation of XIAP by USP11."

reach
"Zhuan Zhou et al. [93] identified that USP11 facilitates epithelial transformation of mammary epithelial cells and breast carcinogenesis via deubiquitination of XIAP."
USP11 activates XIAP.
| 2
USP11 activates XIAP. 2 / 3
| 2

reach
"We observed that the XIAP expression levels were tightly regulated by USP11, and that elevated expression of USP11 led to significant upregulation of both endogenous and exogenous XIAP, while as the mRNA level of XIAP has no change (XREF_FIG A & B, Supplemental Figs. 1 & 2A)."

reach
"While we have identified the critical role of UPS11 in mammary tumorigenesis and further dissected the mechanism by which USP11 catalyzes XIAP for deubiquitylation, the mechanism that initiates the accumulation of USP11 in breast cancer tissue and its subsequent regulation during the tumor development still remains unknown."
USP11 affects PML
4 1 | 1 17 2
USP11 deubiquitinates PML.
1 | 1 10
USP11 deubiquitinates PML. 9 / 10
1 | 1 8

reach
"USP11 deubiquitinates PML."

reach
"USP11 deubiquitinates and stabilizes PML, thereby counteracting the functions of PML ubiquitin ligases RNF4 and the KLHL20-Cul3 (Cullin 3) and Roc1 complex."

trips
"USP11 deubiquitinates and stabilizes PML, thereby counteracting the functions of PML ubiquitin ligases RNF4 and the KLHL20-Cul3 (Cullin 3)-Roc1 complex."

reach
"Remarkably, USP11 was able to antagonize RNF4- and Roc1-Cul3-KLHL20-mediated PML ubiquitination in 293T cells and GBM cell line U87 (XREF_SUPPLEMENTARY)."

reach
"PML [33], SOX11 [18], VCP [34], and other proteins were also proved to be deubiquitinated by USP11 with uncertain linking type, which further contributed or restrained the progression of different diseases."

reach
"We demonstrated that USP11 deubiquitinates and stabilizes PML."

reach
"Next, we determined whether USP11 could deubiquitinate PML in vitro."

reach
"By contrast, USP11 promotes deubiquitination and stabilization of PML [XREF_BIBR]."

reach
"In brain tumors, USP11 deubiquitinates and stabilizes PML, and its transcription is inhibited by the Notch effector Hey1 ."
Modified USP11 leads to the deubiquitination of PML. 2 / 2
| 2

reach
"Importantly, the NIC induced PML ubiquitination was abrogated by Hey1 depletion or USP11 overexpression (XREF_FIG)."

reach
"In the reciprocal experiment, overexpression of USP11, but not its catalytically inactive mutant, reduced PML ubiquitination (XREF_FIG)."
USP11 binds PML.
4 | 2 2
4 | 2 2

reach
"USP11 interacts with and stabilizes PML."

reach
"Interaction between endogenous USP11 and endogenous PML was also detected by reciprocal coimmunoprecipitations and the specificity of this interaction was confirmed by using lysates derived from PML-null mouse embryonic fibroblasts (MEFs; XREF_FIG)."

sparser
"Furthermore, purified USP11 and PML-I interacted in vitro ( xref )."

sparser
"Interaction between endogenous USP11 and endogenous PML was also detected by reciprocal coimmunoprecipitations and the specificity of this interaction was confirmed by using lysates derived from PML -null mouse embryonic fibroblasts (MEFs; xref )."
USP11 activates PML.
| 3
USP11 activates PML. 3 / 3
| 3

reach
"These data indicate that USP11 upregulates PML by preventing its proteasomal degradation."

reach
"Recent studies have demonstrated the pivotal roles of ubiquitination in PML stability mediated by an E3 ligase UHRF1 or deubiquitinase USP11 in cancers XREF_BIBR, XREF_BIBR."

reach
"USP11 also increased PML half-life (XREF_FIG)."
USP11 inhibits PML.
| 2
USP11 inhibits PML. 2 / 2
| 2

reach
"USP11 mediated PML stabilization blocks GBM malignant traits."

reach
"While USP40 shRNAs did not affect PML expression (XREF_SUPPLEMENTARY), knockdown of USP11 by three independent shRNAs induced downregulation of PML protein but not PML messenger RNA (XREF_FIG)."
USP11 affects LPAR1
1 | 11 4
USP11 binds LPAR1.
| 3 4
| 3 4

reach
"In contrast to the LPA increased in the association between LPA1 and Nedd4L, LPA treatment reduced the interaction between LPA1 and USP11 (XREF_FIG d)."

reach
"To develop small molecules specific for destabilization of LPA1, future studies will focus on drug throughput screening of small molecules to interrupt the interaction between LPA1 and USP11 interaction, thereby leading destabilization of LPA1 and lessening endotoxin induced inflammatory lung injury."

sparser
"To develop small molecules specific for destabilization of LPA1, future studies will focus on drug throughput screening of small molecules to interrupt the interaction between LPA1 and USP11 interaction, thereby leading destabilization of LPA1 and lessening endotoxin-induced inflammatory lung injury."

sparser
"Phosphorylation increases Nedd4L E3 ligase association with lysophosphatidic acid receptor 1 (LPA1), and reduces deubiquitinase USP11 interaction with LPA1 [ xref ]."

sparser
"LPA1 is associated with USP11 in quiescent cells, while LPA treatment triggers LPA1 dis-association with USP11 and in turn binding to Nedd4L. Knockdown or inhibition of USP11 reduces LPA1 stability, levels of LPA1, and LPA1-CD14 interaction complex; thereby diminishing both LPA- and LPS-induced inflammatory responses and lung injury in preclinical murine models."

reach
"Phosphorylation increases Nedd4L E3 ligase association with lysophosphatidic acid receptor 1 (LPA1), and reduces deubiquitinase USP11 interaction with LPA1 [33]."

sparser
"In contrast to the LPA-increased in the association between LPA1 and Nedd4L, LPA treatment reduced the interaction between LPA1 and USP11 ( xref d)."
USP11 activates LPAR1.
| 1
USP11 activates LPAR1. 1 / 8
| 1

reach
"Here we report that a deubiquitinating enzyme, USP11, promotes LPA1 stability by reduction of LPA1 ubiquitination, resulting in enhanced LPA-LPA1 signal pathway."
USP11 deubiquitinates LPAR1.
1 | 6
USP11 deubiquitinates LPAR1. 6 / 7
1 | 6

reach
"USP11 exacerbates pneumonia by deubiquitinating and stabilizing LPA1, a proinflammatory factor, enhancing LPA1-mediated proinflammatory effects (39)."

reach
"The stability of lysophosphatidic acid receptor 1 (LPA1) is up-regulated by ubiquitin-specific protease 11 (USP11), which deubiquitinates LPA1 and enhances LPA1-mediated proinflammatory effects [33,36,37,38,39]."

reach
"The stability of LPA1 is up-regulated by ubiquitin specific protease 11 (USP11), which deubiquitinates LPA1 and enhances LPA1 mediated pro inflammatory effects."

reach
"3.4 Deubiquitination of LPA1 by USP11 Increases its Stability."

reach
"Taken together, USP11 deubiquitinates and stabilizes LPA1, and LPA induced switching LPA1 association with USP11 to Nedd4L plays a critical role in LPA1 ubiquitination and degradation (XREF_FIG e)."

reach
"USP11 reverses LPA1 ubiquitination, thereby stabilizing LPA1 and promoting LPA/LPA1-mediated signaling pathways and inflammatory responses [62]."
USP11 inhibits LPAR1.
| 1
USP11 inhibits LPAR1. 1 / 2
| 1

reach
"3.7 USP11 Inhibitor, Mitoxathrone, Reduces LPA1 Stability and Protects LPS Induced Lung Injury."
SMAD7 affects USP11
3 | 8 10
SMAD7 binds USP11.
3 | 6 10
3 | 6 10

reach
"We performed size-exclusion chromatography on HaCaT cell extracts in order to detect potential endogenous USP11 and SMAD7 complex formation."

reach
"One, we hypothesized that USP11 binds and deubiquitylates SMAD7, thereby inhibiting the TGFbeta pathway."

reach
"Size-exclusion chromatography also alluded to the possibility of potential complex formation between USP11 and SMAD7."

reach
"Conversely, a SMAD7 and USP11 complex would deubiquitylate the receptor, preventing its degradation and allow continued signalling (XREF_FIG)."

sparser
"USP11 but not USP15 binds specifically to SMAD7."

sparser
"To confirm the specificity of the USP11SMAD7 interaction, SMADs carrying an N-terminal FLAG tag were transiently transfected into HEK293 cells with or without the N-terminal HA-tagged USP11."

sparser
"TGFβ stimulation did not alter the SMAD7USP11 interactions (see the electronic supplementary material, figure S1)."

sparser
"USP11SMAD7 interaction and potential complex formation raised two distinct possibilities for USP11 targets within the TGFβ pathway."

sparser
"One, we hypothesized that USP11 binds and deubiquitylates SMAD7, thereby inhibiting the TGFβ pathway."

sparser
"TGF-β signaling is enhanced by the interaction of USP11 with SMAD7 [44] ."
SMAD7 activates USP11.
| 2
SMAD7 activates USP11. 2 / 2
| 2

reach
"We therefore hypothesized that USP11 directed by SMAD7 plays a role in balancing receptor ubiquitylation."

reach
"Two, we hypothesized that SMAD7 could direct USP11 DUB activity to other pathway proteins it interacts with, such as the type I TGFbeta receptors, thereby enhancing pathway signalling."
USP11 affects TGFBR1
1 1 | 17 5
USP11 binds TGFBR1.
1 | 7 5
1 | 7 5

sparser
"USP11 may bind ALK5 and prevent the SMAD7-E3 ligase complex access to ubiquitylate the receptor."

reach
"USP11 interacts with ALK5."

reach
"FLAG-ALK5 interacted with HA-USP11, and this interaction was only slightly enhanced in the presence of over-expressed SMAD7 (XREF_FIG a)."

reach
"However, because USP11 interacts with ALK5 and positively regulates the TGFbeta pathway dependent on its catalytic activity, ALK5 appeared to be a strong candidate for deubiquitylation by USP11."

reach
"USP11 may bind ALK5 and prevent the SMAD7-E3 ligase complex access to ubiquitylate the receptor."

reach
"In the case of USP11, SMAD7 does not appear to act exclusively as a scaffold for as SMAD7 does not appear to mediate the interaction between USP11 and TbetaRI, despite the fact that SMAD7 and USP11 be[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"However, because USP11 interacts with ALK5 and positively regulates the TGFβ pathway dependent on its catalytic activity, ALK5 appeared to be a strong candidate for deubiquitylation by USP11."

reach
"Similarly, USP9x and USP11 interact and deubiquitinate Smad4 and ALK5, respectively, [29, 30] to regulate the transforming growth factor/BMP cell signaling pathways necessary for osteogenic differentiation and bone formation."

sparser
"USP11 interacts with ALK5."

reach
"When bound to ALK5, USP11 deubiquitylates and protects ALK5 from proteasomal degradation resulting in enhanced TGFbeta signalling."
USP11 deubiquitinates TGFBR1.
1 | 10
USP11 deubiquitinates TGFBR1. 10 / 11
1 | 10

reach
"XREF_BIBR, XREF_BIBR, XREF_BIBR, XREF_BIBR In this study, we show that USP11 has no effect on TbetaRI stability in human lung fibroblast cells, though Al-Salihi et al. 21 showed that USP11 de-ubiquitinates TbetaRI."

reach
"For example, the closely related DUBs USP4, USP11 and USP15 have been reported to modulate TGFbeta signalling by deubiquitylating the type I TGFbeta receptor ALK5 [XREF_BIBR - XREF_BIBR]."

reach
"It has been revealed that the DUBs, UCH37, USP11, and USP15, de-ubiquitinate and stabilize TbetaRI."

reach
"Similarly, USP9x and USP11 interact and deubiquitinate Smad4 and ALK5, respectively, [29, 30] to regulate the transforming growth factor/BMP cell signaling pathways necessary for osteogenic differentiation and bone formation."

reach
"USP11 augments TGFbeta signalling by deubiquitylating ALK5."

reach
"Likely, USP11 is also involved in the TGF/BMP signaling pathway by deubiquitylating ALK5 [98]."

reach
"USP11 deubiquitylates ALK5."

reach
"Over-expressed wt USP11 was able to deubiquitylate ALK5."

reach
"USP11 was able to reduce ALK5 polyubiquitylation, although not to basal levels."

reach
"UCHL37, USP11, and USP15 de-ubiquitinate TbetaRI, XREF_BIBR, XREF_BIBR, XREF_BIBR while USP15, CYLD, and USP9X target SMAD4 or SMAD7."
USP11 affects SIRT3
3 | 11 10
USP11 binds SIRT3.
3 | 7 10
3 | 7 10

sparser
"Reverse Co-IP demonstrated that USP11 interacted with M2 domain of Sirt3 ( xref M)."

sparser
"Collectively, the results above proved that USP11 interacts with Sirt3, and the interaction depended on the M2 domain of USP11 and M2 domain of Sirt3."

reach
"Sirt3 has been found to increase oxidative stress and induce ferroptosis to promote IVDD, while USP11 can bind to Sirt3 and stabilize Sirt3 to slow IVDD progression (Zhu et al., 2023a)."

sparser
"In the current study, IP/MS was performed to investigate mechanism through which Sirt3 was regulated in the process of oxidative stress-induced ferroptosis, and we found that Sirt3 protein interacts with USP11 in HNP cells."

sparser
"Further investigations proved the direct interaction of USP11 and Sirt3 as described above."

sparser
"The direct interaction of USP11 and Sirt3 is a crucial molecular event that inhibit oxidative stress-induced ferroptosis, thus improves IVDD and relives pain reaction."

sparser
"It may provide new methods of diagnosis and treatment for promoting NP cells survival and relieving pain after IVDD to understand the molecular mechanism of the oxidative stress-induced ferroptosis and signaling pathways of the interaction of USP11 and Sirt3 ( xref )."

reach
"In conclusion, the current study emphasized the importance of the interaction of USP11 and Sirt3 in the pathological process of IVDD via regulating oxidative stress-induced ferroptosis, and USP11-mediated oxidative stress-induced ferroptosis is identified as a promising target for treating IVDD."

sparser
"USP11 interacts with Sirt3."

reach
"The interaction of USP11 and Sirt3 was further confirmed using Co-IP analysis."
USP11 deubiquitinates SIRT3.
| 4
USP11 deubiquitinates SIRT3. 4 / 4
| 4

reach
"USP11 can directly deubiquitinate and stabilize Sirt3."

reach
"The deubiquitinating enzyme USP11 stabilizes SIRT3 by directly binding to and deubiquitinating SIRT3."

reach
"Subsequently, we sought to determine that USP11 may deubiquitinate Sirt3, thus stabilize the expression of Sirt3."

reach
"The ubiquitination of Sirt3 was increased effectively by knockdown of USP11, while Sirt3 decreased at protein level (Fig. 5G)."
USP11 affects SMAD7
3 | 6 10
3 | 6 10

reach
"We performed size-exclusion chromatography on HaCaT cell extracts in order to detect potential endogenous USP11 and SMAD7 complex formation."

reach
"One, we hypothesized that USP11 binds and deubiquitylates SMAD7, thereby inhibiting the TGFbeta pathway."

reach
"Size-exclusion chromatography also alluded to the possibility of potential complex formation between USP11 and SMAD7."

reach
"Conversely, a SMAD7 and USP11 complex would deubiquitylate the receptor, preventing its degradation and allow continued signalling (XREF_FIG)."

sparser
"USP11 but not USP15 binds specifically to SMAD7."

sparser
"To confirm the specificity of the USP11SMAD7 interaction, SMADs carrying an N-terminal FLAG tag were transiently transfected into HEK293 cells with or without the N-terminal HA-tagged USP11."

sparser
"TGFβ stimulation did not alter the SMAD7USP11 interactions (see the electronic supplementary material, figure S1)."

sparser
"USP11SMAD7 interaction and potential complex formation raised two distinct possibilities for USP11 targets within the TGFβ pathway."

sparser
"One, we hypothesized that USP11 binds and deubiquitylates SMAD7, thereby inhibiting the TGFβ pathway."

sparser
"TGF-β signaling is enhanced by the interaction of USP11 with SMAD7 [44] ."
USP11 affects KLF4
3 | 1 18 1
USP11 binds KLF4.
3 | 3 1
3 | 3 1

reach
"Since USP11 has been previously reported as an oncogene in HCC, but its underlying molecular mechanisms in hepatic disease are not entirely understood, we decided to further explore its activity as KLF4‐binding partner.We started by assessing the interaction between KLF4 and USP11 through co‐immunoprecipitation (co‐IP) analysis in transfected HEK293 cells."

reach
"Therefore, we explored the binding substrate of USP11 in depth.Except for Beclin1 and p53, USP11 can also bind to PPP1CA, p21, NONO, and KLF4, thereby playing a role in cancer, DNA damage, and liver disease by mediating their deubiquitination and stabilization."

reach
"39 , 43 Interestingly, we also found that KLF4/USP11 interaction occurred mainly in the nucleus."

sparser
"USP11 interacts with KLF4 and digests the K63-linked polyubiquitin chain on KLF4 [ xref ]."
USP11 deubiquitinates KLF4.
| 5
USP11 deubiquitinates KLF4. 5 / 5
| 5

reach
"25 , 26 , 27 Recently, USP11 was shown to promote HCC development, 28 but the underlying molecular mechanisms involved in this pathogenic process remain poorly understood.In this study, we used a proteomic approach to identify KLF4‐interacting DUBs and firstly discovered that USP11 was responsible for deubiquitinating KLF4 in HCC cells."

reach
"USP11 deubiquitinates K63‐dependent polyubiquitination of KLF4 and suppresses its stability."

reach
"These results demonstrate that the ID domain of KLF4 and the catalytic domain of USP11 are responsible for KLF4USP11 interaction.Next, we investigated whether USP11 could deubiquitinate KLF4 as a DUB."

reach
"The results suggested that coexpression of USP11 and KLF4 significantly prevented the ubiquitination of KLF4 mediated by WT‐Ub, but not from KO‐Ub (Figure 2A)."

reach
"USP11 deubiquitinated KLF4."
USP11 decreases the amount of KLF4.
| 1 4
USP11 decreases the amount of KLF4. 5 / 5
| 1 4

reach
"USP11 inhibits KLF4 expression by cleaving K63-linked polyubiquitin chains in HepG2 hepatocarcinoma cells [34]."
| PMC

trips
"USP11 degrades KLF4 via its deubiquitinase activity in liver diseases."

reach
"Deletion of USP11 led to up‐regulation of KLF4 expression (Figure 4A) and longer KLF4 half‐life (Figure 4B)."

reach
"The USP11 negatively regulating KLF4 expression in HCC patients was on average augmented by 4.3‐fold (USP11: 207 and KLF4: 48)."

reach
"These findings suggest that USP11 negatively regulates KLF4 expression in HCC patients.In summary, this is the first study describing USP11 as a modulator of KLF4 in liver dysfunction."
USP11 inhibits KLF4.
| 3
USP11 inhibits KLF4. 3 / 3
| 3

reach
"Furthermore, our results also showed that high USP11 levels inhibit KLF4 stability and expression."

reach
"Altogether, these results indicate that USP11 is a KLF4‐specific deubiquitinase that promotes KLF4 degradation.3.3 USP11 mediates cancer cell proliferation and tumorigenesis by promoting KLF4 instability."

reach
"USP11 degrades KLF4 via its deubiquitinase activity in liver diseases."
USP11 activates KLF4.
| 3
USP11 activates KLF4. 3 / 3
| 3

reach
"We also provide mechanistic insights into KLF4 degradation and show that USP11 depletion inhibits growth and chemoresistance of HCC cells by enhancing KLF4 stability."

reach
"Gain-of-function and loss-of-function experiments revealed that USP11 facilitated the proliferation of hepatocytes and accelerated their transition towards cancer by promoting KLF4 instability [201]."

reach
"These results demonstrated that the increased expression of USP11 in renal tubular cells prevents the ubiquitin degradation of KLF4 and that elevated KLF4 promotes inflammation and renal fibrosis by initiating tubular cell pyroptosis."
USP11 affects AR
| 20 2
USP11 inhibits AR.
| 5
USP11 inhibits AR. 5 / 5
| 5

reach
"For examples, USP11 KD decreased AR peak signals on the KLK3 enhancer, KLK2 promoter, and TMPRSS2 promoter/enhancer (Fig. 3F)."

reach
"USP11 overexpression increased AR half-life from ~4 h (control) to 8 h (Fig. 4 O and P), whereas USP11 KD decreased AR half-life from ~4 h (control) to 2.5 h (SI Appendix, Fig. S4 J and K)."

reach
"To determine whether USP11 loss inhibits PCa cell growth via effects on AR and/or c-Myc, we reexpressed AR, c-Myc, or both in USP11-KD VCaP cells to levels seen in control cells (Fig. 6A)."

reach
"USP11 Can be Targeted to Inhibit AR and c-Myc Activities in PCa Cells.."

reach
"Accordingly, RNA-seq analysis showed that USP11 KD decreased c-Myc (77% inhibition) and AR (43% inhibition) transcript levels (SI Appendix, Fig. S2 F and G), indicating that USP11 promotes their expression."
USP11 deubiquitinates AR.
| 5
USP11 deubiquitinates AR. 5 / 5
| 5

reach
"In this study, we found that the deubiquitinase USP11 deubiquitinates both AR and c-Myc and plays a tumor-promoting role in PCa."

reach
"A recent article reported that USP11 can deubiquitinate and stabilize the MYC and AR proteins, thereby promoting prostate cancer progression 65."

reach
"USP11 Deubiquitinates and Stabilizes AR and c-Myc Protein to Increase Their Levels.."

reach
"We next asked whether USP11 deubiquitinates AR and c-Myc proteins."

reach
"Next, to determine whether USP11 deubiquitinates AR, we coexpressed Flag-AR, Myc-tagged USP11, and/or HA-ubiquitin in 293T cells, lysed cells under denaturing condition, immunoprecipitated Flag-AR with anti-Flag M2 beads and performed western blotting with HA antibodies to monitor Flag-AR polyubiquitination."
USP11 increases the amount of AR.
| 4
USP11 increases the amount of AR. 4 / 4
| 4

reach
"USP11 Promotes Expression of AR and c-Myc mRNA by Deubiquitinating H2A-Ub on Their Promoters.."

reach
"Reexpression of wild-type USP11 in USP11-KD cells (designated USP11 cells) fully restored AR and c-Myc levels, whereas reexpression of the corresponding catalytic-inactive mutant of USP11 in USP11-KD cells (designated USP11 cells) only slightly increased AR and c-Myc protein levels (SI Appendix, Fig. S5K)."

reach
"Our RNA-seq and qRT-PCR analyses indicate that USP11 promotes expression of AR and c-Myc mRNAs (Fig. 2)."

reach
"Our study revealed mechanisms by which USP11 up-regulates levels and activities of AR and c-Myc."
USP11 binds AR.
| 2 2
| 2 2

reach
"~49% (6,164 of 12,496) of AR peaks overlapped with HA-USP11-WT peaks (Fig. 5I), suggesting the interaction between USP11 and AR on select AR target genes."

sparser
"These analyses indicate that the AR LBD interacts with the USP11 N terminus ()."

sparser
"We also observed HA-USP11-WT peaks at AR or c-Myc gene promoter regions where we had detected no HA-USP11-CS peaks ( xref ), consistent with our ChIP-PCR data showing that USP11 binds to AR and c-Myc promoters to induce H2A deubiquitination ( xref and)."

reach
"We also observed HA-USP11-WT peaks at AR or c-Myc gene promoter regions where we had detected no HA-USP11-CS peaks (Fig. 5 C and D), consistent with our ChIP-PCR data showing that USP11 binds to AR and c-Myc promoters to induce H2A deubiquitination (Fig. 4 A and B and SI Appendix, Fig. S5 L and M)."
USP11 decreases the amount of AR.
| 2
USP11 decreases the amount of AR. 2 / 2
| 2

reach
"USP11 KD in AR-positive Rv1, C4-2, or VCaP cells decreased AR mRNA levels (Fig. 2I), while USP11 KD decreased c-Myc transcript levels both in these lines and in AR-negative DU145 cells (Fig. 2J)."

reach
"ChIP-PCR of H2A-Ub and AR indicated that USP11 KD increased H2A-Ub levels and decreased AR levels on these target genes (SI Appendix, Fig. S5 D and E)."
USP11 activates AR.
| 2
USP11 activates AR. 2 / 2
| 2

reach
"USP11 overexpression increased AR half-life from ~4 h (control) to 8 h (Fig. 4 O and P), whereas USP11 KD decreased AR half-life from ~4 h (control) to 2.5 h (SI Appendix, Fig. S4 J and K)."

reach
"USP11 promotes prostate cancer progression by up-regulating AR and c-Myc activity."
USP11 affects mgl-1
| 21
USP11 binds mgl-1.
| 13
| 13

reach
"In this study, we demonstrated a direct interaction between USP11 and Mgl-1."

reach
"We next evaluated the endogenous interaction between Mgl-1 and USP11."

reach
"The results demonstrate both in vitro and in vivo interactions between Mgl-1 and USP11."

reach
"These data indicate that USP11 interacts with Mgl-1, and Mgl-1 has multiple binding sites to USP11."

reach
"In the present study, we identified the interaction between USP11 and Mgl-1."

reach
"Mgl-1 interacts with USP11."

reach
"We next investigated the functional consequence of interaction between Mgl-1 and USP11."

reach
"To address whether RanBPM can mediate interaction between USP11 and Mgl-1, we used RanBPM knockdown cells."

reach
"To reconfirm the interaction between Mgl-1 and USP11, we investigated the interaction between Mgl-1 and USP11 in a Glutathione S-transferase (GST) pull-down in vitro assay."

reach
"Immunoprecipitation assay was performed with an anti-USP11 antibody and the result showed that interaction between USP11 and Mgl-1 was decreased in knockdown of RanBPM."
USP11 deubiquitinates mgl-1.
| 4
USP11 deubiquitinates mgl-1. 3 / 3
| 3

reach
"Endogenous depletion of RanBPM inhibited the stabilizing action of USP11 on Mgl-1, indicating the crucial role of RanBPM in controlling the deubiquitination of Mgl-1 by USP11."

reach
"With the presence of RanBPM, USP11 deubiquitinates Mgl-1 to stabilize, indicating that RanBPM is essential for Mgl-1 stabilization."

reach
"USP11 deubiquitinates and stabilizes Mgl-1 protein."
Modified USP11 leads to the deubiquitination of mgl-1. 1 / 1
| 1

reach
"The result showed that dose dependent expression of USP11 gradually decreased the level of Mgl-1 ubiquitination."
USP11 decreases the amount of mgl-1.
| 2
USP11 decreases the amount of mgl-1. 2 / 2
| 2

reach
"As expected, the depletion of USP11 decreased Mgl-1 expression and increased ubiquitination level of Mgl-1, but the mRNA level of Mgl-1 was decreased by the depletion of USP11."

reach
"Previously, we confirmed that depletion of USP11 decreases the expression level of Mgl-1 and increases the tumor cell growth."
USP11 activates mgl-1.
| 2
USP11 activates mgl-1. 2 / 2
| 2

reach
"Interestingly, the expression of USP11 increased the stability of Mgl-1 protein to some extent."

reach
"Interestingly, RanBPM knockdown by RanBPM shRNA prevented USP11 induced Mgl-1 cell migration in the MDCK cells."
USP11 affects HYCC1
| 21
USP11 activates HYCC1. 10 / 21
| 21

reach
"While USP11 is known to promote HCC metastasis and proliferation, the precise mechanisms, especially those related to cancer metabolism, remain unclear."

reach
"Therefore, our investigation delves deeper into understanding how USP11 impacts HCC progression via its interaction with SREBF1.Our study reveals a novel pathway wherein USP11 promotes lipid metabolism in HCC cells."

reach
"USP11 deficiency inhibits lipogenesis and proliferation of HCC cells in vivo and in vitro."

reach
"Transwell assays indicated that silencing USP11 inhibited the invasion and migration of HCC cells (Fig. 5A, Figure S2E), while overexpressing USP11 promoted these processes (Fig. 5B)."

reach
"USP11 accelerates HCC lipogenesis and progression by up-regulating SREBF1."

reach
"The USP11/SREBF1 axis accelerates HCC lipid synthesis and growth in vivo."

reach
"In summary, these findings suggest that USP11 modulates lipid synthesis, growth, and metastasis in HCC cells via SREBF1."

reach
"We also provide mechanistic insights into KLF4 degradation and show that USP11 depletion inhibits growth and chemoresistance of HCC cells by enhancing KLF4 stability."

reach
"In general, our results demonstrate that USP11 promotes HCC proliferation and metastasis through HIF-1alpha/LDHA-induced glycolysis, providing new insights and the experimental basis for developing new treatments for this patient population."

reach
"15 It has been demonstrated that USP11 promotes colorectal cancer and HCC growth and metastasis by stabilizing NF90 and activating the ERK/MAPK signalling pathway."
TP53 affects USP11
6 | 8 6
TP53 binds USP11.
6 | 6 6
6 | 6 6

sparser
"To better understand the regulation of p53, we tested the interaction between p53 and USP11 using co-immunoprecipitation."

reach
"Furthermore, downregulating RRM1 can modulate the ubiquitination level of p53 by affecting the interaction between p53 and USP11, thereby enhancing the radiation sensitivity of tumor cells by impeding DSB repair [19]."

sparser
"Mechanistically, knockdown of RRM1 stimulates the binding of the ubiquitinating enzyme MDM2 and p53 while inhibiting the binding of the deubiquitinating enzyme USP11 to p53, thereby increasing the ubiquitination of p53."

sparser
"Co-immunoprecipitation (coIP) was performed to verify the interaction between USP11 and p53, and the results demonstrated the binding of USP11 to p53 ( xref C)."

reach
"Furthermore, we evaluated the interaction between p53 and USP11 or MDM2 in control and RRM1 knockdown cells, respectively."

reach
"As shown in Fig. 3G, knockdown of RRM1 enhanced the p53/MDM2 interaction and weakened the p53/USP11 interaction after radiation treatment."

reach
"Our data clearly show that a deficiency in RRM1 promotes the interaction between MDM2 and p53 and weak the binding of USP11 and p53, indicating that RRM1 regulates the stability of p53 through ubiquitination and de-ubiquitination system."

sparser
"Our data clearly show that a deficiency in RRM1 promotes the interaction between MDM2 and p53 and weak the binding of USP11 and p53, indicating that RRM1 regulates the stability of p53 through ubiquitination and de-ubiquitination system."

reach
"Co-immunoprecipitation (coIP) was performed to verify the interaction between USP11 and p53, and the results demonstrated the binding of USP11 to p53 (Figure 3C)."

reach
"To better understand the regulation of p53, we tested the interaction between p53 and USP11 using co-immunoprecipitation."
TP53 inhibits USP11.
| 2
TP53 inhibits USP11. 2 / 2
| 2

reach
"Our previous research demonstrated that RRM1 increases the ubiquitination of p53 by promoting the binding of ubiquitin ligase MDM2 to p53 and inhibiting the binding of deubiquitinase USP11 to p53 [19], indicating a potential yet unknown relationship between RRM1 and USP11."

reach
"Further, p53 overexpression or KLF2 knockdown reversed the inhibitory effects of USP11 silencing on levels of IL-1β and TNF-α in the brain tissues of rats with ICH-like symptoms (Figure 5H)."
USP11 affects PTEN
1 | 14 5
USP11 binds PTEN.
1 | 3 5
1 | 3 5

reach
"Moreover, Lnc-DILC facilitated the association between USP11 (Ubiquitin specific peptidase 11) and PTEN, and inhibited the WWP2-mediated ubiquitylation of PTEN."

reach
"co-immunoprecipitation assays were performed to assess the influence of lnc-DILC overexpression or knockdown in the interaction of PTEN and USP11, and the results demonstrated a promotive effect of lnc-DILC on PTEN-USP11 association (Fig. 6d, e)."

sparser
"Notably, wild-type (WT) USP11 deubiquitinated PTEN in vivo and in vitro, whereas the catalytically inactive USP11 C318S (CS) mutant, which could still bind to PTEN, exerted a dramatically diminished ability to deubiquitinate PTEN, and even exhibited a more heavy ubiquitinating effect (Fig.  xref and Supplementary Fig.  xref )."

sparser
"Taken together, these results suggest that PTEN-PI3K/AKT-FOXO and USP11-PTEN integrate into a PTEN feedforward signaling network (Fig.  xref )."

sparser
"The results of molecular simulation docking showed that USP11 spontaneously bound to PTEN (Fig.  xref d)."

sparser
"The Co-IP results revealed that USP11 and PTEN interact with each other at the protein level (Fig.  xref f)."

reach
"Detecting the association between USP11 and Phosphatase and Tensin Homolog (PTEN) through Co-IP."

sparser
"Further work is needed to precisely characterize the function/activity of the USP11-PTEN axis in DNA repair by the HR pathway to maintain genomic stability and suppress tumorigenesis."
USP11 deubiquitinates PTEN.
| 5
USP11 deubiquitinates PTEN. 5 / 5
| 5

reach
"For example, it was found that USP11, which is regulated by FOXO (Park et al., 2019), can act as a regulator of the PTEN/PI3K pathway by deubiquitinating PTEN, thereby enhancing its stability and indirectly inhibiting PI3K signaling (Park et al., 2019)."

reach
"Furthermore, several DUBs, including HAUSP/USP7, USP10, USP11, USP13, OTUD3, and Ataxin-3 have been shown to reverse the ubiquitination of PTEN, a key antagonist in the PI3K growth-promoting pathway, implicating its function in cancer-specific contexts [15]."

reach
"In contrast, one study has reported that USP11 deubiquitinates and stabilizes the tumor suppressor PTEN in PCa (21)."

reach
"Furthermore, depletion of USP11 by siRNAs attenuated the lnc-DILC-induced deubiquitination of PTEN (Fig. 6c)."

reach
"Mechanistically, USP11 deubiquitinates PTEN to increase its stability, which promotes the inhibition of PI3K signalling 50."
USP11 ubiquitinates PTEN.
| 2
USP11 ubiquitinates PTEN. 2 / 2
| 2

reach
"It has been reported that, on the one hand, USP11 promotes cell proliferation and tumorigenesis through stabilizing its substrates cIAP2, NONO, NF90, E2F1, and cytoplasmic p21, but on the other hand, USP11 suppresses tumorigenesis by deubiquitinating its substrates PML, Mgl-1, PTEN, ARID1A, and nuclear p21 (29, 30)."

reach
"As for DUBs, USP11 has been discovered to be down-regulated in a range of malignancies, including brain, breast, skin, and prostate cancers, and USP11 could reduce PI3K/AKT activity by reversing PTEN [MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
USP11 decreases the amount of PTEN.
| 2
USP11 decreases the amount of PTEN. 2 / 2
| 2

reach
"In individuals with neoplasia, USP11 expression is downregulated, which is associated with the expression level of PTEN and the location of FOXO within the nucleus."

reach
"In VCaP cells, we found that USP11 KD decreased PTEN levels and increased levels of phospho-AKT (Fig. 1I), consistent with the report of PTEN as a USP11 substrate."
USP11 activates PTEN.
| 2
USP11 activates PTEN. 2 / 2
| 2

reach
"Mechanistically, PTEN inhibits PI3K/AKT, leading to FOXO1 dephosphorylation and nuclear translocation, activating the binding of FOXO1 to the USP11 promoter, which increases USP11 protein and mRNA levels to increase PTEN stability."

reach
"In addition, resveratrol and psammaplysene A have been found to induce USP11 transcription mediated through FOXO and, in turn, appreciably elevate PTEN protein levels by increasing PTEN deubiquitination and hence PTEN stability ."
USP11 affects EIF4B
4 | 16
USP11 binds EIF4B.
4 | 7
4 | 7

reach
"Significantly, it was established that USP11 is bonafide substrate of S6Kinase and phosphorylation of USp11 at Ser 453 regulates the recruitment of USP11 on cap complex as well as its interaction with eIF4B, thus increasing the eIF4B driven oncogenes expression."

reach
"Furthermore, FASN enhanced the interaction between USP11 and eIF4B in diffuse large-B cell lymphoma cell lines, thus promoting unconstrained protein translation and growth [25]."

reach
"We showed before that fatty acid synthase is involved with DLBCL progression in part by inducing PI3K-Akt-S6Kinase signaling to enhance interactions a USP11-eIF4B complex ."

reach
"In light of this apparently conflicting observation based on in vitro and cell based deubiquitination assays, we next examined whether the interaction between USP11 and eIF4B was S6Kinase dependent."

reach
"Finally, the interaction between eIF4B and USP11 is directly modulated by FASN mediated S6Kinase activity."

reach
"Fatty Acid Synthase induced S6Kinase facilitates USP11 and eIF4B complex formation for sustained oncogenic translation in DLBCL."

reach
"USP11 interacts and deubiquitinates eIF4B."
USP11 activates EIF4B.
| 4
USP11 activates EIF4B. 4 / 4
| 4

reach
"USP11 deubiquitinates and stabilizes the translation initiation factor EIF4B to promote EIF4B-dependent oncogenic translation, thus phosphorylating USP11 enhances the stability and abundance of EIF4B, which ultimately facilitates the occurrence of lymphoma."

reach
"A sequential co-inhibition of PI3K signaling (PI3K, Akt, mTOR, and p70-RSK) along with C75 indicated that constitutively active PI3K signaling regulates USP11 mediated eIF4B protein stability."

reach
"However, USP11 could also promote tumorgenesis by stabilizing Snail, eIF4B and cIAP2 [22,37,38]."

reach
"USP11 stabilizes and enhances Eukayotic translation initiation factor 4B (eIF4B) activity and promotes oncogenic translation in diffuse large B cell lymphoma (DLBCL) (34)."
USP11 deubiquitinates EIF4B.
| 3
USP11 deubiquitinates EIF4B. 3 / 3
| 3

reach
"Next, to demonstrate whether USP11 can directly deubiquitinate eIF4B, we performed in vitro deubiquitinase assays."

reach
"Furthermore, while embarking on the molecular characterization, we noted that USP11 in a FASN-S6kinase-dependent manner deubiquitinates eIF4B to enhance its protein level (11)."

reach
"USP11 deubiquitinates and stabilizes the translation initiation factor EIF4B to promote EIF4B-dependent oncogenic translation, thus phosphorylating USP11 enhances the stability and abundance of EIF4B, which ultimately facilitates the occurrence of lymphoma."
USP11 increases the amount of EIF4B.
| 2
Modified USP11 increases the amount of EIF4B. 2 / 2
| 2

reach
"To understand the functional consequences of USP11-eIF4B interaction, we first examined whether expression of USP11 modulates eIF4B protein levels."

reach
"Furthermore, to buttress our findings, we overexpressed USP11 in a panel of DLBCLs and observed that ectopic expression of USP11 indeed increased basal protein levels of eIF4B."
SIRT3 affects USP11
3 | 7 10
3 | 7 10

sparser
"Reverse Co-IP demonstrated that USP11 interacted with M2 domain of Sirt3 ( xref M)."

sparser
"Collectively, the results above proved that USP11 interacts with Sirt3, and the interaction depended on the M2 domain of USP11 and M2 domain of Sirt3."

reach
"Sirt3 has been found to increase oxidative stress and induce ferroptosis to promote IVDD, while USP11 can bind to Sirt3 and stabilize Sirt3 to slow IVDD progression (Zhu et al., 2023a)."

sparser
"In the current study, IP/MS was performed to investigate mechanism through which Sirt3 was regulated in the process of oxidative stress-induced ferroptosis, and we found that Sirt3 protein interacts with USP11 in HNP cells."

sparser
"Further investigations proved the direct interaction of USP11 and Sirt3 as described above."

sparser
"The direct interaction of USP11 and Sirt3 is a crucial molecular event that inhibit oxidative stress-induced ferroptosis, thus improves IVDD and relives pain reaction."

sparser
"It may provide new methods of diagnosis and treatment for promoting NP cells survival and relieving pain after IVDD to understand the molecular mechanism of the oxidative stress-induced ferroptosis and signaling pathways of the interaction of USP11 and Sirt3 ( xref )."

reach
"In conclusion, the current study emphasized the importance of the interaction of USP11 and Sirt3 in the pathological process of IVDD via regulating oxidative stress-induced ferroptosis, and USP11-mediated oxidative stress-induced ferroptosis is identified as a promising target for treating IVDD."

sparser
"USP11 interacts with Sirt3."

reach
"The interaction of USP11 and Sirt3 was further confirmed using Co-IP analysis."
| 12 6
Mitoxantrone inhibits USP11.
| 9 6
| 9 6

sparser
"Interestingly, we found that in Panc1 cells that have previously been shown to have high amounts of USP11 mRNA and to undergo dose-dependent cell death upon treatment with mitoxantrone that inhibits USP11 ( xref ), cell viability is highly affected by FYLIR peptide exposure."

reach
"The evidence indicates that targeted inhibition of USP11 by mitoxantrone alleviates the occurrence of aGvHD in mice.To reveal the mechanism of aGvHD induced by USP11, we first examined the hematopoiet[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

reach
"We first determined whether mitoxantrone inhibits USP11 deubiquitinase activity."

reach
"Burkhart et al., using a fluorescent based high-throughput assay, screened more than 2000 FDA approved chemical entities and reported that mitoxantrone inhibits USP11 activity under in-vitro conditions."

reach
"Consistently, we also found that NF- κ B was more restrained in nuclei after USP11 was inhibited by mitoxantrone."

reach
"Moreover, inhibition of USP11 by Mitoxantrone (It was original developed as type II DNA topoisomerase inhibitor."

sparser
"In addition, research has revealed that mitoxantrone can inhibit USP11 and affect the survival of pancreatic ductal adenocarcinoma cells [ xref ]."

reach
"Mitoxantrone inhibits USP11 thus offering opportunities for targeting the BRCA1-MYCN interaction [148]."
| PMC

sparser
"Indeed, depletion of USP11 or inhibition of USP11 by a non-specific inhibitor Mitoxantrone led to significantly sensitization of triple negative breast cancer cells to the chemo-therapeutic agent cisplatin further confirming the therapeutic value of targeting USP11."

reach
"In addition, research has revealed that mitoxantrone can inhibit USP11 and affect the survival of pancreatic ductal adenocarcinoma cells [48]."
Mitoxantrone activates USP11.
| 3
| 3

reach
"Furthermore, treatment with the Usp11 inhibitor, mitoxantrone, successfully targeted and inhibited Usp11, thereby alleviating the reduction in MZ B cells in the spleen following total body irradiation."

reach
"87,107,108 Mitoxantrone, a PARPi that targets the USP11 key enzyme that interacts with BRCA2, has been shown to be 40- to 20,000-fold more potent than the current gemcitabine first-line treatment in 2[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

reach
"Additionally, the type II topoisomerase inhibitor mitoxantrone inhibits USP11 and demonstrates increased progression-free and overall survival in a relapsed T-ALL clinical trial, suggesting that USP11 inhibition can be exploited therapeutically [14, 15]."
XIAP affects USP11
4 | 5 9
4 | 5 9

sparser
"Additionally, USP11 interacts with XIAP to suppress apoptosis in breast cancer cells [ xref ]."

reach
"The above analysis helped us narrow down the interfacial residues of the XIAP and USP11 complex to 503-963 (on USP11) and 200-210 (on XIAP)."

reach
"As shown in XREF_FIG D-F, replacing Leu207 with proline, but not mutation of Cys203 or Lys206 to alanine, significantly destabilizes XIAP, presumably, due to the perturbation of the interfacial interaction between USP11 and XIAP and reduced deubiquitylation capacity of USP11."

reach
"These results further suggested that Leu207 was the critical residue on XIAP in mediating the binding between USP11 and XIAP."

reach
"In addition, expression of wild-type XIAP leads to the inhibition of anoikis, we observed that disruption of interaction between XIAP and USP11 by expression of XIAP L207P mutant (interaction deficient) significantly attenuates the inhibition of anoikis by XIAP (Supplemental Fig. 6)."

reach
"XIAP is directly bound to USP11 as shown here by both experimental and computational examinations."

sparser
"The interaction of XIAP with USP11 was confirmed by blotting complexes having endogenous USP11 precipitated with XIAP specific antibodies ( xref C) or complexes of overexpressed tagged USP11 with antibodies against Myc tag ( xref D) and probing for XIAP."

sparser
"To further characterize and visualize the mechanism of interaction between USP11 and XIAP, we performed molecular docking simulations, using the computational methods described earlier ( xref )."

sparser
"To validate the impact of Cys203 and Leu207 as well as Lys206 on XIAP in mediating the interaction of XIAP with USP11, we performed a multiple sequence alignment at that particular region (residues 200–210), using the aligned the amino acid stretch from 200 to 210 of human XIAP with mouse, rat and xenopus XIAP sequences as well as the human CIAP1 and CIAP2."

sparser
"As shown in xref D–F, replacing Leu207 with proline, but not mutation of Cys203 or Lys206 to alanine, significantly destabilizes XIAP, presumably, due to the perturbation of the interfacial interaction between USP11 and XIAP and reduced deubiquitylation capacity of USP11."
USP11 affects NFE2L2
5 1 | 9 4
USP11 binds NFE2L2.
5 | 1 4
5 | 1 4

sparser
"The innate interaction of USP11 and Nrf2 was determined through Co-IP assays in CRC cells in our study (Fig. xref )."

sparser
"In the dual-luciferase reporter assay, we found that the luciferase activity of the Nrf2 group was significantly higher than that of the Vector group, indicating that Nrf2 could bind to the USP11 promoter region (Fig. xref )."

sparser
"Therefore, targeted suppression of the USP11-Nrf2 axis or promotion of Nrf2 ubiquitination to reduce the high expression of Nrf2 may represent effective strategies to reduce drug resistance and increase the susceptibility to ferroptosis of LUAD cells."

sparser
"In addition, Nrf2 could bind to the USP11 promoter region to enhance its transcription, forming a positive feedback loop."

reach
"It inhibits mitochondrial apoptosis and activates CRC progression through the binding of NRF2 to the antioxidant reaction element (ARE) in the USP11 promoter to activate its transcription [113]."
USP11 deubiquitinates NFE2L2.
1 | 6
USP11 deubiquitinates NFE2L2. 6 / 7
1 | 6

reach
"We further found that USP11 deubiquitinates NRF2; this modification stabilizes NRF2."

reach
"Moreover, the transcription factor nuclear factor (erythroid-derived 2)-like 2 (NRF2), which plays a crucial role in cancer progression, was deubiquitinated by USP11, and the depletion of USP11 contributes to the suppression of cell proliferation and the induction of ferroptosis [12]."

reach
"Similarly, deubiquitination of NRF2 by USP11 has been shown to stabilize NRF2 signaling in cell lines and in the context of tumors [67] and to deubiquitinase the TGF-βR1 and thereby enhance TGF-β signaling [68]."

reach
"Ubiquitin-specific-processing protease 11 deubiquitinates and stabilizes NRF2, which contributes to the suppression of ferroptosis (Meng et al., 2021)."

reach
"USP11 overexpression could significantly relieve NRF2 ubiquitination and degradation induced by RSL3 treatment of KLK LUAD cells (Figure 6D), suggesting that RSL3 inhibition of NRF2 expression might be through USP11 suppression in KLK LUAD cells."

reach
"In contrast, the deubiquitinating enzyme ubiquitin specific peptidase 11 (USP11) reduces cell sensitivity to ferroptosis by deubiquitinating NFE2L2 and stabilizing its expression in lung cancer cells [156]."
USP11 inhibits NFE2L2.
| 2
USP11 inhibits NFE2L2. 2 / 2
| 2

reach
"In CRC, the inhibition of USP11 expression could promote the ubiquitination degradation of Nrf2, thereby inhibiting the Nrf2/ARE signaling pathway."

reach
"Hence, USP11/Nrf2 positive feedback loop inhibited mitochondrial apoptosis of CRC cells by activating Nrf2/ARE signaling pathway, thus promoting CRC progression."
USP11 affects HLA-DMB
| 9 10
| 9 10

sparser
"DMB Directly Binds to USP11 and Inhibits Its Deubiquitination on GREM1."

sparser
"It is necessary to reveal the direct binding of DMB to USP11 firstly."

sparser
"These findings revealed that DMB directly bound to USP11."

sparser
"Taken together, DMB directly bound to USP11 and accelerated GREM1 degradation through the disruption of USP11 deubiquitinating GREM1."

sparser
"Met776 of USP11 Is Critical for DMB Binding to USP11."

sparser
"The result showed that M776A mutation decreased DMB binding to USP11 ( xref C)."

sparser
"Together, these results illustrated that Met776 was vital for DMB binding to USP11 and the disruption of USP11 deubiquitinating GREM1 by DMB."

reach
"DMB Directly Binds to USP11 and Inhibits Its Deubiquitination on GREM1."

reach
"It is necessary to reveal the direct binding of DMB to USP11 firstly."

reach
"The biotin–avidin system was a preferred choice to detect DMB directly binding to USP11."
NONO affects USP11
3 | 6 10
3 | 6 10

reach
"USP11 interacted with NONO and reversed its poly-ubiquitination."

reach
"3.1 USP11 interacts with NONO."

reach
"Furthermore, we investigated the interaction of endogenous USP11 and NONO in melanoma cells SK-Mel-28 and A375 using co-IP."

reach
"Taken together, these results suggest there is a direct interaction between USP11 and NONO in vivo."

reach
"We demonstrated that USP11 interacted with NONO, removed poly-ubiquitin chains conjugated onto NONO."

sparser
"Collectively, these results demonstrate that USP11 is a new deubiquitinase of NONO and that the signalling axis of USP11NONO is significantly involved in melanoma proliferation."

sparser
"USP11 interacted with NONO and reversed its poly‐ubiquitination."

sparser
"USP11 interacts with NONO."

sparser
"Previous studies have demonstrated that there is the possibility that USP11 and NONO may interact with each other. xref In order to ascertain the hypothesis, we transfected Flag‐USP11 and Myc‐NONO into HEK293 cells, collected total proteins and used the antibodies against Flag/Myc and the isotype‐matched control IgGs to perform coimmunoprecipitation (co‐IP)."

sparser
"Furthermore, we investigated the interaction of endogenous USP11 and NONO in melanoma cells SK‐Mel‐28 and A375 using co‐IP."
HLA-DMB affects USP11
| 9 10
| 9 10

sparser
"DMB Directly Binds to USP11 and Inhibits Its Deubiquitination on GREM1."

sparser
"It is necessary to reveal the direct binding of DMB to USP11 firstly."

sparser
"These findings revealed that DMB directly bound to USP11."

sparser
"Taken together, DMB directly bound to USP11 and accelerated GREM1 degradation through the disruption of USP11 deubiquitinating GREM1."

sparser
"Met776 of USP11 Is Critical for DMB Binding to USP11."

sparser
"The result showed that M776A mutation decreased DMB binding to USP11 ( xref C)."

sparser
"Together, these results illustrated that Met776 was vital for DMB binding to USP11 and the disruption of USP11 deubiquitinating GREM1 by DMB."

reach
"DMB Directly Binds to USP11 and Inhibits Its Deubiquitination on GREM1."

reach
"It is necessary to reveal the direct binding of DMB to USP11 firstly."

reach
"The biotin–avidin system was a preferred choice to detect DMB directly binding to USP11."
USP11 affects ferroptosis
| 1 17
USP11 activates ferroptosis.
| 1 11
| 1 11

reach
"Overexpression of USP11 significantly ameliorate oxidative stress-induced ferroptosis, thus relieving IVDD by increasing Sirt3."

reach
"Specifically, we found that USP11 enhances breast cancer progression and ferroptosis through PGAM5."

reach
"Furthermore, the deubiquitinating enzyme USP11 promotes autophagy-dependent ferroptosis by stabilizing BECN1, leading to ferroptosis-mediated spinal cord ischemia-reperfusion injury [163]."

reach
"What accords with previous studies is that overexpression of Sirt3 could ameliorate IVDD induced by USP11 deletion [84], which indicates that the stability of Sirt3 is essential for regulatory effect of USP11 on oxidative stress-induced ferroptosis in IVDD.In conclusion, ferroptosis is associated closely with the process of IVDD."

reach
"The decreased autophagy markedly weakened the ferroptosis mediated by USP11 and autophagy induction had a synergistic effect with USP11."

reach
"Zhu et al39 demonstrated that the deubiquitinase USP11 stabilized SIRT3 to inhibit oxidative stress-induced ferroptosis in human NP cells."

eidos
"Interestingly , upregulating the expression of USP11 also appeared to increase the production of autophagosomes and to cause substantial autophagic flux , a potential mechanism through which USP11 may enhance ferroptosis ."

reach
"Indeed, USP11 is a recently identified cysteine protease DUBs as the NRF2 target in NSCLC cells and knockdown of USP11 expression sensitized NSCLC cells to ROS-induced ferroptosis [19]."

reach
"Knockdown of USP11 in vitro and KO of USP11 in vivo (USP11 -/Y ) significantly decreased neuronal cell ferroptosis."

reach
"Interestingly, upregulating the expression of USP11 also appeared to increase the production of autophagosomes and to cause substantial autophagic flux, a potential mechanism through which USP11 may enhance ferroptosis."
USP11 inhibits ferroptosis.
| 6
| 6

reach
"Conversely, depletion of USP11 inhibited H1299 cell proliferation and induced ferroptosis [143]."

reach
"Notably, we confirmed that USP11 depletion promotes oxidative stress-induced ferroptosis by degrading Sirt3, leading to more severe IVDD and poor pain-related behavioral scores."

reach
"In addition, the loss-and-gain of function method was used to confirm that USP11 inhibits oxidative stress-induced ferroptosis via deubiquinating and stabilizing Sirt3, and ultimately mitigates IVDD and pain-related behavioral scores, which was reported for the first time."

reach
"Notably, USP11 depletion promotes oxidative stress-induced ferroptosis by destabilizing Sirt3, leading to more severe IVDD and poor pain-related behavioral scores.2 Methods and materials."

reach
"The results above confirmed that USP11 could stabilize Sirt3, thereby inhibit ferroptosis and improve pain-related behavioral scores in vitro, the in vivo experiments were then performed using KO of USP11 mice."

reach
"Depletion of USP11 inhibits cell proliferation and induces ROS-mediated stress-induced ferroptosis, an effect that can be mitigated by overexpression of NRF2."
| 1 17
| 1 11

reach
"This revealed that USP11 did not facilitate the malignant progression of CRC by inhibiting apoptosis, which was different from a previous study that reported that USP11 knockdown induced apoptosis [22]."

eidos
"* P < 0.05 MiR-132-3p constrains cell growth and metastasis and increases apoptosis by decreasing USP11 in colorectal cancer cells To study the function of miR-132-3p / USP11 axis on colorectal cancer progression , HCT116 and SW480 cells were transfected with miR-NC , miR-132-3p mimic , miR-132-3p mimic + pcDNA , or USP11 overexpression vector ."

reach
"Knockdown of USP11 significantly increased GEM sensitivity and apoptosis in BLCA cells, whereas USP11 overexpression had the opposite effect (Figure S12)."

reach
"Flow cytometry and TUNEL assay revealed that the overexpression of HOXC5 rescued USP11 knockdown-induced apoptosis in human SSCs (Fig. 7H–K)."

reach
"Hence, USP11/Nrf2 positive feedback loop inhibited mitochondrial apoptosis of CRC cells by activating Nrf2/ARE signaling pathway, thus promoting CRC progression."

reach
"The overexpression of MYC effectively reversed the increased GEM sensitivity and induced apoptosis caused by USP11 knockdown (Figure S13K-O)."

reach
"Collectively, these data imply that overexpression of HOXC5 can rescue proliferation, DNA synthesis, and apoptosis caused by USP11 knockdown in human SSCs."

reach
"In contrast, HOXC5 overexpression reversed the effect of proliferation and apoptosis induced by USP11 silencing."

reach
"Cell apoptosis assays showed that silencing USP11 increased the apoptosis rate of HCC cells (Fig. S4A/C), while overexpressing USP11 inhibited these processes (Fig. S4B)."

reach
"Additionally, USP11 interacts with XIAP to suppress apoptosis in breast cancer cells [35]."
| 6

reach
"In conclusion, our findings show that USP11 exacerbates injury in TBI through PKM2 and causes neurological impairment and neuronal apoptosis through the PI3K/AKT signaling pathway."

reach
"The USP11/Nrf2 positive feedback loop promotes colorectal cancer progression by inhibiting mitochondrial apoptosis."

reach
"USP11 silencing led to decreases in proliferation and DNA synthesis and an enhancement in apoptosis of human SSCs."

reach
"We have demonstrated that USP11 silencing suppressed the proliferation and DNA synthesis of human SSCs and enhanced their apoptosis, and we identified HOXC5 as a downstream target of human SSCs."

reach
"In this study, we demonstrated that USP11 silencing led to decreases in proliferation and DNA synthesis and an enhancement in apoptosis of human SSCs."

reach
"Furthermore, elevated USP11 levels exacerbate blood-brain barrier damage, brain edema, and neurobehavioral impairment and cause apoptosis induction through Pkm2 upregulation."
USP11 affects E2F1
1 1 | 9 7
USP11 binds E2F1.
1 | 4 7
1 | 4 7

sparser
"Additionally, it has also been reported that GSK3β increases the interaction of E2F1 with USP11, which results in the deubiquitination and stabilization of E2F1, which in turn activates PEG10 expression to promote proliferation in A549 [ xref ]."

sparser
"Qiao’s team showed that Ubiquitin specific peptidase 11 (USP11) bound to E2F1 and promoted its stability by deubiquitination, and E2F1/USP11 formed a feedback loop to impede HCC tumor growth by inhibiting autophagy via activating ERK/mTOR pathway [ xref ]."

reach
"Upon nuclear translocation, USP11 binds to E2F1 and inhibits the ubiquitin-mediated degradation of E2F1, thereby enhancing the transcriptional expression of RAD51AP1."

reach
"Phosphorylated E2F1 binds to ubiquitin specific peptidase 11, leading to reduced degradation of E2F1 due to deubiquitination."

sparser
"In addition, serine phosphorylation of E2F1 by GSK3 in lung epithelial cells increased the binding of E2F1 to USP11 and reduced the degradation of E2F1 in the nucleus [ 36 ]."

reach
"Qiao’s team showed that Ubiquitin specific peptidase 11 (USP11) bound to E2F1 and promoted its stability by deubiquitination, and E2F1/USP11 formed a feedback loop to impede HCC tumor growth by inhibiting autophagy via activating ERK/mTOR pathway [17]."

reach
"Results from co-immunoprecipitation and ubiquitination assays demonstrated that USP11 interacted with E2F1 and maintained E2F1 protein stability by removing its ubiquitin."

sparser
"To explore the interaction between USP11 and E2F1, a Co-IP assay was carried out."

sparser
"Phosphorylated E2F1 binds to ubiquitin specific peptidase 11, leading to reduced degradation of E2F1 due to deubiquitination."

sparser
"In this report, we systematically showed that USP11 interacts with E2F1 and maintains its stability by removing its ubiquitin."
USP11 deubiquitinates E2F1.
1 | 3
USP11 deubiquitinates E2F1. 3 / 4
1 | 3

reach
"USP11 may stimulate tumorigenesis by deubiquitinating cIAP2, NONO, NF90, E2F1, or cytoplasmic p21; however, it may also inhibit tumorigenesis through stabilizing PML, Mgl-1, PTEN, ARID1A, or nuclear p21 (29, 30)."

reach
"USP11 promotes proliferation and metastasis of hepatocellular carcinoma cells by deubiquitinating and stabilizing E2F1 (19), and USP11 promotes invasion and metastasis of ovarian cancer by deubiquitinating and stabilizing the transcription factor Snail (20)."

reach
"Additionally, it has also been reported that GSK3β increases the interaction of E2F1 with USP11, which results in the deubiquitination and stabilization of E2F1, which in turn activates PEG10 expression to promote proliferation in A549 [33]."
USP11 phosphorylates E2F1.
| 2
USP11 phosphorylates E2F1. 2 / 2
| 2

reach
"Moreover, Heeyoung Yang et al. [30] found that USP11 regulates liver disease status by removing the K63 ubiquitin chain of KLF4; and Dan Wang et al. [31] identified that USP11 drives Peg10 gene expression and activates lung epithelial cells by removing the K63 ubiquitin chain of phosphorylated E2F1."

reach
"Phosphorylated E2F1 binds to ubiquitin specific peptidase 11, leading to reduced degradation of E2F1 due to deubiquitination."
USP11 affects Ubiquitin
| 14 3
USP11 activates Ubiquitin.
| 11
| 11

reach
"USP7 cut the polyubiquitin chain into varying lengths, whereas USP11 primarily produces monoubiquitin by cleaving ubiquitin from the free end of the polyubiquitin chain."

reach
"ATAD5 (1 to 603) enhanced USP7- and USP11-mediated Ub–PCNA deubiquitination on DNA, despite the relative weak interaction between ATAD5 and USP7–USP11."

reach
"Moreover, Heeyoung Yang et al. [30] found that USP11 regulates liver disease status by removing the K63 ubiquitin chain of KLF4; and Dan Wang et al. [31] identified that USP11 drives Peg10 gene expression and activates lung epithelial cells by removing the K63 ubiquitin chain of phosphorylated E2F1."

reach
"Since USP11 levels in AGS cells were restored by MG132 treatment, the difference in USP7 effects in the two cell lines might reflect different turnover rates of USP11 in the two cell backgrounds, such as could be caused by different levels of USP11 targeted ubiquitin ligases."

reach
"USP11 upregulates IkappaB kinase alpha in a ubiquitin independent manner XREF_BIBR, while USP18 has been shown to negatively regulate interferon signalling through protein interactions that are independent of its isopeptidase activity XREF_BIBR."

reach
"Senescent cells also directly secrete TGF-β1 to remodel the microenvironment [175] , and the deubiquitinating enzyme Usp11 within it inhibits ubiquitin degradation of TβR-Ⅱ, which promotes the activat[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

reach
"However, it is currently unknown whether there is a functional interaction between UAF1–USP1, USP7, USP11, and ATAD5 that leads to Ub–PCNA deubiquitination.We have previously reported that ATAD5–RLC can unload mono-Ub or poly-Ub–PCNA from DNA (46)."

reach
"These results demonstrated that the increased expression of USP11 in renal tubular cells prevents the ubiquitin degradation of KLF4 and that elevated KLF4 promotes inflammation and renal fibrosis by initiating tubular cell pyroptosis."

reach
"For example, Xiaolin Zhu et al. [28] identified that USP11 promotes ovarian cancer chemoresistance by removing the K48 ubiquitin chain of BIP."

reach
"Mazin A Al-Salihi et al. [29] found that USP11 augmented TGFβ signaling by removing the K48 ubiquitin chain of ALK5."
USP11 inhibits Ubiquitin.
| 3
| 3

reach
"Finally, ubiquitin conjugation to RanBPM was inhibited in a dose dependent manner by the addition of recombinant USP11."

reach
"USP44, USP17L2/DUB3, USP11, ZUFSP and POH1 loss promotes the excessive spreading of Ub at DSBs and concomitant excessive accumulation of 53BP1 [57–65]."

reach
"USP7 or USP11 depletion increased the amount of chromatin-bound Ub–PCNA particularly after UV treatment, but to a lesser extent than USP1 or ATAD5 depletion."
USP11 binds Ubiquitin.
| 3

sparser
"USP11 Asn 313 in the CCL region interacts with the carbonyl group of the Ub-GGG Gly 76 and USP11 Asn 316 forms a hydrogen-bonding interaction with Ub-GGG Gly 78 ."

sparser
"BL1 loop conformations also differ associated with the substrate-binding status ( xref , B and D ): USP11 Phe 831 interacts with Ub-GGG Leu 71 and Leu 73 ."

sparser
"The experiments revealed that the USP11 DU domains do not bind ubiquitin with detectable affinities (Figure S4, xref ) or affect the catalytic efficiency of the enzyme using ubiquitin-AMC as substrate (Figure xref )."
| 14

reach
"In summary, in vitro assays indicated that USP11 enhances CRC cell proliferation, migration, and invasion, but showed no effect on apoptosis.3.3 USP11 enhances tumorigenesis and liver metastasis of CRC in vivo."

reach
"The authors postulated that USP11 up-regulates and augments the ability of proliferation, invasion, migration and collagen deposition of keloid-derived fibroblasts (KFBs) through deubiquitinating TGF-β receptor II (TβRII)."

reach
"Taken together, these data indicate that USP11 overexpression may be relevant with the tumorigenesis and progression of CRC.3.2 USP11 promotes CRC cell proliferation, migration, and invasion in vitro."

reach
"This suggested that USP11 promotes CRC invasion and metastasis."

reach
"USP11 elevates the ability of proliferation, collagen deposition, invasion and migration of keloid-derived fibroblasts by deubiquitinating TβRII."

reach
"Also, USP11 had been confirmed to accelerate proliferation, invasion and migration in keloid derived-fibroblasts ."

reach
"Moreover, in vitro and in vivo experiments confirmed that USP11 could promote the migration and invasion of HCC cell."

reach
"The combination of USP11 overexpression and BLM treatment produced increased cell migration and invasion, compared with cells treated with BLM alone (Figure 5G and 5H)."

reach
"USP11 promotes HCC cell survival, invasion, and metastatic potency in vitro and in vivo."

reach
"Transwell assays indicated that silencing USP11 inhibited the invasion and migration of HCC cells (Fig. 5A, Figure S2E), while overexpressing USP11 promoted these processes (Fig. 5B)."

reach
"In addition to those effects, USP11 knockdown also repressed neutrophil infiltration and the production of proinflammatory cytokines IL-1β and TNF-α, indicative of an anti-inflammatory potency of silencing USP11."

reach
"Inhibition of USP11 alleviates RILI, as evidenced by decreased apoptosis, reduced pulmonary vessels permeability, and diminished infiltration of neutrophils and macrophages, along with increased endothelial cell proliferation in lung [74]."

reach
"The rescue experiments revealed that IGF2BP3 overexpression could effectively reverse the decrease in cell proliferation, migration, and invasion caused by USP11 knockdown."

reach
"Knockdown of USP11 promotes cell proliferation, migration, and invasion in a YAP-dependent manner [36]."

reach
"Furthermore, our results show that knockdown of USP11 promotes cell growth, migration, and invasion in a YAP dependent manner."
USP11 affects BRCA2
4 1 | 2 7 3
USP11 binds BRCA2.
4 | 1 2 2
4 | 1 2 2

reach
"BRCA2 is ubiquitinated in vivo and interacts with USP11, a deubiquitinating enzyme that exhibits prosurvival function in the cellular response to DNA damage."

sparser
"Mitoxantrone, a PARPi that targets the USP11 key enzyme that interacts with BRCA2, has been shown to be 40- to 20,000-fold more potent than the current gemcitabine first-line treatment in 2 PDAC cell [MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"Another DUB, USP11, forms a complex with BRCA2."

reach
"BRCA2 is ubiquitinated in vivo and interacts with USP11, a deubiquitinating enzyme that exhibits prosurvival function in the cellular response to DNA damage."

trips
"BRCA2 is ubiquitinated in vivo and interacts with USP11, a deubiquitinating enzyme that exhibits prosurvival function in the cellular response to DNA damage."
USP11 deubiquitinates BRCA2.
1 | 4
USP11 deubiquitinates BRCA2. 4 / 5
1 | 4

reach
"While BRCA2 could be deubiquitinated by USP11 in transient overexpression assays, a catalytically inactive USP11 mutant had no effect on BRCA2 ubiquitination or protein levels."

reach
"Although when overexpressed USP11 can deubiquitinate BRCA2 in vivo, it does not antagonize the MMC-induced ubiquitination and degradation of BRCA2 [185]."
| PMC

reach
"Several lines of evidence point towards a critical role for USP11 in regulating BRCA2 stability : USP11 interacts and co-purifies with BRCA2, USP11 deubiquitylates BRCA2, USP11 depletion sensitises cells to DNA damaging agents and finally, mitomycin C (MMC) regulates the stability of BRCA2 in a USP11 dependent manner [XREF_BIBR]."

reach
"USP11 was shown to interact with and deubiquitinates BRCA2 and as well counteracts RNF4 induced SUMO-ubiquitin hybrid chains, suggesting the pleiotropic roles at DSBs sites [XREF_BIBR]."
USP11 ubiquitinates BRCA2.
| 1 1 1
USP11 ubiquitinates BRCA2. 3 / 3
| 1 1 1

reach
"At the protein level, BRCA2 is ubiquitinated by USP11 to undergo subsequent degradation [XREF_BIBR]."

trips
"While BRCA2 could be deubiquitinated by USP11 in transient overexpression assays, a catalytically inactive USP11 mutant had no effect on BRCA2 ubiquitination or protein levels."

sparser
"At the protein level, BRCA2 is ubiquitinated by USP11 to undergo subsequent degradation [ xref ]."
PPP1CA affects USP11
2 | 6 9
2 | 6 9

sparser
"Mechanistically, nodularin‐R attenuates the interaction between PPP1CA and USP11 (deubiquitinating enzyme), potentially promoting PPP1CA degradation."

sparser
"These findings indicated that USP11 and PPP1CA could interact both endogenously and exogenously."

reach
"Mechanistically, nodularin-R attenuates the interaction between PPP1CA and USP11 (deubiquitinating enzyme), potentially promoting PPP1CA degradation."

reach
"Moreover, the USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway."

sparser
"Given that USP11 has been reported to stabilise PPP1CA by deubiquitinating it and shielding it from proteasome‐mediated degradation [ xref ], our aim was to deepen our understanding of how nodularin‐R influences the interaction between USP11 and PPP1CA."

sparser
"Additionally, the total van der Waals force of the main chains within the USP11PPP1CA‐Nodularin‐R complex increased from −445.634 kcal/mol (in the USP11PPP1CA complex) to −396.537 kcal/mol."

reach
"The USP11/PPP1CA complex promotes CRC growth and metastasis, and may represent a promising potential prognostic marker.Alt-text: Unlabelled Box1 Introduction."

sparser
"Furthermore, the free binding energy within the USP11PPP1CA‐Nodularin‐R complex increased from −68.92 ± 3.96 kcal/mol (in the USP11PPP1CA complex) to −28.13 ± 3.94 kcal/mol (Table  xref )."

reach
"The results revealed that USP11 can form a complex with PPP1CA in HCT116 cells (Fig. 4c)."

sparser
"Moreover, the diminished interaction between PPP1CA and USP11, along with the increased proteasome‐mediated degradation of PPP1CA induced by nodularin‐R, likely contribute significantly to this inhibition."
USP11 is modified
1 | 1 13 2
USP11 is phosphorylated.
| 11 2
USP11 is phosphorylated. 10 / 13
| 11 2

sparser
"Additionally, ERK1/2 can inhibit the phosphorylation of USP11 and thus downregulate the level of cytoplasmic p21, which can play an oncogenic and pro-cancer role in BC. xref However, whether USP11 can inhibit autophagy through the ERK/mTOR pathway and play a key role in BC development needs further exploration."

sparser
"Intriguingly, the activity of USP11 could be phosphorylated by FASN-induced PI3K-S6 kinase signaling, and phosphorylated USP11 further enhances its interaction with eIF4B and thereby promoting oncogenic translation [ xref ], implying that the activity of deubiquitinase USP11 is also activated by the kinase and enriches the complex regulatory network of USP11."

sparser
"p70-S6Kinase phosphorylated USP11 regulates eIF4B stability."

sparser
"Similarly, the Gartenhaus lab using both pharmacologic and genetic approaches, reported that FASN induced S6Kinase signaling to phosphorylate USP11 enhancing its interaction and stability of eIF4B in DLBCL consequently promoting oncogenic translation xref )."

sparser
"It also important to note that the activity of phosphorylated USP11, under experimental conditions, was more or less equivalent to the wild-type protein revealing phosphorylation plays an important role in stabilizing DUBs substrate interaction( xref )."

sparser
"USP11 deubiquitinates and stabilizes the translation initiation factor EIF4B to promote EIF4B-dependent oncogenic translation, thus phosphorylating USP11 enhances the stability and abundance of EIF4B, which ultimately facilitates the occurrence of lymphoma."

sparser
"We found that TGF β -1 has no effect on the expression of USP11, while it increases tyrosine phosphorylation of USP11 in lung fibroblast cells (data not shown)."

sparser
"Bandish Kapadia et al. [ xref ] found that phosphorylation of USP11 stabilizes and deubiquitinates transcription factor EIF4B and further promotes the progression and malignancy of diffuse large B-cell lymphoma, USP11 is phosphorylated by FASN-induced S6 kinase, which also suggests that the status of lymphoma is affected by altered lipid metabolism (Fig. xref )."

sparser
"Employing both pharmacological and genetic approaches, we establish that FASN-induced PI3K-S6Kinase signaling phosphorylates USP11 enhancing its interaction with eIF4B and thereby promoting oncogenic translation."

sparser
"To examine whether USP11 is indeed S6Kinase substrate in tissue culture, we overexpressed USP11 and assessed the phosphorylation of USP11 using phospho-specific antibody that recognizes the optimal pSer substrate."
USP11 is ubiquitinated.
| 1 1
USP11 is ubiquitinated. 2 / 2
| 1 1

reach
"We applied the biotin–avidin system and demonstrated that DMB directly bound to USP11 and inhibited USP11 deubiquitination, resulting in GREM1 degradation."

sparser
"In this assay, we found that only USP11 full-length wild type abrogated ubiquitination of Flag-IκBα ( xref )."
USP11 is acetylated.
1 | 1
USP11 is acetylated on K245. 1 / 2
1 | 1

sparser
"Chunaram Choudhary et al. found that USP11 might be acetylated at the Lys 245 site via extensive acetylation and mass spectrometry analysis [ xref ], the specific experimental basis of which needs further validation."
USP11 affects USP11
| 13
USP11 decreases the amount of USP11.
| 4
USP11 decreases the amount of USP11. 4 / 6
| 4

reach
"Thereby, inhibiting USP11 function, via either blocking USP11 activity or lowering USP11 protein level, may serve as an effective therapeutic strategy against AD."

reach
"To investigate whether USP11 modulates LPS induced signaling, USP11 expression was down-regulated by usp11 shRNA transfection."

reach
"Similarly, USP11 KD decreased levels of the c-Myc target genes MCM3, CDC6, CCNE2, MKI67, and CDK4 in Rv1 (SI Appendix, Fig. S2L), VCaP (SI Appendix, Fig. S2M), C4-2 (SI Appendix, Fig. S2N), and DU145 (SI Appendix, Fig. S2O) cells.To evaluate the potential relevance of these in vitro findings to PCa tissues, we analyzed and correlated USP11 transcript levels with those of AR or c-Myc in human PCa datasets."

reach
"To investigate whether down-regulation of USP11 exhibits protective effects against LPS induced lung injury, USP11 levels in the mouse lungs were down-regulated by usp11 shRNA in a lentiviral vector delivery system (XREF_FIG d)."
USP11 deubiquitinates USP11.
| 3
USP11 deubiquitinates USP11. 3 / 3
| 3

reach
"Since USP11 is known to auto-deubiquitylate , it is plausible that ectopic USP11 could deubiquitylate endogenous USP11 leading to increased stability."

reach
"Taken together, the data above confirmed that USP11 inhibits Sirt3 degradation through deubiquitinating Sirt3.3.6 USP11 ameliorates ferroptosis, thus relieving IVDD by increasing Sirt3."

reach
"Several lines of evidence point towards a critical role for USP11 in regulating BRCA2 stability : USP11 interacts and co-purifies with BRCA2, USP11 deubiquitylates BRCA2, USP11 depletion sensitises cells to DNA damaging agents and finally, mitomycin C (MMC) regulates the stability of BRCA2 in a USP11 dependent manner [XREF_BIBR]."
USP11 activates USP11.
| 2
USP11 activates USP11. 2 / 3
| 2

reach
"Furthermore, we revealed that ERK1/2 phosphorylated USP11 at the Ser905 site, which promoted the cytoplasmic localization of USP11."

reach
"Hence, the methylation of USP11 appears to direct USP11 activity towards a particular stage of HR repair, namely DNA end-resection and RPA loading, rather than the formation of the BRCA1–PABL2–BRCA2 complex."
USP11 inhibits USP11.
| 2
USP11 inhibits USP11. 2 / 2
| 2

reach
"This provides us a new perspective for future studies.In conclusion, in our present study, we found that IsoLiPro can lower USP11 protein levels both in vivo and in vitro, mainly through modulating protein degradation without impacting directly the USP11 enzyme activity, and consequently ameliorate AD pathologies in transgenic AD animal model."

reach
"Furthermore, there is a rapid loss of USP11 upon DNA damage induction, specifically in G1 phase (XREF_FIG and XREF_FIG)."
USP11 increases the amount of USP11.
| 2
USP11 increases the amount of USP11. 2 / 2
| 2

reach
"Taken together, we identified a feedback loop regulation between USP11 and NOTCH1, in which NOTCH1 transcriptionally activates USP11 expression and, in turn, USP11 controls NOTCH1 protein levels via deubiquitination.Here, we identified a regulatory feedback loop between NOTCH1 and the USP11 deubiquitinase in T-cell acute lymphoblastic leukemia (T-ALL)."

reach
"Our qPCR and Western blots showed that mRNA and protein levels of USP11 were significantly decreased by USP11 siRNAs in human SSCs (Fig. S4B–D)."
USP11 affects RAE1
3 1 | 10 2
USP11 binds RAE1.
3 | 4 2
3 | 4 2

sparser
"Since knock-down of SPRYD3 or PAM in U2OS cells had no significant effect on cell proliferation, we chose to focus on the interaction between USP11 and its substrate RAE1."

reach
"Independent reciprocal IPs using Flag- and hemagglutinin (HA)-tagged versions of the proteins transiently expressed in 293T cells, confirmed the interaction between USP11, RAE1, SPRYD3 and KCTD6 (XREF_FIG)."

reach
"Since knock-down of SPRYD3 or PAM in U2OS cells had no significant effect on cell proliferation, we chose to focus on the interaction between USP11 and its substrate RAE1."

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."

sparser
"Anna Stockum et al. [ xref ] found that USP11 interacts with RAE1 and facilitates the proliferation of osteosarcoma cell U2OS via deubiquitinating RAE1."
USP11 deubiquitinates RAE1.
1 | 2
USP11 deubiquitinates RAE1. 2 / 3
1 | 2

reach
"USP11 deubiquitinates RAE1 and plays a key role in bipolar spindle formation."

reach
"We show here that deubiquitination of RAE1 by USP11 does not regulate RAE1 protein levels nor the SAC."
USP11 ubiquitinates RAE1.
| 2
USP11 leads to the ubiquitination of RAE1. 2 / 2
| 2

reach
"USP11 modulates RAE1 ubiquitination at the mitotic spindle."

reach
"We speculated that ubiquitination of RAE1, modulated by USP11, could possibly regulate its function at the mitotic spindle."
USP11 activates RAE1.
| 2
USP11 activates RAE1. 2 / 2
| 2

reach
"We show here for the first time that upon USP11 knock-down a ubiquitinated form of RAE1 is present on the mitotic spindle resulting in a phenotype similar to RAE1 ablation, which can be partially restored by combined NuMA and USP11 knock-down."

reach
"As USP11 does not regulate the RAE1 protein levels (XREF_FIG) we wondered whether USP11 modulates the association of RAE1 with the mitotic spindle."
USP11 affects TGFBR2
1 | 14
USP11 deubiquitinates TGFBR2.
1 | 9
USP11 deubiquitinates TGFBR2. 7 / 8
1 | 7

reach
"TGFBR2 is deubiquitinated by USP11 to maintain the TGF-β signal pathway (Jacko et al., 2016) and the glycosylation of TGFBR2 enhances the radio-resistance and BC cell stemness (Sun et al., 2021); therefore, maintaining a normal TGF-β pathway is essential for cancer cell control."

reach
"The novel finding in this study is that USP11 de-ubiquitinates and stabilizes TbetaRII."

reach
"We demonstrate that knockdown of USP11 increases the ubiquitination of TbetaRII, whereas overexpression of USP11 greatly decreases ubiquitination of TbetaRII."

reach
"USP11 de-ubiquitinates and stabilizes TbetaRII."

reach
"Together, these data suggest that deubiquitination of TGFBR2 by USP11 effectively spares TGFBR2 from proteasomal degradation to promote EMT and metastasis."

reach
"We conducted Co-IP experiments, which revealed that Usp11 was able to interact with Tgfbr2, and inhibition of Usp11 increased the ubiquitination of Tgfbr2."

reach
"Usp11 promotes the development of renal fibrosis by deubiquitinating Tgfbr2, reducing Tgfbr2 ubiquitination degradation, and then facilitating the activation of downstream senescent signaling pathway."
Modified USP11 leads to the deubiquitination of TGFBR2. 2 / 2
| 2

reach
"Overexpression of USP11 reduces TbetaRII ubiquitination and increases TbetaRII stabilization, thereby elevating phosphorylation of SMAD2/3 and the ultimate expression of FN and SMA."

reach
"We demonstrate that knockdown of USP11 increases the ubiquitination of TbetaRII, whereas overexpression of USP11 greatly decreases ubiquitination of TbetaRII."
USP11 ubiquitinates TGFBR2.
| 2
USP11 leads to the ubiquitination of TGFBR2. 2 / 2
| 2

reach
"As shown in XREF_FIG, USP11 shRNA increased TbetaRII ubiquitination, whereas the level of ubiquitination was reduced by overexpression of USP11-HA (XREF_FIG)."

reach
"Inhibition or knockdown of USP11 increases poly-ubiquitination of TbetaRII, thereby reducing TbetaRII stability and impairing TGFbeta-1 signaling in lung fibroblast cells (XREF_FIG)."
USP11 activates TGFBR2.
| 2
USP11 activates TGFBR2. 2 / 2
| 2

reach
"Inhibition of USP11 promotes TbetaRII proteasomal degradation, suggesting that USP11 is a pro fibrotic DUB."

reach
"To investigate whether USP11 promotes TbetaRII stability through de-ubiquitinating TbetaRII, USP11 was downregulated by USP11 shRNA lentivirus infection prior to in vivo ubiquitination assay."
USP11 increases the amount of TGFBR2.
| 1
Modified USP11 increases the amount of TGFBR2. 1 / 1
| 1

reach
"Next, we determined whether overexpression of USP11 with an HA tag (USP11-HA) in MRC5 cells would enhance the expression and activation of TbetaRII."
USP11 affects TBX19
| 12 3
USP11 deubiquitinates TBX19.
| 7
USP11 deubiquitinates TBX19. 7 / 7
| 7

reach
"In this study, we identified two potential inhibitors targeting the functional domain of USP11, which effectively promote the ubiquitination and degradation of TPIT, thereby suppressing ACTH secretion."

reach
"Experimental data suggest that USP11 promotes the deubiquitination of the key transcription factor TPIT in these PitNETs, stabilizing its protein and thereby enhancing POMC transcription and ACTH secretion."

reach
"However, the specific roles and mechanisms by which the ubiquitin-proteasome system contributes to gender differences in the pathogenesis of ACTH PitNETs remain unexamined.In this study, we found that USP11 promotes the deubiquitination of TPIT, enhancing POMC transcription and ACTH secretion, thereby increasing susceptibility to Cushing’s disease in women."

reach
"USP11 deubiquitinates TPIT."

reach
"Ubiquitination assays showed that USP11, when missing the USP domain but retaining the DUSP domain, was unable to deubiquitinate TPIT (Fig. 4E)."

reach
"Overall, our findings indicate that USP11 interacts with and reduces the ubiquitination of TPIT via its USP domain."

reach
"This study demonstrates that USP11 promotes the deubiquitination of TPIT, resulting in enhanced ACTH secretion and an increased risk of Cushing’s Disease in women."
USP11 binds TBX19.
| 1 3
| 1 3

sparser
"USP11 directly interacts with the transcription factor TPIT."

sparser
"The interaction between USP11 and TPIT was further validated by Co-IP in HEK-293T cells, where USP11 was shown to interact with TPIT."

sparser
"Thus, these results suggest that USP11 interacts directly with the transcription factor TPIT."

reach
"The interaction between USP11 and TPIT was further validated by Co-IP in HEK-293T cells, where USP11 was shown to interact with TPIT."
USP11 increases the amount of TBX19.
| 2
USP11 increases the amount of TBX19. 2 / 2
| 2

reach
"The results showed that USP11 overexpression increased TPIT protein levels in both cell lines (Fig. 5A)."

reach
"Additionally, qPCR analysis indicated that USP11 enhanced the Pomc transcription without affecting the transcription of Tpit in AtT-20 cells (Fig. 2A, Supplementary Fig. 2A)."
USP11 activates TBX19.
| 2
USP11 activates TBX19. 2 / 2
| 2

reach
"Cycloheximide (CHX) chase assays further revealed that USP11 overexpression prolonged the half-life of TPIT protein in both HEK-293T and AtT-20 cells (Fig. 5C-D)."

reach
"Additionally, knockdown of USP11 decreased the half-life of TPIT in these cells (Fig. 5E-F)."
USP11 affects Neoplasms
| 13
USP11 activates Neoplasms.
| 8
| 8

reach
"Future work is needed to determine whether USP11-mediated protein–protein interaction may also regulate AR and c-Myc independent of its catalytic activity.In summary, we reveal a tumor-promoting role for USP11 in aggressive PCa through upregulation of AR and c-Myc activities."

reach
"The E2F1/USP11 positive feedback loop can facilitate HCC cell proliferation and metastasis, and can promote tumor growth in vivo, by activating the ERK/mTOR pathway to inhibit autophagy (31)."

reach
"Our study reveals a tumor-promoting role of USP11 in various PCa cells, regardless of PTEN status."

reach
"In colorectal cancer, USP11 promotes tumor growth and metastasis via the ERK/MAPK pathway by stabilizing PPP1CA [18]."

reach
"USP11 promoted tumor growth and metastasis in CRC via the ERK/MAPK pathway by stabilizing PPP1CA, suggesting USP11 is a potential prognostic marker."

reach
"Conversely, sh-PPP1CA decreased the xenograft tumor growth caused by USP11 overexpression (Fig. 7d)."

reach
"USP11 promotes tumor growth and metastasis in CRC via the ERK/MAPK pathway by stabilizing PPP1CA[66,67]."

reach
"Our research findings confirm that USP11 promotes tumor lipogenesis and progression by upregulating SREBF1."
USP11 inhibits Neoplasms.
| 5
| 5

reach
"Furthermore, in vivo IHC staining showed that overexpression or knockdown USP11 could also enhance or decrease p-ERK1/2 staining in xenograft tumors generated by injecting USP11 overexpression or knockdown cells."

reach
"Studies have shown that USP11 can both inhibit tumor (glioma) and promote tumor (breast cancer)."

reach
"USP11 ablation inhibited tumor growth, suggesting a critical role for USP11 in T-ALL maintenance (fig."

reach
"USP11 KD significantly inhibited growth of xenograft tumors formed by Rv1, C4-2, or PC3 cells (Fig. 1 L and M and SI Appendix, Fig. S1 E and F)."

reach
"Those findings suggest that USP11 effects on PTEN may inhibit tumor initiation at early stages of prostate tumorigenesis."
USP11 affects H2AX
5 1 | 7 1
USP11 binds H2AX.
5 | 1 1
5 | 1 1

sparser
"USP11 can physically interact with H2AX and localises to sites of DNA damage, reinforcing its role in DSB repair signalling, while its activity against H2A-Ub is proposed to be at K119/K120 in H2A, rather than the RNF168/53BP1-relevant H2AK13/15 [ xref ] ( xref )."

reach
"Mechanistically, USP11 interacts with and deubiquitinates γH2AX [33]."
USP11 deubiquitinates H2AX.
1 | 6
USP11 deubiquitinates H2AX. 6 / 7
1 | 6

reach
"Mechanistically, USP11 interacts with and deubiquitinates γH2AX [33]."

reach
"USP11 deubiquitinates SPRTN for the repair of DNA–protein crosslinks and γH2AX for the double-strand-break repair (55, 56)."

reach
"USP11 acts in both H2AK119 and H2BK120 deubiquitination and specifically deubiquitinates the histone variant γH2AX, which is key in homologous recombination , although no epigenomic data is available for the activity of these human proteins."

reach
"USP11 deubiquitinates H2AX, opposing the ubiquitinating activity of the RNF8 and RNF168 complex."

reach
"USP11 also functions in DSB repair, wherein USP11 deubiquitinates H2AX to regulate the recruitment of RAD51 and 53BP1 to damage foci."

reach
H2AX can be ubiquitylated by RNF8/RNF168, but deubiquitylated by USP11 [ 126 ]."
CDH1 affects USP11
| 7 8
| 7 8

sparser
"In addition, we detected the interaction between USP11 and E-cadherin by immunoprecipitation assay using Flag antibody in Flag-USP11 overexpressed HEK293 T cells or T47D cells ( xref , B and C )."

reach
"We discovered that USP11 is bound to E-cadherin through its C-terminal region."

sparser
"Since E-cadherin is a transmembrane protein holding a cytoplasmic domain for signal transduction and interacting with intracellular proteins, such as p120 and β-catenin ( xref , xref ), we wondered whether USP11 bound to the E-cadherin cytoplasmic region."

sparser
"To further confirm the interaction between USP11 and E-cadherin, we generated GST fusion proteins containing N-terminal (residues 1–300 amino acids, termed GST-USP11-N) and C-terminal (residues 301–963 amino acids, termed GST-USP11-C) sequences of USP11 ( xref C )."

reach
"USP11 binds to E-cadherin."

reach
"In addition, we detected the interaction between USP11 and E-cadherin by immunoprecipitation assay using Flag antibody in Flag-USP11 overexpressed HEK293 T cells or T47D cells (Fig. S3, B and C)."

reach
"To further confirm the interaction between USP11 and E-cadherin, we generated GST fusion proteins containing N-terminal (residues 1–300 amino acids, termed GST-USP11-N) and C-terminal (residues 301–963 amino acids, termed GST-USP11-C) sequences of USP11 (Fig. 3C)."

reach
"Together, these results indicate that USP11 binds to E-cadherin and that this interaction is mainly mediated by the C-terminal region of USP11."

reach
"We revealed that USP11 bound to and deubiquitinated E-cadherin."

sparser
"USP11 binds to E-cadherin."
| 14
USP11 activates Carcinogenesis.
| 8

reach
"In summary, in vitro assays indicated that USP11 enhances CRC cell proliferation, migration, and invasion, but showed no effect on apoptosis.3.3 USP11 enhances tumorigenesis and liver metastasis of CRC in vivo."

reach
"Furthermore, Heeyoung Yang et al. [30] identified that USP11 promotes the proliferation, tumorigenesis, and sorafenib-resistance of hepatocellular carcinoma via negatively regulating KLF4, which was known as a tumor suppressor factor in previous researches."

reach
"The findings that USP11 stimulates tumorigenesis have been exclusively obtained from artificial overexpression or knockdown of USP11 in various cancer cell lines, in which multiple oncogenic proteins have been identified as its substrates."

reach
"Our functional results provide evidence for the crosstalk between KLF4 and USP11 in hepatic diseases; in particular, they show how USP11 enhances HCC tumorigenesis and steatosis through KLF4 inhibition."

reach
"It is not surprising that USP11, a deubiquitinase widely expressed in multiple tissues or cell lineages, has many substrates including oncogenic proteins; however, it remains to be investigated whether, under physiological conditions, USP11 promotes tumorigenesis through deubiquitinating those substrates in vivo."

reach
"USP11 promotes lipogenesis and tumorigenesis by regulating SREBF1 stability in hepatocellular carcinoma."

reach
"Collectively, these findings suggest that USP11, as KLF4-binding partner, is an important mediator of hepatic tumorigenesis that functions via degradation of KLF4 and is a potential treatment target for liver diseases."

reach
"Additionally, there is an urgent need to develop effective inhibitors targeting the USP11-SREBF1 axis and evaluate their impact on HCC proliferation and metastasis in preclinical and clinical studies.In conclusion, our study highlights that USP11 enhances lipogenesis and tumorigenesis in HCC by regulating SREBF1 stability."
USP11 inhibits Carcinogenesis.
| 6

reach
"Interestingly, depletion of another BRCA1-interacting protein, BRCA2, results in defects of DNA repair but not that of differentiation in mammary cells (14), which suggests that not all intrinsic DNA repair defects induced by deficiency of BRCA1-interacting proteins promote or are associated with aberrant differentiation.In this study, we discovered that loss of USP11 reduced the expression of E-cadherin and induced DNA damage in MECs and that overexpression of USP11 promoted luminal differentiation, enhanced DNA damage repair, and suppressed tumorigenesis."

reach
"Notably, other than a finding that loss of one allele of Usp11 in male mice destabilizes PTEN to promote mouse embryonic fibroblast (MEF) and prostate epithelial cell proliferation and tumorigenesis (31), all the findings on the role of USP11 in tumorigenesis and cell differentiation were achieved from cell culture-based systems."

reach
"In sum, these results indicate that Usp11 prevents E-cadherin from degradation and promotes DNA damage repair to suppress tumorigenesis, which is dependent on its deubiquitinase activity."

reach
"Altogether, these results indicate that USP11 is a KLF4‐specific deubiquitinase that promotes KLF4 degradation.3.3 USP11 mediates cancer cell proliferation and tumorigenesis by promoting KLF4 instability."

reach
"Although most results on the tumor suppressive role of USP11 were also derived from in vitro cell culture systems, a finding that the loss of one allele of Usp11 in male mice destabilizes PTEN to promote prostate epithelial cell tumorigenesis provides genetic evidence that USP11 suppresses prostate tumorigenesis in males (29)."

reach
"Interestingly, USP11 may also inhibit breast cancer cell proliferation through deubiquitinating PTEN (31); however, no genetic evidence indicates that USP11 suppresses mammary tumorigenesis."
NFKBIA affects USP11
| 4 9
| 4 9

sparser
"In conclusion, our data provide evidence of the physical and functional interaction between IκBα and USP11."

sparser
"To determine whether the binding of USP11 with IκBα is required for its deubiquitinase activity toward IκBα, we co-transfected Flag-IκBα with Myc-USP11 full-length, Myc-USP11-NT or Myc-USP-CT into HEK 293T cells."

reach
"The association between USP11 and IkappaBalpha were also confirmed by co-immunoprecipitation of endogenous IkappaBalpha and USP11 in HeLa cells (XREF_FIG)."

reach
"To determine whether the binding of USP11 with IkappaBalpha is required for its deubiquitinase activity toward IkappaBalpha, we co-transfected Flag-IkappaBalpha with Myc-USP11 full-length, Myc-USP11-NT or Myc-USP-CT into HEK 293T cells."

reach
"These results suggest that binding of USP11 with IkappaBalpha is required for USP11 mediated IkappaBalpha deubiquitination."

reach
"In conclusion, our data provide evidence of the physical and functional interaction between IkappaBalpha and USP11."

sparser
"We present evidence that USP11 is constitutively associated with IκBα and attenuates IκBα degradation to negatively regulate TNFα-induced NF-κB activation."

sparser
"These results suggest that binding of USP11 with IκBα is required for USP11-mediated IκBα deubiquitination."

sparser
"However, in our co-transfection assay, we found that USP11 but not USP15 is associated with IκBα."

sparser
"In addition, we found that only USP domain failed to mediate the association of USP11 with IκBα and deubiquitination of IκBα."
E2F1 affects USP11
1 | 6 7
E2F1 binds USP11.
1 | 4 7
1 | 4 7

sparser
"Additionally, it has also been reported that GSK3β increases the interaction of E2F1 with USP11, which results in the deubiquitination and stabilization of E2F1, which in turn activates PEG10 expression to promote proliferation in A549 [ xref ]."

sparser
"Qiao’s team showed that Ubiquitin specific peptidase 11 (USP11) bound to E2F1 and promoted its stability by deubiquitination, and E2F1/USP11 formed a feedback loop to impede HCC tumor growth by inhibiting autophagy via activating ERK/mTOR pathway [ xref ]."

reach
"Upon nuclear translocation, USP11 binds to E2F1 and inhibits the ubiquitin-mediated degradation of E2F1, thereby enhancing the transcriptional expression of RAD51AP1."

reach
"Phosphorylated E2F1 binds to ubiquitin specific peptidase 11, leading to reduced degradation of E2F1 due to deubiquitination."

sparser
"In addition, serine phosphorylation of E2F1 by GSK3 in lung epithelial cells increased the binding of E2F1 to USP11 and reduced the degradation of E2F1 in the nucleus [ 36 ]."

reach
"Qiao’s team showed that Ubiquitin specific peptidase 11 (USP11) bound to E2F1 and promoted its stability by deubiquitination, and E2F1/USP11 formed a feedback loop to impede HCC tumor growth by inhibiting autophagy via activating ERK/mTOR pathway [17]."

reach
"Results from co-immunoprecipitation and ubiquitination assays demonstrated that USP11 interacted with E2F1 and maintained E2F1 protein stability by removing its ubiquitin."

sparser
"To explore the interaction between USP11 and E2F1, a Co-IP assay was carried out."

sparser
"Phosphorylated E2F1 binds to ubiquitin specific peptidase 11, leading to reduced degradation of E2F1 due to deubiquitination."

sparser
"In this report, we systematically showed that USP11 interacts with E2F1 and maintains its stability by removing its ubiquitin."
E2F1 increases the amount of USP11.
| 2
E2F1 increases the amount of USP11. 2 / 2
| 2

reach
"Lijun Qiao et al. [87] found that USP11 stabilized E2F1 which regulated USP11 transcription conversely, and the E2F1/USP11 formed a positive feedback loop to promote the proliferation and migration of HCC cells."

reach
"Further, Qiao L, et al. reported that E2F1 increases USP11 transcription."
Mgl-1 affects USP11
| 13
| 13

reach
"In this study, we demonstrated a direct interaction between USP11 and Mgl-1."

reach
"We next evaluated the endogenous interaction between Mgl-1 and USP11."

reach
"The results demonstrate both in vitro and in vivo interactions between Mgl-1 and USP11."

reach
"These data indicate that USP11 interacts with Mgl-1, and Mgl-1 has multiple binding sites to USP11."

reach
"In the present study, we identified the interaction between USP11 and Mgl-1."

reach
"Mgl-1 interacts with USP11."

reach
"We next investigated the functional consequence of interaction between Mgl-1 and USP11."

reach
"To address whether RanBPM can mediate interaction between USP11 and Mgl-1, we used RanBPM knockdown cells."

reach
"To reconfirm the interaction between Mgl-1 and USP11, we investigated the interaction between Mgl-1 and USP11 in a Glutathione S-transferase (GST) pull-down in vitro assay."

reach
"Immunoprecipitation assay was performed with an anti-USP11 antibody and the result showed that interaction between USP11 and Mgl-1 was decreased in knockdown of RanBPM."
USP11 affects RANBP9
4 1 | 3 5
4 1 | 3 5

reach
"Furthermore, the association between USP11 and RanBPM in vivo was confirmed not only by yeast two-hybrid assay but also by co-immunoprecipitation assays using exogenously expressed USP11 and RanBPM."

sparser
"RanBPM is associated with USP11, which is generally involved in preventing ubiquitination of targeted proteins [ xref ]."

reach
"By immunofluorescence assay, USP11 primarily was localized in the nucleus of non dividing cells, suggesting an association between USP11 and RanBPM in the nucleus."

sparser
"Protein USP11 binds specifically to protein RanBPM and inhibits its ubiquitination and degradation [ 33 ]."

sparser
"It has been demonstrated that USP11 interacts with RanBPM, a Ran-binding protein, which is required for correct microtubule nucleation (Ideguchi et al, 2002) ."

reach
"Protein USP11 binds specifically to protein RanBPM and inhibits its ubiquitination and degradation [ 33 ]."

sparser
"Interestingly, RanBPM is associated with USP11 a deubiquitinating enzyme (DUB) which is generally involved in preventing ubiquitination of targeted proteins [16] ."

sparser
"Interestingly, RanBP9 is associated with USP11, a DUB that prevents ubiquitination of targeted proteins. xref Therefore, we speculate that RanBP9 may promote deubiquitination of TSSC3 by recruiting USP11 to TSSC3."
USP11 affects PALB2
2 1 | 9 1
USP11 deubiquitinates PALB2.
1 | 8
USP11 deubiquitinates PALB2. 8 / 9
1 | 8

reach
"If USP11 antagonizes PALB2 ubiquitylation by CRL3-KEAP1, then removal of KEAP1 (or CUL3) should reverse the phenotypes imparted by loss of USP11."

reach
"Strikingly, the centromere histone variant CENP-A enables the activation of HR in G1 by mediating the recruitment of the deubiquitinase USP11, which subsequently enables the formation of the RAD51–BRCA1–BRCA2 HR complex by deubiquitinating PALB2 (62) (Figure 2C)."

reach
"Since recombinant USP11 can de-ubiquitylate PALB2 (1-103) in vitro (XREF_FIG), these results suggest that USP11 promotes the assembly of the BRCA1, PALB2, and BRCA2 complex by reversing the inhibitory ubiquitylation on the PALB2 Lys20/25/30 residues."

reach
"PALB2 ubiquitylation can be reversed by USP11 deubiquitylase, restoring formation of BRCA1-PALB2-BRCA2 complex ( Fig. 4 B)."

reach
"USP11 (Ubiquitin specific peptidase 11) deubiquitinates PALB2 ubiquitination to promote HR repair."

reach
"USP11 deubiquitinates PALB2 and promotes BRCA1, PALB2, and BRCA2 complex formation."

reach
"These mechanisms might be of therapeutic importance in cancer, because defective HR renders cells susceptible to inhibition of base excision repair (BER) mediated by poly (ADP-ribose) polymerase 1 (PARP1) XREF_BIBR - XREF_BIBR : the deubiquitylating enzyme (DUB) ubiquitin carboxyl-terminal hydrolase 11 (USP11) deubiquitylates partner and localizer of BRCA2 (PALB2) during S and G2 phases following DNA damage, allowing the formation of the BRCA1, PALB2, and BRCA2 complex and HR repair to advance in these phases of the cell cycle 64."

reach
"For example, USP11 recruits BRCA1 to chromatin by deubiquitinating PALB2 (partner and localizer of BRCA2) in a cell cycle-dependent manner or stabilizing MYCN in neuroblastoma ."
USP11 binds PALB2.
2 | 1 1
2 | 1 1

reach
"Conversely, PALB2 also associates with the Deubiquitinase (DUB) USP11 which can antagonize RNF168 ubiquitylation at chromatin and promote PALB2 interaction with BRCA1, which is essential for proper HR to occur at DNA damage sites ."

sparser
"Conversely, PALB2 also associates with the Deubiquitinase (DUB) USP11 which can antagonize RNF168 ubiquitylation at chromatin and promote PALB2 interaction with BRCA1, which is essential for proper HR to occur at DNA damage sites xref ."
| 6 7
| 1 5

reach
"USP11 was able to bind and deubiquitinate NP, thereby antagonizing viral replication [XREF_BIBR]."

sparser
"USP11 was able to bind and deubiquitinate NP, thereby antagonizing viral replication [ xref ]."

sparser
"The experimental protocol was as described above. (D) The interaction between USP11 and NP."
| 3

sparser
"The co-immunoprecipitation results showed that USP11 interacts with PB2, PA and NP, respectively."

sparser
"USP11 specifically interacts with PB2, PA and NP. (A) The interaction of USP11 with singly expressed viral proteins."

sparser
"Conversely, cellular deubiquitinase USP11 can interact with PB2, PA and NP, and thereby affect the function of RNP complex during RNA replication."
USP11 ubiquitinates Nucleoproteins.
| 2 2
| 2 2

reach
"For example, Liao et al. indicated that the ubiquitination and deubiquitination of NP by USP11 probably regulates influenza A viral genome replication [68]."

reach
"Recently, a cellular deubiquitinase, USP11, was found to inhibit the RNA replication of influenza A virus by specifically deubiquitinating NP XREF_BIBR."

sparser
"For example, Liao et al. indicated that the ubiquitination and deubiquitination of NP by USP11 probably regulates influenza A viral genome replication [68]."

sparser
"For example, Liao et al. indicated that the ubiquitination and deubiquitination of NP by USP11 probably regulates influenza A viral genome replication [68]."
USP11 deubiquitinates Nucleoproteins.
| 3
USP11 deubiquitinates Nucleoproteins. 3 / 3
| 3

reach
"These results combined suggest that USP11 inhibits viral RNA replication through deubiquitinating NP."

reach
"(B) Deubiquitination of NP by cellular USP11 may lower its binding affinity to cRNA."

reach
"The result showed that both USP10 and USP11 specifically co-precipitated with NP-HA (lanes 1, 3 and 4, lower panel), consistent with the published result, and NP could be deubiquitinated by only USP11 but not USP10 (lanes 3 and 4, upper panel)."
USP11 affects HOXC5
| 7 6
USP11 binds HOXC5.
| 5 6
| 5 6

reach
"Double immunofluorescence, Co-immunoprecipitation (Co-IP), and molecular docking demonstrated an interaction between USP11 and HOXC5 in human SSCs."

reach
"Furthermore, at the molecular level, molecular docking elucidated an interaction between USP11 and HOXC5."

reach
"Considered together, these results indicate a significant interaction between USP11 and HOXC5 in human SSCs."

reach
"Our Co-IP and molecular docking experiments further demonstrated the interaction between HOXC5 and USP11 in human SSCs.WNT signaling pathway constitutes a highly complex biological regulatory network, including WNT/β-catenin pathway, WNT-PCP pathway, and WNT-Ca pathway [30]."

reach
"We have identified HOXC5 as a target of USP11, and we revealed a mutual interaction between USP11 and HOXC5 in human SSCs (Fig. 10)."

sparser
"Double immunofluorescence, Co-immunoprecipitation (Co-IP), and molecular docking demonstrated an interaction between USP11 and HOXC5 in human SSCs."

sparser
"Furthermore, at the molecular level, molecular docking elucidated an interaction between USP11 and HOXC5."

sparser
"Considered together, these results indicate a significant interaction between USP11 and HOXC5 in human SSCs."

sparser
"Significantly, we found that USP11 could interact with HOXC5 in human SSCs."

sparser
"Our Co-IP and molecular docking experiments further demonstrated the interaction between HOXC5 and USP11 in human SSCs."
USP11 increases the amount of HOXC5.
| 2
USP11 increases the amount of HOXC5. 2 / 2
| 2

reach
"Subsequently, we found that the protein levels of HOXC5 were decreased concomitantly by USP11 silencing."

reach
"48 We have recently reported that ubiquitin-specific peptidase 11 (USP11) upregulates the expression of homeobox C5 (HOXC5) and activates the WNT/β-catenin pathway to promote the proliferation of human SSCs."
USP11 affects CRC
| 13
USP11 activates CRC. 10 / 11
| 11

reach
"USP11 promotes CRC progression by stabilizing the protein phosphatase 1 catalytic subunit alpha (PPP1CA) via deubiquitination."

reach
"These results indicate that USP11 promotes the progression of CRC by increasing CRC cell proliferation and liver metastasis in vivo.3.4 USP11 may interact with PPP1CA."

reach
"To explore how USP11 promotes the progression of CRC, we first transfected HEK293T cells with either Flag–USP11 plasmid or EV plasmid."

reach
"Therefore, we hypothesized that USP11 may promote the progression of CRC by stabilizing PPP1CA.To test our hypothesis, we investigated the potential biochemical interrelationship between USP11 and PPP1CA."

reach
"USP11 is involved in the development and progression of multiple tumors XREF_BIBR - XREF_BIBR, and we have found that USP11 could promote CRC by stabilizing PPP1CA through deubiquitination XREF_BIBR."

reach
"USP11 promoted tumor growth and metastasis in CRC via the ERK/MAPK pathway by stabilizing PPP1CA, suggesting USP11 is a potential prognostic marker."

reach
"Our in vitro and in vivo studies demonstrated that USP11 promotes CRC, and the USP11/PPP1CA/MAPK axis plays an important role in CRC progression."

reach
"Taken together, our data indicate that USP11 positively regulates the ERK/MAPK signaling pathways in a PPP1CA-dependent manner.3.7 PPP1CA is indispensable for USP11-mediated promotion of CRC."

reach
"Sun et al[26] also demonstrated that USP11 promotes the growth and metastasis of CRC via PPP1CA-mediated activation of the ERK/MAPK signaling pathway."

reach
"Additionally, USP11 has been shown to enhance the resistance of CRC cells to 5-fluorouracil treatment, suggesting that it may play a role in drug resistance in CRC."
USP11 bound to PPP1CA activates CRC. 2 / 2
| 2

reach
"The USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway (Sun et al., 2019)."

reach
"Moreover, the USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway."
TGFBR1 affects USP11
1 | 7 5
1 | 7 5

sparser
"USP11 may bind ALK5 and prevent the SMAD7-E3 ligase complex access to ubiquitylate the receptor."

reach
"USP11 interacts with ALK5."

reach
"FLAG-ALK5 interacted with HA-USP11, and this interaction was only slightly enhanced in the presence of over-expressed SMAD7 (XREF_FIG a)."

reach
"However, because USP11 interacts with ALK5 and positively regulates the TGFbeta pathway dependent on its catalytic activity, ALK5 appeared to be a strong candidate for deubiquitylation by USP11."

reach
"USP11 may bind ALK5 and prevent the SMAD7-E3 ligase complex access to ubiquitylate the receptor."

reach
"In the case of USP11, SMAD7 does not appear to act exclusively as a scaffold for as SMAD7 does not appear to mediate the interaction between USP11 and TbetaRI, despite the fact that SMAD7 and USP11 be[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"However, because USP11 interacts with ALK5 and positively regulates the TGFβ pathway dependent on its catalytic activity, ALK5 appeared to be a strong candidate for deubiquitylation by USP11."

reach
"Similarly, USP9x and USP11 interact and deubiquitinate Smad4 and ALK5, respectively, [29, 30] to regulate the transforming growth factor/BMP cell signaling pathways necessary for osteogenic differentiation and bone formation."

sparser
"USP11 interacts with ALK5."

reach
"When bound to ALK5, USP11 deubiquitylates and protects ALK5 from proteasomal degradation resulting in enhanced TGFbeta signalling."
SPRTN affects USP11
4 | 2 7
4 | 2 7

sparser
"To gain insight into the functional relevance of SPRTN-USP11 interaction, we first examined whether USP11 functions in response to DNA damage caused by DPC-inducing agents."

sparser
"We next confirmed SPRTN-USP11 interaction by immunoprecipitation in HEK 293T cells expressing either SFB-USP7, SAMHD1, or SPRTN."

sparser
"We observed a slight increase in SPRTN-USP11 interaction following treatment with etoposide (VP16), a TOP2 crosslinking agent ( xref D , xref ), camptothecin (CPT), TOP1 cross-linking agent, formaldehyde (nonspecific cross-linking agent), and hydroxyurea (non-cross-linking agent) ( xref )."

sparser
"Co-immunoprecipitation (Co-IP) of Myc-USP11 with SFB-SPRTN full-length (FL) or ΔSprT, ΔSH, ΔPIP, ΔUBZ, E112A catalytic inactive, and Y117C (SPRTN mutation identified in RJALS patients) mutant constructs showed that SPRTN-USP11 interaction was lost with deletion of the N-terminal SprT domain of SPRTN ( xref A )."

reach
"VCPIP1 and USP11 interact weakly with SPRTN in co-immunoprecipitating experiments, but show no (VCPIP1) or only weak (USP11) preference for SPRTN-Ub (XREF_SUPPLEMENTARY)."

sparser
"Moreover, we observe SPRTN interaction with USP11 in the absence and upon DNA damage."

sparser
"Based on our observation that SPRTN and USP11 interact ( xref and xref ) and because USP11 is a deubiquitinase ( xref , xref , xref ), we investigated whether SPRTN is a substrate for USP11 deubiquitinase."

reach
"USP11 interacts with SPRTN and cleaves monoubiquitinated SPRTN in cells and invitro."

sparser
"USP11 interacts with SPRTN and cleaves monoubiquitinated SPRTN in cells and in vitro ."
RANBP9 affects USP11
4 1 | 3 5
4 1 | 3 5

reach
"Furthermore, the association between USP11 and RanBPM in vivo was confirmed not only by yeast two-hybrid assay but also by co-immunoprecipitation assays using exogenously expressed USP11 and RanBPM."

sparser
"RanBPM is associated with USP11, which is generally involved in preventing ubiquitination of targeted proteins [ xref ]."

reach
"By immunofluorescence assay, USP11 primarily was localized in the nucleus of non dividing cells, suggesting an association between USP11 and RanBPM in the nucleus."

sparser
"Protein USP11 binds specifically to protein RanBPM and inhibits its ubiquitination and degradation [ 33 ]."

sparser
"It has been demonstrated that USP11 interacts with RanBPM, a Ran-binding protein, which is required for correct microtubule nucleation (Ideguchi et al, 2002) ."

reach
"Protein USP11 binds specifically to protein RanBPM and inhibits its ubiquitination and degradation [ 33 ]."

sparser
"Interestingly, RanBPM is associated with USP11 a deubiquitinating enzyme (DUB) which is generally involved in preventing ubiquitination of targeted proteins [16] ."

sparser
"Interestingly, RanBP9 is associated with USP11, a DUB that prevents ubiquitination of targeted proteins. xref Therefore, we speculate that RanBP9 may promote deubiquitination of TSSC3 by recruiting USP11 to TSSC3."
HOXC5 affects USP11
| 7 6
HOXC5 binds USP11.
| 5 6
| 5 6

reach
"Double immunofluorescence, Co-immunoprecipitation (Co-IP), and molecular docking demonstrated an interaction between USP11 and HOXC5 in human SSCs."

reach
"Furthermore, at the molecular level, molecular docking elucidated an interaction between USP11 and HOXC5."

reach
"Considered together, these results indicate a significant interaction between USP11 and HOXC5 in human SSCs."

reach
"Our Co-IP and molecular docking experiments further demonstrated the interaction between HOXC5 and USP11 in human SSCs.WNT signaling pathway constitutes a highly complex biological regulatory network, including WNT/β-catenin pathway, WNT-PCP pathway, and WNT-Ca pathway [30]."

reach
"We have identified HOXC5 as a target of USP11, and we revealed a mutual interaction between USP11 and HOXC5 in human SSCs (Fig. 10)."

sparser
"Double immunofluorescence, Co-immunoprecipitation (Co-IP), and molecular docking demonstrated an interaction between USP11 and HOXC5 in human SSCs."

sparser
"Furthermore, at the molecular level, molecular docking elucidated an interaction between USP11 and HOXC5."

sparser
"Considered together, these results indicate a significant interaction between USP11 and HOXC5 in human SSCs."

sparser
"Significantly, we found that USP11 could interact with HOXC5 in human SSCs."

sparser
"Our Co-IP and molecular docking experiments further demonstrated the interaction between HOXC5 and USP11 in human SSCs."
HOXC5 inhibits USP11.
| 2
HOXC5 inhibits USP11. 2 / 2
| 2

reach
"Flow cytometry and TUNEL assay revealed that the overexpression of HOXC5 rescued USP11 knockdown-induced apoptosis in human SSCs (Fig. 7H–K)."

reach
"CCK-8 assay indicated that overexpression of HOXC5 attenuated the inhibitory effect of USP11 knockdown on the proliferation of human SSCs (Fig. 7E)."
HEY1 affects USP11
| 13
HEY1 inhibits USP11.
| 8
HEY1 inhibits USP11. 8 / 8
| 8

reach
"We have elucidated the mechanism by which Hey1 represses USP11 promoter activity (XREF_FIG)."

reach
"Thus, Hey1 functions as a transcriptional corepressor in USP11 transcription regulation and a complex crosstalk among transcriptional factors, histone modifiers and DNA methylation is involved in Hey1 mediated repression of USP11."

reach
"Importantly, Hey1 induced repression of USP11 was abrogated partially by mutating either of the first two Sp1 sites and completely by disrupting both (XREF_FIG), suggesting that Hey1 acts through Sp1 binding sites to repress USP11."

reach
"Using luciferase reporter assay, we found that Hey1 repressed the USP11 promoter activity and that the +171/+335 (0.16 K) region of USP11 promoter was responsible for this repression (XREF_FIG)."

reach
"Hey1 represses USP11 to downregulate PML."

reach
"Overexpression of Hey1 in GBM cell lines U87 decreased USP11 mRNA and protein (XREF_FIG)."

reach
"We further showed that USP11 is transcriptionally repressed by the Notch effector Hey1."

reach
"In the reciprocal experiments, Hey1 knockdown in U87 and U251 cells upregulated USP11 mRNA, USP11 protein and PML protein, but not PML mRNA (XREF_FIG)."
HEY1 activates USP11.
| 3
HEY1 activates USP11. 3 / 3
| 3

reach
"These findings support the idea that Hey1 induced USP11 and PML downregulation mediates the chemoresistant effect of Notch."

reach
"Consistent with the regulation of PML protein stability by USP11, Hey1 induced USP11 downregulation resulted in a concomitant reduction of PML protein but not mRNA."

reach
"To explore the mechanism of Hey1 induced USP11 downregulation, we analysed the 5 '-regulatory region of USP11 (XREF_FIG)."
HEY1 decreases the amount of USP11.
| 2
HEY1 decreases the amount of USP11. 2 / 2
| 2

reach
"We show that Notch acts through Hey1 to repress the expression of USP11, a deubiquitinating (DUB) enzyme for PML."

reach
"However, it was recently demonstrated that Notch and Hey1 transcriptionally represses the expression of the PML deubiquitinase USP11, thereby down-regulating PML protein levels."

reach
"The USP11/SREBF1 axis accelerates HCC lipid synthesis and growth in vivo."

reach
"Our research findings confirm that USP11 promotes tumor lipogenesis and progression by upregulating SREBF1."

reach
"Knockdown of USP11 disrupted lipid synthesis in subcutaneous tumors, but overexpression of SREBF1 reversed this effect, as evidenced by measurements of triglycerides and cholesterol in the tumor tissues (Fig. 8D)."

reach
"In summary, these findings suggest that USP11 modulates lipid synthesis, growth, and metastasis in HCC cells via SREBF1."

reach
"USP11 promotes lipogenesis and tumorigenesis by regulating SREBF1 stability in hepatocellular carcinoma."

reach
"Upregulating USP11 promoted the lipogenesis, while these effects could also be reversed by knocking SREBF1 expression in Huh7 cells (Fig. 6C-F)."

reach
"USP11 deficiency inhibits lipogenesis and proliferation of HCC cells in vivo and in vitro."

reach
"Oil Red O staining and Nile red detection methods showed that siRNA knockdown of USP11 reduced lipid synthesis in the HCC-LM3 (Fig. 4A) and HepG2 cells (Fig. S2A), whereas overexpression of USP11 enhanced lipid synthesis (Fig. 4B) in Huh7 cells."

reach
"Additionally, knockdown of USP11 resulted in decreased levels of triglycerides and cholesterol in the HCC-LM3 (Fig. 4C) and HepG2 cells (Fig. S2B), whereas overexpression of USP11 enhanced lipid synthesis (Fig. 4D) in Huh7 cells."

reach
"USP11 accelerates HCC lipogenesis and progression by up-regulating SREBF1."
USP11 affects TCEAL1
8 | 3 1
8 | 3 1

reach
"Here we show that the deubiquitinating enzyme USP11 forms a complex with TCEAL1, a member of the TFIIS (TCEA)-like protein family."

reach
"In neuroblastoma, USP11- and TCEAL1-dependent genes define a gene expression program that is characteristic for mesenchymal tumors, which are described as able to escape from many treatments, suggesting that the USP11/TCEAL1 complex promotes transcription elongation to support a critical oncogenic gene expression program."

reach
"The USP11/TCEAL1 complex promotes transcription elongation to sustain oncogenic gene expression in neuroblastoma."

sparser
"Here we show that the deubiquitinating enzyme USP11 forms a complex with TCEAL1, a member of the TFIIS (TCEA)-like protein family."
USP11 affects PRC1
1 | 5 6
USP11 binds PRC1.
| 6
USP7 binds USP11 and PRC1. 6 / 6
| 6

sparser
"USP7 and USP11 associate with other PRC1 components."

sparser
"USP7 and USP11 are bound to chromatin and form part of the PRC1 complex."

sparser
"To assess whether USP7 and USP11 associate with bona fide PRC1 complexes, nuclear extracts from FDFs ( xref ) and 293T cells (not shown) were subjected to size exclusion chromatography on a Superose 6 10/300 column, and individual fractions were analysed by SDS–PAGE and immunoblotting."

sparser
"Both USP7 and USP11 interact with PRC1 [ xref ], and these USPs might form a complex [ xref ], suggesting possible inter-USP regulation, the implications of which would be interesting for USP biology."

sparser
"In humans, USP7 and USP11 physically interact with members of PRC1 in vivo , such as Mel18, Bmi1 and Ring1."

sparser
"Our data strongly suggest that USP7 and USP11 bind directly to several components of the PRC1 complex, as confirmed using purified recombinant proteins."
USP11 deubiquitinates PRC1.
1 | 3
USP11 deubiquitinates PRC1. 3 / 4
1 | 3

reach
"In certain cancer types, PRC1 has been found to be deubiquitinated by USP7 and USP11 ( Lecona, Narendra, & Reinberg, 2015; Maertens, Messaoudi-Aubert, Elderkin, Hiom, & Peters, 2010 )."

reach
"Lastly, USP7 and USP11 deubiquitinate PRC1, a protein found to contribute to cancer stemness [XREF_BIBR - XREF_BIBR]."

reach
"In some cancer types, PRC1 can be deubiquitinated by USP7, USP11 and USP26 [XREF_BIBR, XREF_BIBR]."
USP11 inhibits PRC1.
| 2
USP11 inhibits PRC1. 2 / 2
| 2

reach
"Maertens and coworkers proposed that here, USP11 was modulating the degradation of these PRC1 subunits, and hence the availability of PRC1 for repression of target genes such as INK4a."

reach
"Examination of the PRC1 regulated INK4a locus found depletion of both USP7 and USP11 resulted in expression of p16 INK4a at the transcript and protein level, and decreased binding of PRC1 members at the INK4a locus as assessed by ChIP."
USP11 affects PGAM5
1 | 8 3
USP11 binds PGAM5.
1 | 4 3
1 | 4 3

sparser
"In this study, we found an interaction between PGAM5 and USP11 where de-ubiquitination enhances this interaction, leading to the stabilization of PGAM5."

sparser
"Through exogenous co-IP experiments, we confirmed the existence of protein interactions between USP11 and PGAM5 (Fig.  xref C)."

sparser
"This finding was solidified through co-IP experiments, which confirmed the protein interaction between PGAM5 and USP11."

reach
"In addition, the USP11/PGAM5 complex promotes breast cancer progression by activating iron death-related proteins, indicating that the synergy between USP11 and PGAM5 may serve as a predictor of disease outcome and provide a new treatment strategy for breast cancer."

reach
"In this study, we found an interaction between PGAM5 and USP11 where de-ubiquitination enhances this interaction, leading to the stabilization of PGAM5."

reach
"Through exogenous co-IP experiments, we confirmed the existence of protein interactions between USP11 and PGAM5 (Fig. 4C)."

reach
"This finding was solidified through co-IP experiments, which confirmed the protein interaction between PGAM5 and USP11."
USP11 increases the amount of PGAM5.
| 2
USP11 increases the amount of PGAM5. 2 / 2
| 2

reach
"In addition, overexpression of wild-type USP11 instead of the catalytic inactivation mutant (C318A) increased PGAM5 protein levels (Fig. 6D)."

reach
"USP11 knockdown by shRNA increased the polyubiquitination level of the PGAM5 protein in MDA-MB-231 cells (Fig. 7C)."
USP11 activates PGAM5.
| 2
USP11 activates PGAM5. 2 / 2
| 2

reach
"USP11 prevents degradation of PGAM5 by deubiquitination."

reach
"Our findings demonstrated that the depletion of USP11 (sh-USP11) accelerated the degradation of PGAM5 in both MCF-7 and MDA-MB-231 cells (Fig. 6A)."
USP11 affects ILF3
2 | 1 8 1
USP11 binds ILF3.
2 | 2 1
2 | 2 1

reach
"Collectively, the present findings indicated that USP11 binded to and deubiquitinated NF90, thereby stabilizing the protein expression level and promoting HCC cell proliferation and metastasis."

reach
"Our previous research has demonstrated that the deubiquitinase USP11 binds to NF90, resulting in its deubiquitination and stabilization."

sparser
"Our previous research has demonstrated that the deubiquitinase USP11 binds to NF90, resulting in its deubiquitination and stabilization."
USP11 deubiquitinates ILF3.
| 4
USP11 deubiquitinates ILF3. 4 / 4
| 4

reach
"Recently, it was shown that, in hepatocellular carcinoma, where high NF90 expression is associated with a poor prognosis, ubiquitin-specific protease 11 (USP11) promotes NF90 de-ubiquitination, thereby stabilizing it [37]."

reach
"The regulation of NF90 deubiquitination by USP11 is crucial for the enhanced proliferation and metastasis of HCC [24]."

reach
"Collectively, the present findings indicated that USP11 binded to and deubiquitinated NF90, thereby stabilizing the protein expression level and promoting HCC cell proliferation and metastasis."

reach
"USP11 may stimulate tumorigenesis by deubiquitinating cIAP2, NONO, NF90, E2F1, or cytoplasmic p21; however, it may also inhibit tumorigenesis through stabilizing PML, Mgl-1, PTEN, ARID1A, or nuclear p21 (29, 30)."
USP11 activates ILF3.
| 1 2
USP11 activates ILF3. 3 / 3
| 1 2

reach
"USP11 promotes colorectal cancer growth and metastasis by stabilizing PPP1CA, activating the ERK/MAPK pathway, and insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) signaling (151), and interacting with nuclear factor 90 (NF90) to promote HCC proliferation and metastasis (152)."

eidos
"Moreover , the effect of USP11 on promoting HCC cells proliferation and metastasis was dependent on NF90 , and USP11 expression was positively correlated with NF90 expression in human HCC tissues , as demonstrated via immunohistochemistry ."

reach
"15 It has been demonstrated that USP11 promotes colorectal cancer and HCC growth and metastasis by stabilizing NF90 and activating the ERK/MAPK signalling pathway."
USP11 affects ERK
| 12
USP11 activates ERK.
| 10
USP11 activates ERK. 8 / 8
| 8

reach
"E2F1/USP11 modulates autophagy by regulating the ERK/mTOR pathway, leading to HCC cell proliferation and metastasis."

reach
"Interestingly, only the ERK/MAPK pathway was activated by high USP11 expression in the present study."

reach
"These results indicated that USP11 could specifically activate the ERK-dependent MAKP signaling pathway.Next, we further explored the roles of PPP1CA in USP11-mediated ERK/MAPK pathway activation in vitro."

reach
"Taken together, our data indicate that USP11 positively regulates the ERK/MAPK signaling pathways in a PPP1CA-dependent manner.3.7 PPP1CA is indispensable for USP11-mediated promotion of CRC."

reach
"The findings of the present study contribute to the search for novel biomarkers related to the RAS/RAF/MAPK pathway, and may provide useful information regarding the best strategy for mCRC treatment and may improve the prognosis of patients with advanced stage CRC.In summary, the present study demonstrated that USP11 activated the ERK/MAPK signaling pathway by stabilizing PPP1CA during the development of CRC."

reach
"USP11 promotes colorectal cancer growth and metastasis by stabilizing PPP1CA, activating the ERK/MAPK pathway, and insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) signaling (151), and interacting with nuclear factor 90 (NF90) to promote HCC proliferation and metastasis (152)."

reach
"15 It has been demonstrated that USP11 promotes colorectal cancer and HCC growth and metastasis by stabilizing NF90 and activating the ERK/MAPK signalling pathway."

reach
"Another study has the same point, namely, that the overexpression of USP11 promotes metastasis of CRC cells both in vitro and in vivo by activating the ERK/MAPK pathway and stabilizing PPP1CA."
USP11 bound to PPP1CA activates ERK. 2 / 2
| 2

reach
"Moreover, the USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway."

reach
"The USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway (Sun et al., 2019)."
USP11 inhibits ERK.
| 2
USP11 inhibits ERK. 2 / 2
| 2

reach
"Moreover, E2F1 and USP11 inhibited autophagy by regulating ERK and mTOR pathway."

reach
"The E2F1 and USP11 positive feedback loop promotes hepatocellular carcinoma metastasis and inhibits autophagy by activating ERK and mTOR pathway."
TCEAL1 affects USP11
8 | 3 1
8 | 3 1

reach
"Here we show that the deubiquitinating enzyme USP11 forms a complex with TCEAL1, a member of the TFIIS (TCEA)-like protein family."

reach
"In neuroblastoma, USP11- and TCEAL1-dependent genes define a gene expression program that is characteristic for mesenchymal tumors, which are described as able to escape from many treatments, suggesting that the USP11/TCEAL1 complex promotes transcription elongation to support a critical oncogenic gene expression program."

reach
"The USP11/TCEAL1 complex promotes transcription elongation to sustain oncogenic gene expression in neuroblastoma."

sparser
"Here we show that the deubiquitinating enzyme USP11 forms a complex with TCEAL1, a member of the TFIIS (TCEA)-like protein family."
SFTPC affects USP11
| 5 7
| 5 7

sparser
"This finding was supported by a Duolink PLA analysis that visualized in situ interactions between endogenous USP11 and SFTPC or SFTPC I73T . Significantly more PLA dots were observed for USP11 and SFTPC I73T than for USP11 and wild-type SFTPC (Figure xref F)."

reach
"In situ interactions between USP11 and SFTPC were confirmed by PLA dots showing where USP11 and SFTPC were immunostained together in the presence of their specific antibodies (Figure 2J; right panel)."

sparser
"In situ interactions between USP11 and SFTPC were confirmed by PLA dots showing where USP11 and SFTPC were immunostained together in the presence of their specific antibodies (Figure xref J; right panel)."

sparser
"The interaction between USP11 and SFTPC and its ubiquitination status was validated by immunoprecipitation and the TUBEs assay."

sparser
"Next, to explain the mechanism by which USP11 regulates the SFTPC protein level, we examined whether USP11 physically associates with SFTPC in vivo by using a co-immunoprecipitation (co-IP) assay with specific antibodies against endogenous USP11 and SFTPC."

reach
"This finding was supported by a Duolink PLA analysis that visualized in situ interactions between endogenous USP11 and SFTPC or SFTPC ."

sparser
"However, no PLA dots were observed in cells stained with either USP11 or SFTPC antibody alone (Figure xref J; left and middle panel), suggesting that USP11 interacts with the SFTPC protein endogenously."

reach
"The interaction between USP11 and SFTPC and its ubiquitination status was validated by immunoprecipitation and the TUBEs assay."

reach
"Next, to explain the mechanism by which USP11 regulates the SFTPC protein level, we examined whether USP11 physically associates with SFTPC in vivo by using a co-immunoprecipitation (co-IP) assay with specific antibodies against endogenous USP11 and SFTPC."

reach
"Furthermore, we used Duolink PLA analysis, wherein the fluorescent signals (PLA dots) represent interactions between the target and substrate, to visualize in situ interactions between endogenous USP11 and SFTPC 29."
PTEN affects USP11
1 | 6 5
PTEN binds USP11.
1 | 3 5
1 | 3 5

reach
"Moreover, Lnc-DILC facilitated the association between USP11 (Ubiquitin specific peptidase 11) and PTEN, and inhibited the WWP2-mediated ubiquitylation of PTEN."

reach
"co-immunoprecipitation assays were performed to assess the influence of lnc-DILC overexpression or knockdown in the interaction of PTEN and USP11, and the results demonstrated a promotive effect of lnc-DILC on PTEN-USP11 association (Fig. 6d, e)."

sparser
"Notably, wild-type (WT) USP11 deubiquitinated PTEN in vivo and in vitro, whereas the catalytically inactive USP11 C318S (CS) mutant, which could still bind to PTEN, exerted a dramatically diminished ability to deubiquitinate PTEN, and even exhibited a more heavy ubiquitinating effect (Fig.  xref and Supplementary Fig.  xref )."

sparser
"Taken together, these results suggest that PTEN-PI3K/AKT-FOXO and USP11-PTEN integrate into a PTEN feedforward signaling network (Fig.  xref )."

sparser
"The results of molecular simulation docking showed that USP11 spontaneously bound to PTEN (Fig.  xref d)."

sparser
"The Co-IP results revealed that USP11 and PTEN interact with each other at the protein level (Fig.  xref f)."

reach
"Detecting the association between USP11 and Phosphatase and Tensin Homolog (PTEN) through Co-IP."

sparser
"Further work is needed to precisely characterize the function/activity of the USP11-PTEN axis in DNA repair by the HR pathway to maintain genomic stability and suppress tumorigenesis."
PTEN increases the amount of USP11.
| 3
PTEN increases the amount of USP11. 3 / 3
| 3

reach
"Furthermore, we discovered that PTEN-induced FOXO activation promotes USP11 transcription, which in turn stabilizes PTEN, suggesting that PTEN autoregulates itself through a PI3K-FOXO-USP11 feedforward loop to create a PTEN ‘integrated circuit’ that induces tumor suppression."

reach
"While PTEN can increase the transcriptional level of USP11 through the PI3K/FOXO pathway, USP11 is a key physiological PTEN deubiquitinase that upregulates PTEN levels by reversing polyubiquitination [MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

reach
"PTEN activates the transcription of USP11 by the PI3K/FOXO pathway to enhance its own stability in prostate cancer cell line [26]."
VCP affects USP11
2 | 5 4
2 | 5 4

sparser
"The results revealed that USP11 can form a complex with VCP in HCT116 cells (Figure xref B)."

reach
"USP11 might interact with and stabilize VCP."

sparser
"These findings confirmed the interaction between USP11 and VCP."

sparser
"These findings suggested that USP11 could interact with VCP and prevent its degradation."

sparser
"The endogenous and exogenous Co-IP assays confirmed the interaction between USP11 and VCP in our research."

reach
"The results revealed that USP11 can form a complex with VCP in HCT116 cells."

reach
"These findings confirmed the interaction between USP11 and VCP."

reach
"These findings suggested that USP11 could interact with VCP and prevent its degradation."

reach
"The endogenous and exogenous Co-IP assays confirmed the interaction between USP11 and VCP in our research."
USP11 affects SREBF1
| 9 2
USP11 binds SREBF1.
| 3 2
| 3 2

sparser
"USP11 directly interacts with SREBF1, and its silencing leads to the disruption of SREBF1 stabilization through K48-linked deubiquitination and degradation."

sparser
"Importantly, the truncated mutant USP11 (503-938 aa) interacts with the truncated mutant SREBF1 (569-1147aa), with K1151 playing a crucial role in this interaction."

reach
"Consistent with the mass spectrometry results, Co-IP assays demonstrated interactions between endogenous SREBF1 and USP11 in HCC-LM3, HepG2, and Huh7 cells (Fig. 1B)."

reach
"The aforementioned studies demonstrate an interaction between USP11 and the key lipid metabolism regulator SREBF1, with previous research suggesting that USP11 may be associated with cancer metabolism."

reach
"We further demonstrated that USP11 directly binds to and stabilizes SREBF1."
USP11 activates SREBF1.
| 4
USP11 activates SREBF1. 4 / 4
| 4

reach
"USP11 promotes lipogenesis and tumorigenesis by regulating SREBF1 stability in hepatocellular carcinoma."

reach
"Additionally, there is an urgent need to develop effective inhibitors targeting the USP11-SREBF1 axis and evaluate their impact on HCC proliferation and metastasis in preclinical and clinical studies.In conclusion, our study highlights that USP11 enhances lipogenesis and tumorigenesis in HCC by regulating SREBF1 stability."

reach
"Our research findings confirm that USP11 promotes tumor lipogenesis and progression by upregulating SREBF1."

reach
"USP11 accelerates HCC lipogenesis and progression by up-regulating SREBF1."
USP11 deubiquitinates SREBF1.
| 2
USP11 deubiquitinates SREBF1. 2 / 2
| 2

reach
"USP11 deubiquitinates SREBF1."

reach
"Additionally, in vitro experiments have also demonstrated that HA-USP11 can significantly promote the deubiquitination of Flag-SREBF1(Fig. 3D)."
EIF4B affects USP11
4 | 7
4 | 7

reach
"Significantly, it was established that USP11 is bonafide substrate of S6Kinase and phosphorylation of USp11 at Ser 453 regulates the recruitment of USP11 on cap complex as well as its interaction with eIF4B, thus increasing the eIF4B driven oncogenes expression."

reach
"Furthermore, FASN enhanced the interaction between USP11 and eIF4B in diffuse large-B cell lymphoma cell lines, thus promoting unconstrained protein translation and growth [25]."

reach
"We showed before that fatty acid synthase is involved with DLBCL progression in part by inducing PI3K-Akt-S6Kinase signaling to enhance interactions a USP11-eIF4B complex ."

reach
"In light of this apparently conflicting observation based on in vitro and cell based deubiquitination assays, we next examined whether the interaction between USP11 and eIF4B was S6Kinase dependent."

reach
"Finally, the interaction between eIF4B and USP11 is directly modulated by FASN mediated S6Kinase activity."

reach
"Fatty Acid Synthase induced S6Kinase facilitates USP11 and eIF4B complex formation for sustained oncogenic translation in DLBCL."

reach
"USP11 interacts and deubiquitinates eIF4B."
EIF affects USP11
| 10
EIF binds USP11. 10 / 10
| 10

sparser
"Moreover, phosphorylation of p70-RSK was noted to be reduced in ABC-, but not in GC-DLBCLs, upon either C75 treatment or FASN depletion, indicating that active p70-RSK may be driving the USP11-eIF4B interaction for sustained oncogene expression (Supplementary Figure  xref )."

sparser
"We showed before that fatty acid synthase is involved with DLBCL progression in part by inducing PI3K-Akt-S6Kinase signaling to enhance interactions a USP11-eIF4B complex xref ."

sparser
"In light of this apparently conflicting observation based on in vitro and cell-based deubiquitination assays, we next examined whether the interaction between USP11 and eIF4B was S6Kinase-dependent."

sparser
"Finally, the interaction between eIF4B and USP11 is directly modulated by FASN-mediated S6Kinase activity (Fig.  xref )."

sparser
"The interaction of USP11 with eIF4B, a protein that interacts and promotes the activity of eIF4A, implicated its role in regulating de novo peptide synthesis."

sparser
"Furthermore, FASN enhanced the interaction between USP11 and eIF4B in diffuse large-B cell lymphoma cell lines, thus promoting unconstrained protein translation and growth [ xref ]."

sparser
"Our previous report ( xref ) noted that FASN activated PI3K signaling tethered USP11-eIF4B interactions."

sparser
"One novel potential lymphoma-associated driver of eIF4B is fatty acid synthase (FASN) which stabilizes eIF4B and increase expression of oncoproteins such as MYC, BCL6 and MCL1 (a BCL2-related anti-apoptotic protein) via formation of a complex between eIF4B and the deubiquitinase USP11 in DLBCL cells [ xref ]."

sparser
"We previously reported that USP11, a bona fide eIF4B deubiquitinase, is phospho-modified by p70-S6Kinase and this posttranslational event enhances USP11eIF4B interactions ( xref )."

sparser
"FASN can induce S6Kinase to facilitate the formation of the USP11-eukaryotic initiation factor 4B (eIF4B) complex for sustained tumorigenic translation in DLBCL."
USP4 affects USP11
5 | 2 3
5 | 2

reach
"USP4 can form stable homodimers and can also interact with USP11 and USP15."

reach
"Importantly, USP4 could bind to itself and also interact with USP11 and USP15, and thus may be part of a DUB complex when exerting its function."
USP4 binds USP11 and USP15. 3 / 3
| 3

sparser
"USP15 forms a subfamily with USP4 and USP11 related through a shared presence of N-terminal &quot;domain present in ubiquitin specific proteases&quot; (DUSP) and &quot;ubiquitin-like&quot; (UBL) domains (DU subfamily)."

sparser
"Human deubiquitinase Usp15 forms a small subfamily with its close relatives Usp11 and Usp4, which all share a common domain architecture."

sparser
"USP4 can form stable homodimers and can also interact with USP11 and USP15 ( Fig. 4 )."
USP11 affects eIF
| 10
EIF binds USP11. 10 / 10
| 10

sparser
"Moreover, phosphorylation of p70-RSK was noted to be reduced in ABC-, but not in GC-DLBCLs, upon either C75 treatment or FASN depletion, indicating that active p70-RSK may be driving the USP11-eIF4B interaction for sustained oncogene expression (Supplementary Figure  xref )."

sparser
"We showed before that fatty acid synthase is involved with DLBCL progression in part by inducing PI3K-Akt-S6Kinase signaling to enhance interactions a USP11-eIF4B complex xref ."

sparser
"In light of this apparently conflicting observation based on in vitro and cell-based deubiquitination assays, we next examined whether the interaction between USP11 and eIF4B was S6Kinase-dependent."

sparser
"Finally, the interaction between eIF4B and USP11 is directly modulated by FASN-mediated S6Kinase activity (Fig.  xref )."

sparser
"The interaction of USP11 with eIF4B, a protein that interacts and promotes the activity of eIF4A, implicated its role in regulating de novo peptide synthesis."

sparser
"Furthermore, FASN enhanced the interaction between USP11 and eIF4B in diffuse large-B cell lymphoma cell lines, thus promoting unconstrained protein translation and growth [ xref ]."

sparser
"Our previous report ( xref ) noted that FASN activated PI3K signaling tethered USP11-eIF4B interactions."

sparser
"One novel potential lymphoma-associated driver of eIF4B is fatty acid synthase (FASN) which stabilizes eIF4B and increase expression of oncoproteins such as MYC, BCL6 and MCL1 (a BCL2-related anti-apoptotic protein) via formation of a complex between eIF4B and the deubiquitinase USP11 in DLBCL cells [ xref ]."

sparser
"We previously reported that USP11, a bona fide eIF4B deubiquitinase, is phospho-modified by p70-S6Kinase and this posttranslational event enhances USP11eIF4B interactions ( xref )."

sparser
"FASN can induce S6Kinase to facilitate the formation of the USP11-eukaryotic initiation factor 4B (eIF4B) complex for sustained tumorigenic translation in DLBCL."
USP11 affects USP4
5 | 2 3
5 | 2

reach
"USP4 can form stable homodimers and can also interact with USP11 and USP15."

reach
"Importantly, USP4 could bind to itself and also interact with USP11 and USP15, and thus may be part of a DUB complex when exerting its function."
USP4 binds USP11 and USP15. 3 / 3
| 3

sparser
"USP15 forms a subfamily with USP4 and USP11 related through a shared presence of N-terminal &quot;domain present in ubiquitin specific proteases&quot; (DUSP) and &quot;ubiquitin-like&quot; (UBL) domains (DU subfamily)."

sparser
"Human deubiquitinase Usp15 forms a small subfamily with its close relatives Usp11 and Usp4, which all share a common domain architecture."

sparser
"USP4 can form stable homodimers and can also interact with USP11 and USP15 ( Fig. 4 )."
USP11 affects TGFB1
| 5
USP11 activates TGFB1. 5 / 10
| 5

reach
"Consistent with their findings, we also revealed that USP11 promotes TGFbeta-1 signaling."

reach
"Three examples of deubiquitinating enzymes for TbetaR-I are ubiquitin specific peptidase-4 (USP4), -11 (USP11) and -15 (USP15), all of which antagonize the effect of SMAD7 and strongly induce TGF-beta1 signalling [XREF_BIBR]."

reach
"De-ubiquitinating enzyme, USP11, promotes transforming growth factor beta-1 signaling through stabilization of transforming growth factor beta receptor II."

reach
"As USP11 promotes TGFbeta-1 signaling through stabilization of TbetaRII, we hypothesize that USP11 may have a critical role in the development of lung fibrosis."

reach
"Here we reveal that a de-ubiquitinating enzyme, USP11, promotes TGFbeta-1 signaling through de-ubiquitination and stabilization of TbetaRII."
USP11 affects PCGF2
3 | 7
USP11 binds PCGF2.
3 | 2
3 | 2

reach
"Although the co-precipitation data implied that both USP7 and USP11 can interact with MEL18 and BMI1, they did not address whether this occurred within the context of a canonical PRC1 complex."

reach
"In view of the co-precipitation and size fractionation data, it was of interest to know whether USP7 and USP11 interact directly with MEL18 and BMI1 or other PRC1 components."
USP11 activates PCGF2.
| 3
USP11 activates PCGF2. 3 / 3
| 3

reach
"Knockdown of USP7 or USP11 causes increased turnover of chromatin bound MEL18 and BMI1, whereas over-expression of the USPs reduces the levels of mono- and poly-ubiquitination of these proteins [XREF_BIBR]."

reach
"Knockdown of USP7 or USP11 causes increased turnover of chromatin bound MEL18 and BMI1, whereas over-expression of the USPs reduces the levels of mono- and poly-ubiquitination of these proteins."

reach
"Importantly, knockdown of either USP7 or USP11 reduces the total and chromatin bound pool of BMI1 and MEL18, and the effects can be mitigated by inhibiting proteasome function."
USP11 deubiquitinates PCGF2.
| 2
USP11 deubiquitinates PCGF2. 2 / 2
| 2

reach
"Importantly, over-expression of HA tagged USP7 or USP11 reduced the overall ubiquitination of MEL18 (XREF_FIG, lanes 2 and 4)."

reach
"Nevertheless, MEL18 and BMI were deubiquitylated by USP7 and USP11, two chromatin bound components of polycomb and repressive complex 1 complex components that influence the transcriptional regulation of p16INK4a [XREF_BIBR]."
PML affects USP11
4 | 4 2
PML binds USP11.
4 | 2 2
4 | 2 2

reach
"USP11 interacts with and stabilizes PML."

reach
"Interaction between endogenous USP11 and endogenous PML was also detected by reciprocal coimmunoprecipitations and the specificity of this interaction was confirmed by using lysates derived from PML-null mouse embryonic fibroblasts (MEFs; XREF_FIG)."

sparser
"Furthermore, purified USP11 and PML-I interacted in vitro ( xref )."

sparser
"Interaction between endogenous USP11 and endogenous PML was also detected by reciprocal coimmunoprecipitations and the specificity of this interaction was confirmed by using lysates derived from PML -null mouse embryonic fibroblasts (MEFs; xref )."
PML inhibits USP11.
| 2
PML inhibits USP11. 2 / 2
| 2

reach
"Remarkably, this PML knockdown completely abrogated these tumour suppressing effects of USP11 (XREF_FIG)."

reach
"Our study uncovers a PML degradation mechanism through Notch and Hey1 induced repression of the PML deubiquitinase USP11 and suggests an important role for this pathway in brain tumour pathogenesis."
NFE2L2 affects USP11
5 | 1 4
5 | 1 4

sparser
"The innate interaction of USP11 and Nrf2 was determined through Co-IP assays in CRC cells in our study (Fig. xref )."

sparser
"In the dual-luciferase reporter assay, we found that the luciferase activity of the Nrf2 group was significantly higher than that of the Vector group, indicating that Nrf2 could bind to the USP11 promoter region (Fig. xref )."

sparser
"Therefore, targeted suppression of the USP11-Nrf2 axis or promotion of Nrf2 ubiquitination to reduce the high expression of Nrf2 may represent effective strategies to reduce drug resistance and increase the susceptibility to ferroptosis of LUAD cells."

sparser
"In addition, Nrf2 could bind to the USP11 promoter region to enhance its transcription, forming a positive feedback loop."

reach
"It inhibits mitochondrial apoptosis and activates CRC progression through the binding of NRF2 to the antioxidant reaction element (ARE) in the USP11 promoter to activate its transcription [113]."
USP11 affects SLC11A1
| 9
USP11 binds SLC11A1.
| 4
| 4

reach
"These results suggest that erastin disrupts the interaction between LSH and USP11, leading to increased ubiquitination and subsequent degradation of LSH."

reach
"Mechanistically, LSH interacts with and is stabilized by ubiquitin-specific protease 11 (USP11) via deubiquitination; this interaction was disrupted by erastin treatment, resulting in increased ubiquitination and LSH degradation."

reach
"Moreover, Co-IP experiments confirmed an obvious interaction between LSH and USP11, primarily within the nuclei of HCT116 cells (Fig. 2E, F)."

reach
"The interaction between USP11 and LSH decreased with the duration of erastin treatment, and the reduction in interaction was significant at 8 hours when the level of LSH was not significantly affected (Fig. 4E)."
USP11 deubiquitinates SLC11A1.
| 3
USP11 deubiquitinates SLC11A1. 3 / 3
| 3

reach
"Furthermore, the ubiquitination levels of endogenous LSH were increased upon USP11 depletion (Fig. 3J); and USP11 was capable of directly deubiquitinating LSH in vitro instead of its C318A mutant (Fig. 3K)."

reach
"In addition, Duan et al. found that USP11 can mediate LSH deubiquitination and activate CYP24A1 to inhibit ferroptosis in colorectal cancer (Duan et al., 2023)."

reach
"USP11 mediated the deubiquitination of LSH and inhibited ferroptosis in colorectal cancer through epigenetic activation of CYP24A1, suggesting a role in cancer cell survival [10]."
USP11 increases the amount of SLC11A1.
| 2
USP11 increases the amount of SLC11A1. 2 / 2
| 2

reach
"Treatment of HCT116 and SW620 cells with mitoxantrone (MTX), a USP11 enzyme activity inhibitor [34], led to a pronounced reduction in LSH protein levels (Fig. 3D)."

reach
"Consistently, overexpression of wild-type USP11 (WT) but not the catalytically inactive mutant (C318A) increased LSH protein levels (Fig. 3E)."
USP11 affects LCK
3 | 6
USP11 binds LCK.
3 | 4
3 | 2

reach
"The interaction between USP11/USP7 and LCK was verified by using immunoprecipitation studies (Fig. 3F and fig."

reach
"Of note, we did not detect interaction between LCK and USP7 or USP11 in unstimulated mouse thymocytes (fig."
USP7 binds USP11 and LCK. 2 / 2
| 2

reach
"Thus, CUTLL1 cells were treated with DXM to evaluate the effect of GCs on the USP7/USP11-LCK complex."

reach
"We demonstrated that disruption of the USP7/USP11-LCK complex sensitizes T-ALL to GC treatment via NR3C1 up-regulation."
USP11 deubiquitinates LCK.
| 2
USP11 deubiquitinates LCK. 2 / 2
| 2

reach
"USP11 forms a complex with USP7 to deubiquitinate the oncogenic lymphocyte cell-specific protein-tyrosine kinase (LCK) and enhance its activity."

reach
"Furthermore, the effect on deubiquitination of LCK was stronger upon co-overexpression of USP7 and USP11 compared with overexpression of USP7 or USP11 alone, further confirming that USP7 and USP11 cooperate to deubiquitinate LCK (Fig. 3M)."
RAE1 affects USP11
3 | 4 2
3 | 4 2

sparser
"Since knock-down of SPRYD3 or PAM in U2OS cells had no significant effect on cell proliferation, we chose to focus on the interaction between USP11 and its substrate RAE1."

reach
"Independent reciprocal IPs using Flag- and hemagglutinin (HA)-tagged versions of the proteins transiently expressed in 293T cells, confirmed the interaction between USP11, RAE1, SPRYD3 and KCTD6 (XREF_FIG)."

reach
"Since knock-down of SPRYD3 or PAM in U2OS cells had no significant effect on cell proliferation, we chose to focus on the interaction between USP11 and its substrate RAE1."

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."

sparser
"Anna Stockum et al. [ xref ] found that USP11 interacts with RAE1 and facilitates the proliferation of osteosarcoma cell U2OS via deubiquitinating RAE1."
IsoLiPro affects USP11
| 9
IsoLiPro decreases the amount of USP11.
| 4
IsoLiPro decreases the amount of USP11. 4 / 4
| 4

reach
"Therefore, IsoLiPro may promote tau degradation by reducing the USP11 level.Subsequently, to investigate if IsoLiPro enhances tau clearance by disrupting USP11-tau stability, we conducted an immunoprecipitation (IP) analysis (Fig. 1E)."

reach
"Fortunately, docking assays further revealed direct binding of IsoLiPro with USP11, and cell-based experiments indicated that IsoLiPro decreases USP11 protein level and enhances tau ubiquitination level, which might contribute to the downregulated total tau."

reach
"This provides us a new perspective for future studies.In conclusion, in our present study, we found that IsoLiPro can lower USP11 protein levels both in vivo and in vitro, mainly through modulating protein degradation without impacting directly the USP11 enzyme activity, and consequently ameliorate AD pathologies in transgenic AD animal model."

reach
"Our data showed that IsoLiPro does not significantly suppress USP11 mRNA expression (Fig. EV3G)."
IsoLiPro binds USP11.
| 3
IsoLiPro binds USP11. 3 / 3
| 3

reach
"Our data revealed that IsoLiPro can strongly bind to USP11 with a dissociation constant (Kd) of 4.3394E-05 M (Fig. EV4D)."

reach
"This low Kd value signifies a strong affinity between IsoLiPro and USP11, underscoring its potential in therapeutic applications.The differences in binding to USP11 among these molecules were further elucidated through analysis of MD parameters, including RMSD, RMSF, Rg, and SASA."

reach
"Fortunately, docking assays further revealed direct binding of IsoLiPro with USP11, and cell-based experiments indicated that IsoLiPro decreases USP11 protein level and enhances tau ubiquitination level, which might contribute to the downregulated total tau."
IsoLiPro inhibits USP11.
| 2
IsoLiPro inhibits USP11. 2 / 2
| 2

reach
"Our results show that following the inhibition of USP11 by IsoLiPro, the degradation of these approximately 70 KD tau proteins was first promoted."

reach
"To further investigate the mechanism by which IsoLiPro inhibits USP11 protein, molecular docking of USP11 (PDB ID: 4MEL) with IsoLiPro was conducted using Autodock Vina and visualized via PyMOL software."
BRCA2 affects USP11
4 | 1 2 2
4 | 1 2 2

reach
"BRCA2 is ubiquitinated in vivo and interacts with USP11, a deubiquitinating enzyme that exhibits prosurvival function in the cellular response to DNA damage."

sparser
"Mitoxantrone, a PARPi that targets the USP11 key enzyme that interacts with BRCA2, has been shown to be 40- to 20,000-fold more potent than the current gemcitabine first-line treatment in 2 PDAC cell [MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"Another DUB, USP11, forms a complex with BRCA2."

reach
"BRCA2 is ubiquitinated in vivo and interacts with USP11, a deubiquitinating enzyme that exhibits prosurvival function in the cellular response to DNA damage."

trips
"BRCA2 is ubiquitinated in vivo and interacts with USP11, a deubiquitinating enzyme that exhibits prosurvival function in the cellular response to DNA damage."
Tat affects USP11
2 1 | 2 3
2 1 | 2 3

sparser
"SMYD5 levels increase in complex with Tat and the Tat cofactor USP11."

sparser
"We confirmed the interaction of USP11 and Tat by co-immunoprecipitating endogenous USP11 with overexpressed Tat in HEK293T cells ( xref )."

sparser
"Although we characterize the cellular interaction between SMYD5 with the viral protein Tat and the host protein USP11 and their effect on HIV-1 transcription, additional work is necessary to translate this into clinical application."

reach
"In a large HIV-1:host protein interactome in HEK293T cells, the Tat protein associated with USP11 (Figure 6A)."

reach
"We confirmed the interaction of USP11 and Tat by co-immunoprecipitating endogenous USP11 with overexpressed Tat in HEK293T cells (Figure 6B)."
MiR-132-3p affects USP11
| 1 7
MiR-132-3p inhibits USP11.
| 1 2
MiR-132-3p inhibits USP11. 3 / 3
| 1 2

reach
"USP11 abundance was significantly decreased by miR-132-3p overexpression, and it was upregulated via addition of USP11 overexpression vector."

eidos
"Conclusion Circ_DOCK1 interference suppressed cell growth and metastasis , and increased apoptosis of colorectal cancer via decreasing USP11 by increasing miR-132-3p ."

reach
"Consistent with these reports, our study found USP11 reversed the anti-cancer function of miR-132-3p, indicating miR-132-3p could modulate colorectal cancer development by targeting USP11."
MiR-132-3p activates USP11.
| 3
MiR-132-3p activates USP11. 3 / 3
| 3

reach
"USP11 is targeted by miR-132-3p and regulated via circ_DOCK1 and miR-132-3p axis."

reach
"These results suggested miR-132-3p overexpression could repress colorectal cancer development by targeting USP11."

reach
"Then, we analyzed the downstream of miR-132-3p and firstly confirmed miR-132-3p could target USP11."
MiR-132-3p binds USP11.
| 2
MiR-132-3p binds USP11. 2 / 2
| 2

reach
"We performed the bioinformatic analysis to predict the potential interaction between miR-132-3p and circ_DOCK1 or USP11."

reach
"A RIP kit (Geneseed, Guangzhou, China) was used to analyze the binding of miR-132-3p and USP11."
USP9X affects USP11
| 8
| 5

sparser
"We also estimated the interaction between CNVs of USP9X and USP11 on CRC risk in the multivariate logistic regression analyses."

sparser
"There were significant synergistic interactions between USP9X and USP11 CNVs on the risk of CRC (Supplementary Table S7)."

sparser
"Similarly, USP9x and USP11 interact and deubiquitinate Smad4 and ALK5, respectively, [ xref , xref ] to regulate the transforming growth factor/BMP cell signaling pathways necessary for osteogenic differentiation and bone formation."

sparser
"Moreover, there were gene–gene interactions between CNVs of USP9X and USP11 on CRC risk."

sparser
"52 In the gene–gene interaction exploring by MDR analysis, we identified significant synergistic interactions between USP9X and USP11 variants on the risk of CRC."
CYLD binds USP9X and USP11. 3 / 3
| 3

sparser
"Gene–gene interaction using MDR We used MDR analysis to explore the gene–gene interactions between CYLD, USP9X, and USP11 on the risk of CRC."

sparser
"There were significant associations between the CNVs of CYLD, USP9X, and USP11 and increased CRC risk, significant gene–environment interactions on the risk of CRC: CNVs of USP9X interact with fish consumption and USP11 CNVs interact with leftover consumption."

sparser
"Interactions between CNVs of CYLD, USP9X, USP11 genes and environmental factors on the risk of CRC In the del v."
USP11 affects translation
| 8
| 8

reach
"USP11 stimulates translation."

reach
"Overexpression of either eIF4B or USP11 significantly enhanced both cap dependent as well as IRES mediated translation in a dose dependent manner."

reach
"Similarly, the Gartenhaus lab using both pharmacologic and genetic approaches, reported that FASN induced S6Kinase signaling to phosphorylate USP11 enhancing its interaction and stability of eIF4B in DLBCL consequently promoting oncogenic translation (11)."

reach
"USP11 stabilizes and enhances Eukayotic translation initiation factor 4B (eIF4B) activity and promotes oncogenic translation in diffuse large B cell lymphoma (DLBCL) (34)."

reach
"Ectopic expression of USP11 (W) or USP11 S453D, but not USP11 S453A, enhanced the overall mRNA translation in DLBCLs."

reach
"We further demonstrated that USP11 activity stabilizes eIF4B protein levels and stimulates oncogenic translation."

reach
"Indeed, USP11 was noted to be phosphorylated by S6Kinase that increases its interaction with eIF4B and subsequently enhanced cancer promoting gene translation."

reach
"Moreover, Qisheng Li et al. have employed functional genomics approaches and HCV model systems to demonstrate the involvement of USP11 in HCV-mediated translation, but the finer details of its regulatory mechanisms remain elusive (93)."
USP11 affects tat
2 1 | 2 3
2 1 | 2 3

sparser
"SMYD5 levels increase in complex with Tat and the Tat cofactor USP11."

sparser
"We confirmed the interaction of USP11 and Tat by co-immunoprecipitating endogenous USP11 with overexpressed Tat in HEK293T cells ( xref )."

sparser
"Although we characterize the cellular interaction between SMYD5 with the viral protein Tat and the host protein USP11 and their effect on HIV-1 transcription, additional work is necessary to translate this into clinical application."

reach
"In a large HIV-1:host protein interactome in HEK293T cells, the Tat protein associated with USP11 (Figure 6A)."

reach
"We confirmed the interaction of USP11 and Tat by co-immunoprecipitating endogenous USP11 with overexpressed Tat in HEK293T cells (Figure 6B)."
USP11 affects cell growth
| 8
USP11 inhibits cell growth.
| 5
| 5

reach
"Furthermore, down‐regulation of USP11 significantly suppressed HepG2 cell growth (Figure 4C) and chemoresistance (Figure 4D), and clonogenic assay showed that USP11 silencing greatly suppressed the colony‐forming ability of these HCC cells (Figure 4E)."

reach
"To determine whether USP11 loss inhibits PCa cell growth via effects on AR and/or c-Myc, we reexpressed AR, c-Myc, or both in USP11-KD VCaP cells to levels seen in control cells (Fig. 6A)."

reach
"These findings indicate that USP11 KD inhibits PCa cell growth regardless of PTEN status and suggest that USP11 targets other substrate(s) to promote PCa cell growth."

reach
"Furthermore, our results show that knockdown of USP11 promotes cell growth, migration, and invasion in a YAP dependent manner."

reach
"USP11 suppresses tumor cell growth via the regulation of Mgl-1, and the suppression requires RanBPM expression."
USP11 activates cell growth.
| 3
| 3

reach
"More importantly, USP11 could promote cell growth and metastasis in colorectal cancer [XREF_BIBR, XREF_BIBR]."

reach
"These findings indicate that USP11 KD inhibits PCa cell growth regardless of PTEN status and suggest that USP11 targets other substrate(s) to promote PCa cell growth."

reach
"In this study, we find that USP11 promotes PCa cell growth partly through upregulation of the transcription factors AR and c-Myc."
USP11 affects USP9X
| 8
| 5

sparser
"We also estimated the interaction between CNVs of USP9X and USP11 on CRC risk in the multivariate logistic regression analyses."

sparser
"There were significant synergistic interactions between USP9X and USP11 CNVs on the risk of CRC (Supplementary Table S7)."

sparser
"Similarly, USP9x and USP11 interact and deubiquitinate Smad4 and ALK5, respectively, [ xref , xref ] to regulate the transforming growth factor/BMP cell signaling pathways necessary for osteogenic differentiation and bone formation."

sparser
"Moreover, there were gene–gene interactions between CNVs of USP9X and USP11 on CRC risk."

sparser
"52 In the gene–gene interaction exploring by MDR analysis, we identified significant synergistic interactions between USP9X and USP11 variants on the risk of CRC."
CYLD binds USP9X and USP11. 3 / 3
| 3

sparser
"Gene–gene interaction using MDR We used MDR analysis to explore the gene–gene interactions between CYLD, USP9X, and USP11 on the risk of CRC."

sparser
"There were significant associations between the CNVs of CYLD, USP9X, and USP11 and increased CRC risk, significant gene–environment interactions on the risk of CRC: CNVs of USP9X interact with fish consumption and USP11 CNVs interact with leftover consumption."

sparser
"Interactions between CNVs of CYLD, USP9X, USP11 genes and environmental factors on the risk of CRC In the del v."
USP11 affects PROM1
4 | 3 1
4 | 3 1

reach
"Mass spectrometry analyses showed that the deubiquitinase ubiquitin‐specific protease 11 (USP11) is a CD133‐associated protein and that the interaction between USP11 and CD133 was increased in spheroid CSCs compared to differentiated monolayer cells."

reach
"Importantly, HK2 expression in CSCs promoted the binding of USP11 to CD133, thereby reducing CD133 polyubiquitylation and enhancing its expression.CD133 expression was shown to promote cancer cell stemness, and CD133 CSCs of SCLC are highly tumorigenic [9]."

sparser
"By contrast, differentiated SCLC cells showed a lower CD133-USP11 interaction than CSCs, which indicates another CD133 differential regulation between intratumoral subpopulations apart from gene and epigenetic regulation."

reach
"Wang et al. reported that the interaction between HK2 and CD133 promotes the binding of USP11 to CD133, inhibiting its polyubiquitination and degradation, thereby facilitating tumor immune evasion and cancer stemness [36]."
USP11 affects IGF2BP3
2 | 4 2
USP11 binds IGF2BP3.
2 | 1 2
2 | 1 2

reach
"In colon cancer, USP11 could bind IGF2BP3 and block its ubiquitination degradation, which then promotes tumor proliferation and metastasis [39]."

sparser
"In colon cancer, USP11 could bind IGF2BP3 and block its ubiquitination degradation, which then promotes tumor proliferation and metastasis [ xref ]."

sparser
"Co-immunoprecipitation assays, Western blotting, ubiquitination assays, and rescue experiments were performed to elucidate the interaction between USP11 and insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3)."
USP11 activates IGF2BP3.
| 3
USP11 activates IGF2BP3. 3 / 3
| 3

reach
"USP11 promotes the stability of IGF2BP3 to increase the colorectal cancer metastasis [99]."

reach
"USP11 promotes the proliferation, migration, and invasion of CRC cells by modulating IGF2BP3 stability [84]."

reach
"USP11 promotes colorectal cancer growth and metastasis by stabilizing PPP1CA, activating the ERK/MAPK pathway, and insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) signaling (151), and interacting with nuclear factor 90 (NF90) to promote HCC proliferation and metastasis (152)."
USP11 affects EGFR
2 | 5 1
USP11 binds EGFR.
2 | 1 1
2 | 1 1

reach
"USP11 binds to the epidermal growth factor receptor (EGFR) and deubiquitinates and protects the EGFR from proteasome-dependent degradation, enhancing the transduction of the downstream signaling pathway of TGF-β 67.The ubiquitin system can modulate key molecules of the MAPK signaling pathway and thereby regulate the fibrosis process."

sparser
"USP11 binds to the epidermal growth factor receptor (EGFR) and deubiquitinates and protects the EGFR from proteasome-dependent degradation, enhancing the transduction of the downstream signaling pathway of TGF-β xref ."
USP11 deubiquitinates EGFR.
| 2
USP11 deubiquitinates EGFR. 2 / 2
| 2

reach
"For instance, USP11 deubiquitinates EGFR, thereby stabilizing its protein levels and promoting partial epithelial-to-mesenchymal transition [19]."

reach
"USP11 deubiquitinates EGFR, stabilizing its protein levels and activating the ERK/MAPK pathway [18, 19]."
USP11 activates EGFR.
| 2
USP11 activates EGFR. 2 / 2
| 2

reach
"Additionally, the depletion of USP11, a deubiquitinase that can deubiquitylate EGFR, promotes the degradation of EGFR, reducing nuclear EGFR levels and alleviating tumorigenic activities, including the epithelial-mesenchymal transition (EMT) [85].5.2."

reach
"However, we did not observe evidence supporting the regulation of EGFR by USP11 in pituitary tumor cells and primary models."
USP11 affects BMI1
3 | 5
USP11 binds BMI1.
3 | 2
3 | 2

reach
"Although the co-precipitation data implied that both USP7 and USP11 can interact with MEL18 and BMI1, they did not address whether this occurred within the context of a canonical PRC1 complex."

reach
"In view of the co-precipitation and size fractionation data, it was of interest to know whether USP7 and USP11 interact directly with MEL18 and BMI1 or other PRC1 components."
USP11 activates BMI1.
| 3
USP11 activates BMI1. 3 / 3
| 3

reach
"Knockdown of USP7 or USP11 causes increased turnover of chromatin bound MEL18 and BMI1, whereas over-expression of the USPs reduces the levels of mono- and poly-ubiquitination of these proteins."

reach
"Importantly, knockdown of either USP7 or USP11 reduces the total and chromatin bound pool of BMI1 and MEL18, and the effects can be mitigated by inhibiting proteasome function."

reach
"Knockdown of USP7 or USP11 causes increased turnover of chromatin bound MEL18 and BMI1, whereas over-expression of the USPs reduces the levels of mono- and poly-ubiquitination of these proteins [XREF_BIBR]."
PROM1 affects USP11
4 | 3 1
4 | 3 1

reach
"Mass spectrometry analyses showed that the deubiquitinase ubiquitin‐specific protease 11 (USP11) is a CD133‐associated protein and that the interaction between USP11 and CD133 was increased in spheroid CSCs compared to differentiated monolayer cells."

reach
"Importantly, HK2 expression in CSCs promoted the binding of USP11 to CD133, thereby reducing CD133 polyubiquitylation and enhancing its expression.CD133 expression was shown to promote cancer cell stemness, and CD133 CSCs of SCLC are highly tumorigenic [9]."

sparser
"By contrast, differentiated SCLC cells showed a lower CD133-USP11 interaction than CSCs, which indicates another CD133 differential regulation between intratumoral subpopulations apart from gene and epigenetic regulation."

reach
"Wang et al. reported that the interaction between HK2 and CD133 promotes the binding of USP11 to CD133, inhibiting its polyubiquitination and degradation, thereby facilitating tumor immune evasion and cancer stemness [36]."
PRMT1 affects USP11
| 6 2
PRMT1 methylates USP11. 4 / 4
| 4

reach
"Methylated USP11 then promotes PRMT1 activity towards MRE11 that enables DNA end-resection and RPA loading (Fig. 7g)."

reach
"USP11 is methylated by PRMT1."

reach
"Given that some PRMT-interacting proteins are cofactors rather than substrates , we conducted in vitro methylation assays and confirmed that GST-PRMT1 can directly methylate recombinant human USP11 (Fig. 1b)."

reach
"Indeed, the finding that the methylation of USP11 catalysed by PRMT1 was completely abolished by the R433K mutation strongly implies that at least in vitro, this is the sole residue targeted by PRMT1."
PRMT1 methylates USP11 on R433. 4 / 4
| 2 2

sparser
"For example, Prmt1 methylation of Rbm15 R578 (RNA binding motif protein 15) leads to its degradation via ubiquitylation by Cnot4 (CCR4-NOT transcription complex subunit 4) E3 ligase [ xref ], while Usp11 (Ubiquitin specific peptidase 11) is methylated by Prmt1 at R433, promoting DNA damage repair [ xref ]."

reach
"PRMT1 methylates USP11 at R433."

reach
"For example, Prmt1 methylation of Rbm15 (RNA binding motif protein 15) leads to its degradation via ubiquitylation by Cnot4 (CCR4-NOT transcription complex subunit 4) E3 ligase [32], while Usp11 (Ubiquitin specific peptidase 11) is methylated by Prmt1 at R433, promoting DNA damage repair [33]."

sparser
"Methylation of USP11 by PRMT1 on R433 residue is important for RPA foci formation in late S/G2 cells and for RAD51 loading onto ssDNA at the G2/M checkpoint."
PGAM5 affects USP11
1 | 4 3
1 | 4 3

sparser
"In this study, we found an interaction between PGAM5 and USP11 where de-ubiquitination enhances this interaction, leading to the stabilization of PGAM5."

sparser
"Through exogenous co-IP experiments, we confirmed the existence of protein interactions between USP11 and PGAM5 (Fig.  xref C)."

sparser
"This finding was solidified through co-IP experiments, which confirmed the protein interaction between PGAM5 and USP11."

reach
"In addition, the USP11/PGAM5 complex promotes breast cancer progression by activating iron death-related proteins, indicating that the synergy between USP11 and PGAM5 may serve as a predictor of disease outcome and provide a new treatment strategy for breast cancer."

reach
"In this study, we found an interaction between PGAM5 and USP11 where de-ubiquitination enhances this interaction, leading to the stabilization of PGAM5."

reach
"Through exogenous co-IP experiments, we confirmed the existence of protein interactions between USP11 and PGAM5 (Fig. 4C)."

reach
"This finding was solidified through co-IP experiments, which confirmed the protein interaction between PGAM5 and USP11."
NOTCH1 affects USP11
1 | 7
NOTCH1 increases the amount of USP11.
| 3
NOTCH1 increases the amount of USP11. 3 / 3
| 3

reach
"Based on our finding that NOTCH1 transcriptionally activates USP11 expression, it might be interesting to study the USP11-NOTCH1 positive feedback loop in other cancer types, including colorectal and breast cancer."

reach
"Furthermore, depletion of Notch1 by two independent siRNAs also increased USP11 and PML expression (XREF_FIG)."

reach
"Taken together, we identified a feedback loop regulation between USP11 and NOTCH1, in which NOTCH1 transcriptionally activates USP11 expression and, in turn, USP11 controls NOTCH1 protein levels via deubiquitination.Here, we identified a regulatory feedback loop between NOTCH1 and the USP11 deubiquitinase in T-cell acute lymphoblastic leukemia (T-ALL)."
NOTCH1 binds USP11.
1 | 2
1 | 2

reach
"Immunoprecipitation studies showed that both the catalytically active and inactive forms of USP11 interact with NOTCH1, suggesting the binding of USP11 and NOTCH1 is independent of USP11 deubiquitinase activity (Fig. 2A, B)."

reach
"A previous study showed the potential interaction of USP11 and NOTCH1 in T-ALL cells, suggesting this regulation of NOTCH1 deubiquitination by USP11 might exist in T-ALL as well [8]."
NOTCH1 activates USP11.
| 2
NOTCH1 activates USP11. 2 / 2
| 2

reach
"Taken together, we demonstrate transcriptional activation of USP11 by NOTCH1 in T-ALL.We then hypothesized that USP11 might control NOTCH1 protein levels through deubiquitination based on the positive correlation between USP11 and NOTCH1 protein expression and the deubiquitinating activity of USP11."

reach
"Overexpression of NIC in each GIC reduced USP11 and PML (XREF_FIG), whereas gamma-secretase inhibitor or Notch1 siRNA increased USP11 and PML (XREF_FIG)."
LPAR1 affects USP11
| 3 4
| 3 4

reach
"In contrast to the LPA increased in the association between LPA1 and Nedd4L, LPA treatment reduced the interaction between LPA1 and USP11 (XREF_FIG d)."

reach
"To develop small molecules specific for destabilization of LPA1, future studies will focus on drug throughput screening of small molecules to interrupt the interaction between LPA1 and USP11 interaction, thereby leading destabilization of LPA1 and lessening endotoxin induced inflammatory lung injury."

sparser
"To develop small molecules specific for destabilization of LPA1, future studies will focus on drug throughput screening of small molecules to interrupt the interaction between LPA1 and USP11 interaction, thereby leading destabilization of LPA1 and lessening endotoxin-induced inflammatory lung injury."

sparser
"Phosphorylation increases Nedd4L E3 ligase association with lysophosphatidic acid receptor 1 (LPA1), and reduces deubiquitinase USP11 interaction with LPA1 [ xref ]."

sparser
"LPA1 is associated with USP11 in quiescent cells, while LPA treatment triggers LPA1 dis-association with USP11 and in turn binding to Nedd4L. Knockdown or inhibition of USP11 reduces LPA1 stability, levels of LPA1, and LPA1-CD14 interaction complex; thereby diminishing both LPA- and LPS-induced inflammatory responses and lung injury in preclinical murine models."

reach
"Phosphorylation increases Nedd4L E3 ligase association with lysophosphatidic acid receptor 1 (LPA1), and reduces deubiquitinase USP11 interaction with LPA1 [33]."

sparser
"In contrast to the LPA-increased in the association between LPA1 and Nedd4L, LPA treatment reduced the interaction between LPA1 and USP11 ( xref d)."
H2AX affects USP11
5 | 1 1
5 | 1 1

sparser
"USP11 can physically interact with H2AX and localises to sites of DNA damage, reinforcing its role in DSB repair signalling, while its activity against H2A-Ub is proposed to be at K119/K120 in H2A, rather than the RNF168/53BP1-relevant H2AK13/15 [ xref ] ( xref )."

reach
"Mechanistically, USP11 interacts with and deubiquitinates γH2AX [33]."

reach
"However, the precise mechanism by which USP11 promotes EMT and metastasis in hepatocellular carcinoma (HCC) is not fully understood."

reach
"Functional experiments demonstrated that USP11 markedly promoted metastasis and EMT in HCC via induction of the transcription factor Snail."

reach
"TGFBR2 can be altered by USP11 (ubiquitin-specific peptidases 11) de-ubiquitination, which induced EMT in mammary epithelial cells via modulating TGF β signalling (50)."

reach
"USP11 may promote EMT in vitro by deubiquitination of TGFBR2 and SNAIL, while it may also maintain luminal or epithelial cell features through stabilization of PTEN and positive regulation of ERα transcriptional activity (29, 30)."

reach
"We demonstrated that USP11 promotes EMT and metastasis in HCC via eEF1A1/SP1/HGF dependent-EMT."

reach
"For example, USP3, USP11, and USP29 stimulate EMT in glioblastoma cells, as well as in ovarian or gastric cancer cells, respectively, by stabilizing Snail [80–82] ."

reach
"These data suggest that USP11 enhances the pathogenic effects of the SFTPC mutation by promoting cellular EMT processes that contribute to fibrosis progression."
USP11 affects SOX11
| 7
USP11 activates SOX11.
| 5
USP11 activates SOX11. 5 / 5
| 5

reach
"Last, using a cycloheximide-chase assay, we found that Usp11 knockdown decreased the stability of Sox11 (XREF_FIG)."

reach
"Whereas expression of wild-type Usp11 increased Sox11 abundance, this mutant did not up-regulate Sox11 (XREF_FIG)."

reach
"This Sox11 down-regulation was rescued by re-expression of wild-type Usp11, but not Usp11 R241Q (XREF_FIG)."

reach
"It is intriguing that Usp11 targets Sox11, but not its paralog Sox4, in the developing cortex."

reach
"In summary, our study identifies the functions of Usp11 mediated Sox11 stabilization in cortical development, provides an explanation for the association of Usp11 mutation with neurological disorder, and highlights the importance of deubiquitination triggered protein stabilization in the developmental process."
USP11 increases the amount of SOX11.
| 2
USP11 increases the amount of SOX11. 2 / 2
| 2

reach
"Human USP11 also up-regulated SOX11 expression, demonstrating the evolutional conservation of the Usp11 and Sox11 axis."

reach
"As expected, Usp11 knockdown decreased the expression of Sox11."
USP11 affects SNAI1
1 | 6
USP11 deubiquitinates SNAI1.
1 | 4
USP11 deubiquitinates SNAI1. 4 / 5
1 | 4

reach
"Upregulation of USP11 promotes epithelial-to-mesenchymal transition by deubiquitinating Snail in ovarian cancer."

reach
"Our results revealed that USP11 promoted EMT in ovarian cancer by deubiquitinating Snail, and USP11 may be a novel therapeutic target for ovarian cancer treatment."

reach
"USP11 promotes proliferation and metastasis of hepatocellular carcinoma cells by deubiquitinating and stabilizing E2F1 (19), and USP11 promotes invasion and metastasis of ovarian cancer by deubiquitinating and stabilizing the transcription factor Snail (20)."

reach
"USP11 is upregulated and promotes EMT by deubiquitinating Snail in ovarian cancer (77)."
USP11 activates SNAI1.
| 2
USP11 activates SNAI1. 2 / 2
| 2

reach
"For example, USP3, USP11, and USP29 stimulate EMT in glioblastoma cells, as well as in ovarian or gastric cancer cells, respectively, by stabilizing Snail [80–82] ."

reach
"However, USP11 could also promote tumorgenesis by stabilizing Snail, eIF4B and cIAP2 [22,37,38]."
USP11 affects E7
2 | 4 1
USP11 binds E7.
2 | 2 1
2 | 2 1

sparser
"Indeed E7 binds to USP11 and reduces the ubiquitination and therefore increases the stability of E7 ( Lin et al., 2008 )."

reach
"Both in vitro and in vivo, USP11 binds E7 and reduces the extent of poly-ubiquitination."

reach
"Lastly, in what is perhaps an attempt to counter the host 's efforts to destroy it, E7 also interacts with the cellular DUB USP11, which leads to the stabilization of E7."
USP11 activates E7.
| 2
USP11 activates E7. 2 / 2
| 2

reach
"USP11 promotes cervical cancer progression and proliferation through deubiquitination and stabilization of HPV-16E7, subsequently affecting the biological function of E7 as well as the HPV-16E7 contribution to cellular transformation [104] (Fig. 4)."

reach
"Over expression of USP11 increases the half-life of E7 while siRNA knockdown of USP11 enhanced E7 degradation with a concomitant loss of E7 transforming activity in CaSki cells."
USP11 affects BRCA1
1 | 3 3
1 | 3 3

sparser
"Collectively, MYCN prevents collisions between transcription and replication by evicting stalling RNAPII from promoter-proximal positions via association with USP11BRCA1 decapping complexes or the RN[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"MYC was able to bind USP11, but unable to promote association of USP11 with BRCA1 ( xref )."

sparser
"The interaction between BRCA1 and USP-11 has not been investigated yet; however a recent study reported that the DSB repair function of USP-11 were independent of the BRCA1 localization [ xref ]."

reach
"In neuroblastoma cells, N-Myc-dependent recruitment of BRCA1 and USP11 to transcriptional pause sites facilitates mRNA de-capping and the release of stalled RNA polymerases, thereby suppressing R-loop accumulation [94]."

reach
"The formation of a MYCN–BRCA1USP11 complex eliminates R-loops at promoters and engages mRNA decapping complexes comprising DCP1A, DCP2, and EDC4."

reach
"The interaction between BRCA1 and USP-11 has not been investigated yet; however a recent study reported that the DSB repair function of USP-11 were independent of the BRCA1 localization [XREF_BIBR]."
| 7

reach
"Taken together these data, we hypothesized that USP11 might mediate resistance to 5-Fu by inducing autophagy in colorectal cancer cells and verified the hypothesis in follow-up experiments."

reach
"The above experimental results have confirmed that USP11 could not only mediate the resistance to 5-Fu, but also induce autophagy in colorectal cancer cells."

reach
"Thus, we hypothesized that USP11 could promote resistance to 5-Fu in colorectal cancer by inducing autophagy."

reach
"The experimental results showed that USP11 overexpression could enhance CRC cells resistance to 5-Fu, and knockdown of USP11 could result in CRC cells being more vulnerable to 5-Fu."

reach
"The results showed that USP11 overexpression significantly enhanced the resistance of HCT8 cells to 5-Fu compared with the control group, whereas the opposite effect was observed in USP11 knockdown HCT116 cells (P < 0.05, Student 's t test)."

reach
"In our study, the resistance to 5-Fu induced by USP11 can be weakened by VCP knockdown or autophagy inhibitors."

reach
"USP11 promotes 5-Fu resistance through inducing autophagy dependent on VCP."
Notch affects USP11
| 5
Notch inhibits USP11.
| 2
Notch inhibits USP11. 2 / 4
| 2

reach
"In line with this notion, we showed that mouse Usp11 was repressed by the Notch and Hes1 axis, as overexpression of an active form of Notch (Notch intracellular domain, referred to as NIC) or Hes1 in a neuroblastoma cell line N2a diminished Usp11 expression and the promoter activity of Usp11 gene."

reach
"We further showed that USP11 is transcriptionally repressed by the Notch effector Hey1."
Notch decreases the amount of USP11.
| 3
Notch decreases the amount of USP11. 3 / 3
| 3

reach
"Since our previous study found that human USP11 transcription is repressed by the Notch pathway, the up-regulation of Usp11 is likely a consequence of Notch inactivation upon the induction of neuronal differentiation."

reach
"In line with this notion, we showed that mouse Usp11 was repressed by the Notch and Hes1 axis, as overexpression of an active form of Notch (Notch intracellular domain, referred to as NIC) or Hes1 in a neuroblastoma cell line N2a diminished Usp11 expression and the promoter activity of Usp11 gene."

reach
"However, it was recently demonstrated that Notch and Hey1 transcriptionally represses the expression of the PML deubiquitinase USP11, thereby down-regulating PML protein levels."
LCK affects USP11
3 | 4
3 | 2

reach
"The interaction between USP11/USP7 and LCK was verified by using immunoprecipitation studies (Fig. 3F and fig."

reach
"Of note, we did not detect interaction between LCK and USP7 or USP11 in unstimulated mouse thymocytes (fig."
USP7 binds USP11 and LCK. 2 / 2
| 2

reach
"Thus, CUTLL1 cells were treated with DXM to evaluate the effect of GCs on the USP7/USP11-LCK complex."

reach
"We demonstrated that disruption of the USP7/USP11-LCK complex sensitizes T-ALL to GC treatment via NR3C1 up-regulation."
KLF4 affects USP11
3 | 3 1
3 | 3 1

reach
"Since USP11 has been previously reported as an oncogene in HCC, but its underlying molecular mechanisms in hepatic disease are not entirely understood, we decided to further explore its activity as KLF4‐binding partner.We started by assessing the interaction between KLF4 and USP11 through co‐immunoprecipitation (co‐IP) analysis in transfected HEK293 cells."

reach
"Therefore, we explored the binding substrate of USP11 in depth.Except for Beclin1 and p53, USP11 can also bind to PPP1CA, p21, NONO, and KLF4, thereby playing a role in cancer, DNA damage, and liver disease by mediating their deubiquitination and stabilization."

reach
"39 , 43 Interestingly, we also found that KLF4/USP11 interaction occurred mainly in the nucleus."

sparser
"USP11 interacts with KLF4 and digests the K63-linked polyubiquitin chain on KLF4 [ xref ]."
GREM1 affects USP11
| 5 2
GREM1 binds USP11.
| 2 2
| 2 2

reach
"However, no research has reported the mechanism underlying GREM1 ubiquitination and the interaction between USP11 and GREM1 so far.Demethyleneberberine (DMB), a natural product, is a component from the rutaceous plant Cortex Phellodendri Chinensis (CPC) with anti-inflammatory, neuroprotective, antioxidant and antimicrobial properties [30,31,32,33]."

reach
"Furthermore, the interaction of USP11 and GREM1 was investigated by co-IP assay, which was performed in the A549 cells."

sparser
"Furthermore, the interaction of USP11 and GREM1 was investigated by co-IP assay, which was performed in the A549 cells."

sparser
"However, no research has reported the mechanism underlying GREM1 ubiquitination and the interaction between USP11 and GREM1 so far."
GREM1 inhibits USP11.
| 3
GREM1 inhibits USP11. 3 / 3
| 3

reach
"Therefore, it is highly possible that DMB promotes GREM1 ubiquitination and degradation by inhibiting USP11 function."

reach
"DMB increased GREM1 ubiquitination, suggesting that DMB could inhibit the function of USP11 and promote GREM1 degradation (Figure 5E)."

reach
"Furthermore, USP11 was revealed to be involved in the deubiquitination of GREM1 in this study and DMB promoted the ubiquitination and degradation of GREM1 by inhibiting USP11."
BRCA1 affects USP11
1 | 3 3
1 | 3 3

sparser
"Collectively, MYCN prevents collisions between transcription and replication by evicting stalling RNAPII from promoter-proximal positions via association with USP11BRCA1 decapping complexes or the RN[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"MYC was able to bind USP11, but unable to promote association of USP11 with BRCA1 ( xref )."

sparser
"The interaction between BRCA1 and USP-11 has not been investigated yet; however a recent study reported that the DSB repair function of USP-11 were independent of the BRCA1 localization [ xref ]."

reach
"In neuroblastoma cells, N-Myc-dependent recruitment of BRCA1 and USP11 to transcriptional pause sites facilitates mRNA de-capping and the release of stalled RNA polymerases, thereby suppressing R-loop accumulation [94]."

reach
"The formation of a MYCN–BRCA1USP11 complex eliminates R-loops at promoters and engages mRNA decapping complexes comprising DCP1A, DCP2, and EDC4."

reach
"The interaction between BRCA1 and USP-11 has not been investigated yet; however a recent study reported that the DSB repair function of USP-11 were independent of the BRCA1 localization [XREF_BIBR]."
USP7 affects PRC1
| 6
USP7 binds USP11 and PRC1. 6 / 6
| 6

sparser
"USP7 and USP11 associate with other PRC1 components."

sparser
"USP7 and USP11 are bound to chromatin and form part of the PRC1 complex."

sparser
"To assess whether USP7 and USP11 associate with bona fide PRC1 complexes, nuclear extracts from FDFs ( xref ) and 293T cells (not shown) were subjected to size exclusion chromatography on a Superose 6 10/300 column, and individual fractions were analysed by SDS–PAGE and immunoblotting."

sparser
"Both USP7 and USP11 interact with PRC1 [ xref ], and these USPs might form a complex [ xref ], suggesting possible inter-USP regulation, the implications of which would be interesting for USP biology."

sparser
"In humans, USP7 and USP11 physically interact with members of PRC1 in vivo , such as Mel18, Bmi1 and Ring1."

sparser
"Our data strongly suggest that USP7 and USP11 bind directly to several components of the PRC1 complex, as confirmed using purified recombinant proteins."
USP11 affects XPC
1 1 | 3 1
USP11 deubiquitinates XPC.
1 | 3
USP11 deubiquitinates XPC. 3 / 4
1 | 3

reach
"Notably, USP11 plays a key role in DNA damage repair depending on its catalytic activity, for example, Xia Ting et al. [20] found that USP11 acts as a histone deubiquitinase in chromatin reorganization during DNA repair, Palak Shah et al. [21] found that USP11 regulates UV-induced DNA damage repair by deubiquitinating XPC, and Tanggang Deng et al. [32] identified that the deubiquitylation and stabilization of p21 by USP11 is essential for cell cycle progression and DNA damage responses."

reach
"USP11 knockdown in HaCaT cells increased ubiquitination of XPC as compared to control cells, suggesting that USP11 is important in maintaining NER capacity, as USP11 mediates XPC deubiquitination at the chromatin following UVB damage [XREF_BIBR]."

reach
"Regulation of XPC deubiquitination by USP11 in repair of UV induced DNA damage."
USP11 binds XPC.
1 | 1
1 | 1

sparser
"In addition, UV radiation induces USP11 translocation to chromatin and USP11-XPC interaction in the XPC ubiquitination dependent manner."
USP11 affects TGFBR
| 5
USP11 deubiquitinates TGFBR.
| 4
USP11 deubiquitinates TGFBR. 4 / 4
| 4

reach
"USP11 is a part of the ubiquitin-specific processing protease (USP) family and is involved in the deubiquitination of type I TGFβ receptor (ALK5) to augment TGFβ signaling [23]."

reach
"USP11 is responsible for deubiquitinating the type I TGF-β receptor, thus regulating TGF-β signaling [43] ."

reach
"USP11 is also involved in the regulation of TGFβ signaling by deubiquitinating the type I TGFβ receptor ( Al-Salihi et al., 2012 )."

reach
"It has been known that the TGF-β receptors can be deubiquitinated and stabilized by USP4, USP15 and USP11 [[18], [19], [20]]."
USP11 activates TGFBR.
| 1
USP11 activates TGFBR. 1 / 2
| 1

reach
"In breast cancer, USP11 promotes the TGF-β-induced epithelial–mesenchymal transition via altering the stability of TGFβ receptor type II [47]."
USP11 affects SMAD6
2 | 1 1
2 | 1 1

sparser
"On the other hand, while SMAD6 also interacts with USP11 strongly, depletion of USP11 did not inhibit BMP signalling."

reach
"On the other hand, while SMAD6 also interacts with USP11 strongly, depletion of USP11 did not inhibit BMP signalling."
USP11 affects PPM1G
| 6
| 2

sparser
"We chose to further investigate the novel interactions of USP7 with DDX24 and DHX40, along with the poorly characterized interactions with USP11 and PPM1G."

sparser
"Like the DDX24 interaction, we showed that interactions with USP11 and PPM1G occurred predominantly through the USP7 TRAF domain."
| 2

sparser
"To determine which binding pocket was used to mediate the interactions with USP11, PPM1G, DHX40, DDX24 and TRIP12, we repeated the myc-USP7 co-IP experiments in CNE2Z cells, using USP7 mutants with D164A,W165A mutations to disrupt the TRAF binding pocket (referred to as DW) or D762R,D764R mutations to disrupt the Ubl2 pocket (referred to as Ubl2)."

sparser
"Comparison of protein recoveries with individual DW and Ubl2 USP7 mutants showed that interactions with PPM1G, USP11, DDX24 and TRIP12 were greatly affected by the DW mutation and much less affected by the Ubl2 mutation, indicating that these proteins all interact predominantly bind USP7 through the TRAF binding pocket."
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
USP11 affects PARP1
2 | 2 1
USP11 binds PARP1.
2 | 1 1
2 | 1 1

reach
"The synthetic lethal interaction between USP11 and PARP uncovered by this work illustrates the potential of proteases as critical players in maintaining cancer cell viability and highlights the special relevance of the ubiquitin-proteasome system in this regard."

sparser
"The synthetic lethal interaction between USP11 and PARP uncovered by this work illustrates the potential of proteases as critical players in maintaining cancer cell viability and highlights the special relevance of the ubiquitin–proteasome system in this regard."
USP11 inhibits PARP1.
| 1
USP11 inhibits PARP1. 1 / 2
| 1

reach
"As shown in XREF_FIG A & B, we observed that elevated expression of wild-type USP11, but not DUB deficient mutant USP11, significantly inhibits activation of caspase-3 and caspase -9, cleavage of PARP1 and anoikis in mammary gland epithelial cells."
USP11 affects NOTCH1
1 | 5
USP11 deubiquitinates NOTCH1.
| 3
USP11 deubiquitinates NOTCH1. 3 / 3
| 3

reach
"As USP7 and USP11 form a complex in T-ALL, future studies are warranted to dissect further the detailed contribution of USP7 and USP11 to NOTCH1 posttranslational regulation and stabilization.We then sought to determine whether USP11 could deubiquitinate NOTCH1 via ubiquitination assays."

reach
"Ectopic expression of wild-type (WT) USP11 decreased the ubiquitination of NOTCH1, whereas USP11 catalytic inactive form partially rescued the ubiquitination of NOTCH1 in 293 T cells (Fig. 2E)."

reach
"We demonstrated that USP11 deubiquitinates NOTCH1."
USP11 binds NOTCH1.
1 | 2
1 | 2

reach
"Immunoprecipitation studies showed that both the catalytically active and inactive forms of USP11 interact with NOTCH1, suggesting the binding of USP11 and NOTCH1 is independent of USP11 deubiquitinase activity (Fig. 2A, B)."

reach
"A previous study showed the potential interaction of USP11 and NOTCH1 in T-ALL cells, suggesting this regulation of NOTCH1 deubiquitination by USP11 might exist in T-ALL as well [8]."
USP11 affects NFkappaB
| 3
USP11 inhibits NFkappaB.
| 1
| 1

reach
"NF-kappaB signaling is negatively regulated by USP11 or USP15 mediated removal of K48 linked ubiquitin chains from IkappaBalpha [XREF_BIBR, XREF_BIBR]."
USP11 activates NFkappaB.
| 2
| 2

reach
"However, down-regulation of USP11 dramatically enhances NF-kappaB activity in response to tumor necrosis factor-alpha, indicating that IKKalpha does not require activation of NF-kappaB."

reach
"USP11 is able to modulate TNF-alpha-induced NF-kappaB activation through regulation of nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor alpha (IkappaBalpha) stability."
USP11 affects Mice
| 6
USP11 activates Mice. 6 / 6
| 6

reach
"Interestingly, previous studies further indicated that USP11 inhibition may protect amyloid aggregation-induced paralysis in C elegans and increase BACE1 degradation in AD model mice (Basic et al, 2021; Wu et al, 2022), which may also contribute to the ameliorated amyloid deposition induced by IsoLiPro.Neuroinflammation plays a pivotal role in the pathology of AD and influences the disease’s progression."

reach
"Compared with those in control mice, both USP11 mRNA and protein levels are significantly increased in the obstructed kidneys of unilateral ureteral obstruction (UUO) model mice [218]."

reach
"In addition, an X factor, USP11, promotes tau modification and pathology in female mice (143)."

reach
"USP11 expression is elevated in disease-free female humans and mice."

reach
"As expected, both soluble and insoluble USP11 levels were significantly elevated (~1.5-fold and ~2.2-fold, respectively) in female tau mice compared to male tau mice (Figures 5J and 5O)."

reach
"USP11 promotes renal tubular cell pyroptosis and fibrosis in UUO mice via inhibiting KLF4 ubiquitin degradation."
USP11 affects MSX1
2 | 4
2 | 4

sparser
"Likewise, we cross-confirmed the interaction between USP11 and MSX1 by ectopically transfecting HA-USP11 and Myc-MSX1 in HEK293 cells."

sparser
"Our results showed that HA-USP11 co-immunoprecipitated with Myc-MSX1 and vice-versa ( xref c), indicating that USP11 interacts with MSX1 protein."

sparser
"Thus, we investigated the functional consequences, particularly related to osteogenic differentiation of the USP11 interaction with MSX1 in hMSCs."

sparser
"We next sought to determine whether USP11 interacts with MSX1 protein within the cells."
USP11 affects MGL
| 6
USP11 binds MGL. 6 / 6
| 6

sparser
"Immunoprecipitation assay was performed with an anti-USP11 antibody and the result showed that interaction between USP11 and Mgl-1 was decreased in knockdown of RanBPM (Figure xref )."

sparser
"This result indicates that RanBPM mediates the interaction between USP11 and Mgl-1."

sparser
"In this study, we demonstrated a direct interaction between USP11 and Mgl-1."

sparser
"In the present study, we identified the interaction between USP11 and Mgl-1."

sparser
"These data indicate that USP11 interacts with Mgl-1, and Mgl-1 has multiple binding sites to USP11."

sparser
"To address whether RanBPM can mediate interaction between USP11 and Mgl-1, we used RanBPM knockdown cells."
USP11 affects GREM1
| 4 2
USP11 binds GREM1.
| 2 2
| 2 2

reach
"However, no research has reported the mechanism underlying GREM1 ubiquitination and the interaction between USP11 and GREM1 so far.Demethyleneberberine (DMB), a natural product, is a component from the rutaceous plant Cortex Phellodendri Chinensis (CPC) with anti-inflammatory, neuroprotective, antioxidant and antimicrobial properties [30,31,32,33]."

reach
"Furthermore, the interaction of USP11 and GREM1 was investigated by co-IP assay, which was performed in the A549 cells."

sparser
"Furthermore, the interaction of USP11 and GREM1 was investigated by co-IP assay, which was performed in the A549 cells."

sparser
"However, no research has reported the mechanism underlying GREM1 ubiquitination and the interaction between USP11 and GREM1 so far."
USP11 deubiquitinates GREM1.
| 2
USP11 deubiquitinates GREM1. 2 / 2
| 2

reach
"Results showed that USP11 overexpression reduced the ubiquitination of GREM1 and that TNF4 and BTRC overexpression had no effect on the ubiquitination of GREM1 (Figure 4A–C)."

reach
"Furthermore, USP11 was revealed to be involved in the deubiquitination of GREM1 in this study and DMB promoted the ubiquitination and degradation of GREM1 by inhibiting USP11."
USP11 affects FLVCR1
| 6
USP11 activates FLVCR1. 6 / 6
| 6

reach
"USP11 Promotes PCa Progression in Part through AR and c-Myc.."

reach
"Here, we showed that USP11 knockdown (KD) inhibits PCa cell growth, regardless of PTEN status, suggesting that USP11 may promote PCa growth by targeting other substrates."

reach
"In two GEO datasets, we observed USP11 mRNA upregulation in metastatic PCa or CRPC relative to primary PCa (Fig. 1 A and B)."

reach
"To determine whether USP11 loss inhibits PCa cell growth via effects on AR and/or c-Myc, we reexpressed AR, c-Myc, or both in USP11-KD VCaP cells to levels seen in control cells (Fig. 6A)."

reach
"These findings indicate that USP11 KD inhibits PCa cell growth regardless of PTEN status and suggest that USP11 targets other substrate(s) to promote PCa cell growth."

reach
"In this study, we find that USP11 promotes PCa cell growth partly through upregulation of the transcription factors AR and c-Myc."
USP11 affects DUSP
| 6
| 6

sparser
"We were successful in producing the USP4-DUSP, USP11-DUSP, USP15-DUSP, USP20-DUSP2 and USP33-DUSP2 recombinant proteins in Escherichia coli and purified them to near homogeneity from the soluble fract[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"DNA sequences encoding the following residues from each USP were cloned into a pET-21b vector using Gibson Assembly 45 : USP4-DUSP, 8–129; USP15-DUSP, 1–125; USP11-DUSP, 71–191; USP20-DUSP1, 687–780; [MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"One of five UbVs selected for binding to USP11-DUSP exhibited slight cross-reactivity to USP15-DUSP (11D."

sparser
"5), but the other three appeared to be absolutely specific for USP11-DUSP (11D."

sparser
"For USP15-DUSP and USP33-DUSP2, the best UbVs exhibited affinities in the low nanomolar range (K D ∼ 10 nM), whereas for USP11-DUSP and USP20-DUSP2, affinities were in the mid-nanomolar range (K D ∼ 1[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"2 binding to the USP11-DUSP ( Figure 5 (B)) or UbV."
USP11 bound to TCEAL1 activates DNA-templated transcription. 2 / 2
| 2

reach
"In neuroblastoma, USP11- and TCEAL1-dependent genes define a gene expression program that is characteristic for mesenchymal tumors, which are described as able to escape from many treatments, suggesting that the USP11/TCEAL1 complex promotes transcription elongation to support a critical oncogenic gene expression program."

reach
"The USP11/TCEAL1 complex promotes transcription elongation to sustain oncogenic gene expression in neuroblastoma."

reach
"These findings collectively indicate that USP11 enhances the transcription of POMC and promotes ACTH secretion."

reach
"Both USP11 and TCEAL1 promote transcription elongation and maintain expression of RPB8, an essential subunit of all three nuclear RNA polymerases."

reach
"Lisa Dwane et al. [36] identified USP11 as a novel transcriptional regulator of ERα in breast cancer through a functional genomic screen, and they found that USP11 could significantly inhibit the activity of ERα and the transcription of downstream target genes in response to estradiol stimulation."

reach
"Thus, it is likely that USP4 and USP11 would have a similar function on YY1 stability and inhibit HIV-1 transcription."

reach
"However, the precise mechanism by which USP11 promotes EMT and metastasis in hepatocellular carcinoma (HCC) is not fully understood."

reach
"Sheng Zhang et al. [86] identified that USP11 served as a marker of poor prognosis and promoted metastasis in hepatocellular carcinoma."

reach
"Changmao Zhang et al. [88] identified that USP11 promoted the proliferation and metastasis of hepatocellular carcinoma via deubiquitinating NF90, which was also proved to promote the proliferation and angiogenesis of cervical cancer."

reach
"Furthermore, Heeyoung Yang et al. [30] identified that USP11 promotes the proliferation, tumorigenesis, and sorafenib-resistance of hepatocellular carcinoma via negatively regulating KLF4, which was known as a tumor suppressor factor in previous researches."

reach
"On the other hand, USP11 significantly stimulates proliferation and metastasis of hepatocellular carcinoma cells both in vitro and in vivo [34]."

reach
"USP11 potentiates HGF/AKT signaling and drives metastasis in hepatocellular carcinoma."
USP11 affects BECN1
| 6
USP11 deubiquitinates BECN1.
| 3
USP11 deubiquitinates BECN1. 3 / 3
| 3

reach
"It has been reported that USP11 promotes autophagy activation and induces ferroptosis by deubiquitinating and stabilizing Beclin 1, thereby regulating spinal cord ischemia-reperfusion injury (Rong et al., 2022)."

reach
"USP11 regulates autophagy-dependent ferroptosis after spinal cord ischemia-reperfusion injury by deubiquitinating Beclin 1."

reach
"Recent research has shown that ubiquitin-specific peptidase 11 (USP11) regulates autophagy-dependent ferroptosis in response to spinal cord ischemia-reperfusion injury by deubiquitinating Beclin 1."
USP11 activates BECN1.
| 3
USP11 activates BECN1. 3 / 3
| 3

reach
"Rong et al. [23] demonstrated that increased expression of USP11 in neurons after SCI promotes functional recovery after injury by stabilizing Beclin1."

reach
"Importantly, USP11 promotes autophagy activation by stabilizing Beclin 1, thereby leading to ferroptosis."

reach
"Furthermore, the deubiquitinating enzyme USP11 promotes autophagy-dependent ferroptosis by stabilizing BECN1, leading to ferroptosis-mediated spinal cord ischemia-reperfusion injury [163]."
USP11 affects ATAD5
| 4 2
| 4 2

reach
"Additionally, ATAD5 specifically binds to USP7 and USP11."

sparser
"Immunoprecipitation experiments with ATAD5 deletion variants showed that USP11 binds to the N terminus of ATAD5, ATAD5 (1 to 240) ( xref )."

sparser
"In the case of USP11, the catalytic domain of USP11 (295 to 963) interacted with ATAD5 ()."

reach
"Next, we validated the interaction between ATAD5 and USP7 or USP11 using immuno-precipitation (Fig. 6B and SI Appendix, Fig. S6 B and C)."

reach
"These findings suggest that USP7–USP11 binds to ATAD5 through motifs distinct from the UAF1-binding motif.We next investigated whether ATAD5 enhances the deubiquitination of Ub–PCNA by USP7 and USP11 (Fig. 6 D–G and SI Appendix, Fig. S6 K–P)."

reach
"USP7 and USP11 may associate transiently with the ATAD5–UAF1–USP1 complex."
SMAD6 affects USP11
2 | 1 1
2 | 1 1

sparser
"On the other hand, while SMAD6 also interacts with USP11 strongly, depletion of USP11 did not inhibit BMP signalling."

reach
"On the other hand, while SMAD6 also interacts with USP11 strongly, depletion of USP11 did not inhibit BMP signalling."
RSL3 affects USP11
| 6
RSL3 inhibits USP11.
| 2
RSL3 inhibits USP11. 2 / 2
| 2

reach
"The mechanism is that RSL3 was able to directly bind to USP11, a recently identified de-ubiquitinase of NRF2, and inactivate USP11 protein to induce NRF2 protein ubiquitination and degradation in KLK LUAD cells."

reach
"In addition, RSL3 was able to directly bind to USP11, a recently identified de-ubiquitinase of NRF2, and inactivate USP11 protein to induce NRF2 protein ubiquitination and degradation in KLK LUAD cells."
RSL3 binds USP11.
| 2
RSL3 binds USP11. 2 / 2
| 2

reach
"This process occurs through the direct binding of RSL3 to USP11, resulting in its inactivation and subsequent induction of ubiquitination and degradation of NRF2 protein in these cells [122]."

reach
"Since USP11 is an enzyme having an active site with cysteine, we speculated that RSL3 might bind to USP11 to inhibit its activity in cells."
RSL3 activates USP11.
| 2
RSL3 activates USP11. 2 / 2
| 2

reach
"Our study revealed that RSL3 promotes ferroptosis in A549 and H2122 cells by directly inhibiting USP11-mediated de-ubiquitination and promoting degradation of NRF2, thereby repressing transcription of SLC7A11 and GCL [68]."

reach
"In this study, we described that by restricting USP11 activity, RSL3 inhibited NRF2-GSH axis, in parallel to GPX4 inhibition, to induce KLK LUAD cell ferroptosis."
PRC1 affects USP7
| 6
USP7 binds USP11 and PRC1. 6 / 6
| 6

sparser
"USP7 and USP11 associate with other PRC1 components."

sparser
"USP7 and USP11 are bound to chromatin and form part of the PRC1 complex."

sparser
"To assess whether USP7 and USP11 associate with bona fide PRC1 complexes, nuclear extracts from FDFs ( xref ) and 293T cells (not shown) were subjected to size exclusion chromatography on a Superose 6 10/300 column, and individual fractions were analysed by SDS–PAGE and immunoblotting."

sparser
"Both USP7 and USP11 interact with PRC1 [ xref ], and these USPs might form a complex [ xref ], suggesting possible inter-USP regulation, the implications of which would be interesting for USP biology."

sparser
"In humans, USP7 and USP11 physically interact with members of PRC1 in vivo , such as Mel18, Bmi1 and Ring1."

sparser
"Our data strongly suggest that USP7 and USP11 bind directly to several components of the PRC1 complex, as confirmed using purified recombinant proteins."
PPM1G affects USP11
| 6
| 2

sparser
"We chose to further investigate the novel interactions of USP7 with DDX24 and DHX40, along with the poorly characterized interactions with USP11 and PPM1G."

sparser
"Like the DDX24 interaction, we showed that interactions with USP11 and PPM1G occurred predominantly through the USP7 TRAF domain."
| 2

sparser
"To determine which binding pocket was used to mediate the interactions with USP11, PPM1G, DHX40, DDX24 and TRIP12, we repeated the myc-USP7 co-IP experiments in CNE2Z cells, using USP7 mutants with D164A,W165A mutations to disrupt the TRAF binding pocket (referred to as DW) or D762R,D764R mutations to disrupt the Ubl2 pocket (referred to as Ubl2)."

sparser
"Comparison of protein recoveries with individual DW and Ubl2 USP7 mutants showed that interactions with PPM1G, USP11, DDX24 and TRIP12 were greatly affected by the DW mutation and much less affected by the Ubl2 mutation, indicating that these proteins all interact predominantly bind USP7 through the TRAF binding pocket."
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
| 1 5

reach
"USP11 was able to bind and deubiquitinate NP, thereby antagonizing viral replication [XREF_BIBR]."

sparser
"USP11 was able to bind and deubiquitinate NP, thereby antagonizing viral replication [ xref ]."

sparser
"The experimental protocol was as described above. (D) The interaction between USP11 and NP."
| 3

sparser
"The co-immunoprecipitation results showed that USP11 interacts with PB2, PA and NP, respectively."

sparser
"USP11 specifically interacts with PB2, PA and NP. (A) The interaction of USP11 with singly expressed viral proteins."

sparser
"Conversely, cellular deubiquitinase USP11 can interact with PB2, PA and NP, and thereby affect the function of RNP complex during RNA replication."
MSX1 affects USP11
2 | 4
2 | 4

sparser
"Likewise, we cross-confirmed the interaction between USP11 and MSX1 by ectopically transfecting HA-USP11 and Myc-MSX1 in HEK293 cells."

sparser
"Our results showed that HA-USP11 co-immunoprecipitated with Myc-MSX1 and vice-versa ( xref c), indicating that USP11 interacts with MSX1 protein."

sparser
"Thus, we investigated the functional consequences, particularly related to osteogenic differentiation of the USP11 interaction with MSX1 in hMSCs."

sparser
"We next sought to determine whether USP11 interacts with MSX1 protein within the cells."
MGL affects USP11
| 6
USP11 binds MGL. 6 / 6
| 6

sparser
"Immunoprecipitation assay was performed with an anti-USP11 antibody and the result showed that interaction between USP11 and Mgl-1 was decreased in knockdown of RanBPM (Figure xref )."

sparser
"This result indicates that RanBPM mediates the interaction between USP11 and Mgl-1."

sparser
"In this study, we demonstrated a direct interaction between USP11 and Mgl-1."

sparser
"In the present study, we identified the interaction between USP11 and Mgl-1."

sparser
"These data indicate that USP11 interacts with Mgl-1, and Mgl-1 has multiple binding sites to USP11."

sparser
"To address whether RanBPM can mediate interaction between USP11 and Mgl-1, we used RanBPM knockdown cells."
DUSP affects USP11
| 6
| 6

sparser
"We were successful in producing the USP4-DUSP, USP11-DUSP, USP15-DUSP, USP20-DUSP2 and USP33-DUSP2 recombinant proteins in Escherichia coli and purified them to near homogeneity from the soluble fract[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"DNA sequences encoding the following residues from each USP were cloned into a pET-21b vector using Gibson Assembly 45 : USP4-DUSP, 8–129; USP15-DUSP, 1–125; USP11-DUSP, 71–191; USP20-DUSP1, 687–780; [MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"One of five UbVs selected for binding to USP11-DUSP exhibited slight cross-reactivity to USP15-DUSP (11D."

sparser
"5), but the other three appeared to be absolutely specific for USP11-DUSP (11D."

sparser
"For USP15-DUSP and USP33-DUSP2, the best UbVs exhibited affinities in the low nanomolar range (K D ∼ 10 nM), whereas for USP11-DUSP and USP20-DUSP2, affinities were in the mid-nanomolar range (K D ∼ 1[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"2 binding to the USP11-DUSP ( Figure 5 (B)) or UbV."
ATAD5 affects USP11
| 4 2
| 4 2

reach
"Additionally, ATAD5 specifically binds to USP7 and USP11."

sparser
"Immunoprecipitation experiments with ATAD5 deletion variants showed that USP11 binds to the N terminus of ATAD5, ATAD5 (1 to 240) ( xref )."

sparser
"In the case of USP11, the catalytic domain of USP11 (295 to 963) interacted with ATAD5 ()."

reach
"Next, we validated the interaction between ATAD5 and USP7 or USP11 using immuno-precipitation (Fig. 6B and SI Appendix, Fig. S6 B and C)."

reach
"These findings suggest that USP7–USP11 binds to ATAD5 through motifs distinct from the UAF1-binding motif.We next investigated whether ATAD5 enhances the deubiquitination of Ub–PCNA by USP7 and USP11 (Fig. 6 D–G and SI Appendix, Fig. S6 K–P)."

reach
"USP7 and USP11 may associate transiently with the ATAD5–UAF1–USP1 complex."
Lsh affects USP11
| 5
Lsh binds USP11. 5 / 5
| 5

sparser
"The interaction between USP11 and LSH decreased with the duration of erastin treatment, and the reduction in interaction was significant at 8 hours when the level of LSH was not significantly affected (Fig. xref )."

sparser
"These results suggest that erastin disrupts the interaction between LSH and USP11, leading to increased ubiquitination and subsequent degradation of LSH."

sparser
"LSH associates with USP11."

sparser
"Moreover, Co-IP experiments confirmed an obvious interaction between LSH and USP11, primarily within the nuclei of HCT116 cells (Fig. xref )."

sparser
"Furthermore, the GST pull-down assay showed that LSH directly interacts with USP11 through its amino terminus (Fig. xref )."
Ubiquitin affects USP11
| 2 3
Ubiquitin binds USP11.
| 3

sparser
"USP11 Asn 313 in the CCL region interacts with the carbonyl group of the Ub-GGG Gly 76 and USP11 Asn 316 forms a hydrogen-bonding interaction with Ub-GGG Gly 78 ."

sparser
"BL1 loop conformations also differ associated with the substrate-binding status ( xref , B and D ): USP11 Phe 831 interacts with Ub-GGG Leu 71 and Leu 73 ."

sparser
"The experiments revealed that the USP11 DU domains do not bind ubiquitin with detectable affinities (Figure S4, xref ) or affect the catalytic efficiency of the enzyme using ubiquitin-AMC as substrate (Figure xref )."
Ubiquitin activates USP11.
| 2
| 2

reach
"Furthermore, the ubiquitin levels of eIF4B were noted to be minimally enhanced in TMD8 cells overexpressing USP11 and treated with C75 compared to either GFP infected or USP11 CS infected corresponding treated cells."

reach
"However, USP11 FL features a ' burst ' phase (XREF_SUPPLEMENTARY), indicating that, in contrast to USP4 FL and USP15 FL, slow ubiquitin off-rates limit USP11 activity but the DUSP-Ubl domain is not able to promote ubiquitin release or is not efficient in doing so, in agreement with a recent publication XREF_BIBR."
USP11 affects viral RNA replication
| 5
USP11 inhibits viral RNA replication. 5 / 5
| 5

eidos
"In addition , USP11 also can interact with viral PB2 and PA protein , thereby inhibiting viral RNA replication ."

eidos
"When cellular USP11 was knocked down , the amounts of vRNA and cRNA of the wild-type virus increased by about 2.5-fold ( Figure 7A , lane 1 versus lanes 2 and 3 ) , indicating that USP11 inhibits viral RNA replication as previously mentioned ; with the mutant virus defective in NP ubiquitination ( K184R ) , however , there was no significant difference in viral RNA synthesis between USP11 knockdown and control cells ( Figure 7A , lanes 4-6 ) ."

eidos
"These results combined suggest that USP11 inhibits viral RNA replication through deubiquitinating NP ."

eidos
"This result further supports the conclusion that USP11 inhibits viral RNA replication through deubiquitinating NP ."

eidos
"USP11 inhibits viral RNA replication through deubiquitinating on K184 of NP ."
USP11 affects lsh
| 5
Lsh binds USP11. 5 / 5
| 5

sparser
"The interaction between USP11 and LSH decreased with the duration of erastin treatment, and the reduction in interaction was significant at 8 hours when the level of LSH was not significantly affected (Fig. xref )."

sparser
"These results suggest that erastin disrupts the interaction between LSH and USP11, leading to increased ubiquitination and subsequent degradation of LSH."

sparser
"LSH associates with USP11."

sparser
"Moreover, Co-IP experiments confirmed an obvious interaction between LSH and USP11, primarily within the nuclei of HCT116 cells (Fig. xref )."

sparser
"Furthermore, the GST pull-down assay showed that LSH directly interacts with USP11 through its amino terminus (Fig. xref )."

reach
"Roman Istomine et al. [114] found that USP11 potentiates TGF-β signaling in CD4 T cells to facilitate Foxp3 regulatory T and Th17 cell differentiation."

reach
"USP11 can stabilize the Msh homeobox 1 (MSX1) protein to upregulate the expression of osteogenic differentiation-related markers in human MSCs, consequently enhancing osteogenic differentiation (63)."

reach
"Interestingly, depletion of another BRCA1-interacting protein, BRCA2, results in defects of DNA repair but not that of differentiation in mammary cells (14), which suggests that not all intrinsic DNA repair defects induced by deficiency of BRCA1-interacting proteins promote or are associated with aberrant differentiation.In this study, we discovered that loss of USP11 reduced the expression of E-cadherin and induced DNA damage in MECs and that overexpression of USP11 promoted luminal differentiation, enhanced DNA damage repair, and suppressed tumorigenesis."

reach
"We show that Sox11 overexpression rescues the defects in RGC differentiation and neuronal migration caused by Usp11 deficiency, which supports the contribution of Sox11 stabilization to the effects of Usp11 on cortical development."

reach
"Additionally, differentiation studies revealed reduced calcification and alkaline phosphatase activity in USP11-depleted cells, while overexpression of USP11 enhanced the differentiation potential of hMSCs."
USP11 affects TRAF3
| 2 3
| 2 3

sparser
"Co-immunoprecipitation and ubiquitination assays were performed to analyze for USP11 interacting with TRAF3."

sparser
"The binding of USP11 to TRAF3 was then determined."

sparser
"Furthermore, USP11 and TRAF3 binding was verified by the co-IP assay in H9C2 cells ( xref )."

reach
"The binding of USP11 to TRAF3 was then determined."

reach
"Furthermore, USP11 and TRAF3 binding was verified by the co-IP assay in H9C2 cells (Figure 5c)."
USP11 affects SPRYD3
2 | 3
2 | 3

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."

reach
"Independent reciprocal IPs using Flag- and hemagglutinin (HA)-tagged versions of the proteins transiently expressed in 293T cells, confirmed the interaction between USP11, RAE1, SPRYD3 and KCTD6 (XREF_FIG)."

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."
USP11 affects SMURF2
| 3 2
USP11 leads to the ubiquitination of SMURF2. 5 / 5
| 3 2

sparser
"USP11 enhanced SMURF2 ubiquitination, indicating that the effect of USP11 on SMURF2 function is indirect ( xref )."

reach
"USP11 enhanced SMURF2 ubiquitination, indicating that the effect of USP11 on SMURF2 function is indirect (XREF_FIG)."

sparser
"TRAF4 and USP11 promote Smurf2 ubiquitination, resulting in its degradation."

reach
"TRAF4 and USP11 promote Smurf2 ubiquitination, resulting in its degradation."

reach
"USP15 appears to target key residues within the HECT domain of SMURF2 thereby limiting the catalytic activity of SMURF2 towards it 's substrates, while USP11 appears to increase overall SMURF2 ubiquit[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
USP11 affects SETDB1
1 1 | 1 2
1 1 | 1 2

reach
"The ubiquitination status might be due to the interaction between SETDB1 and USP11."

sparser
"The ubiquitination status might be due to the interaction between SETDB1 and USP11."

sparser
"Coimmunoprecipitation analysis showed that USP11 was able to interact with SETDB1, EIF4G, RPS3, SF3B1, and EZH2 ( xref E ), indicating that USP11 and SETDB1 form complexes with other proteins."
USP11 affects RRM1
| 5
| 5

reach
"Here, we found that there is an interaction between RRM1 and USP11 (Fig. 4B), primarily occurring in the cytoplasm (Fig. 4E)."

reach
"Thus, we propose that the interaction between RRM1 and USP11 promotes USP11 migration from the cytoplasm to the nucleus."

reach
"These results suggest that irradiation induces RRM1 transport into the nucleus, and the interaction between RRM1 and USP11 aids in facilitating the association between USP11 and NPC, thereby promoting USP11’s nuclear translocation."

reach
"Deletion of the C-terminus (731–793) significantly disrupted the interaction between RRM1 and USP11/LaminB1(Fig. 6E), as confirmed by immunofluorescence showing impaired recruitment to LaminB1 after irradiation (Fig. 6H)."

reach
"Furthermore, by demonstrating the direct interaction between RRM1 and USP11, our research has linked RRM1 to RAD51AP1 and elucidated how this interaction promotes E2F1-dependent RAD51AP1 expression (Fig. 7)."
USP11 affects RNF4
1 | 4
1 | 4

sparser
"Additionally, a potential effect of the DNA damaging agent methyl methanesulfonate (MMS) on the interaction between RNF4 and USP11 was investigated, as MMS is known to cause disassembly of the nuclear bodies harboring RNF4 ( xref )."

sparser
"After RNF4-FLAG IP, we found that endogenous USP11 interacted specifically with RNF4, with no signal detectable in the control ( xref )."

sparser
"There was no indication that the interaction between RNF4 and USP11 is disrupted upon treating the cells with MMS."

sparser
"In agreement with the mass spectrometry findings, free SUMO was detected only in the total lysates, a direct result of the SENPs removing all SUMO from target proteins following lysis, indicating that the interaction between USP11 and RNF4 is SUMOylation-independent ( xref )."
| 5

reach
"Conversely, overexpression of USP11 specifically inhibited viral genomic RNA replication, and this inhibition required the deubiquitinase activity."

reach
"When cellular USP11 was knocked down, the amounts of vRNA and cRNA of the wild-type virus increased by about 2.5-fold ( Figure 7A, lane 1 versus lanes 2 and 3) , indicating that USP11 inhibits viral RNA replication as previously mentioned; with the mutant virus defective in NP ubiquitination (K184R), however, there was no significant difference in viral RNA synthesis between USP11 knockdown and control cells ( Figure 7A, lanes 4-6) ."

reach
"This result further supports the conclusion that USP11 inhibits viral RNA replication through deubiquitinating NP.Ubiquitination is a posttranslational modification, in which ubiquitin chains or single ubiquitin molecules are linked to target proteins, giving rise to poly-or monoubiquitination (Weissman, 2001) ."

reach
"Significantly, USP11 can cleave single ubiquitin from NP, and thereby inhibit the RNA replication efficiency ( Figure 8B )."

reach
"USP11 inhibits viral RNA replication through deubiquitinating on K184 of NP."
USP11 affects POMC
| 5
USP11 increases the amount of POMC. 5 / 5
| 5

reach
"Similarly, knockdown of USP11 led to a reduction in POMC protein expression (Fig. 2B), and suppressed Pomc transcription without affecting Tpit transcription (Fig. 2C, Supplementary Fig. 2B)."

reach
"To clarify the molecular mechanism by which USP11 regulates POMC transcription and ACTH secretion, we performed coimmunoprecipitation (Co-IP) and mass spectrometry (MS) experiments to identify potential proteins associated with USP11 in corticotropin cells."

reach
"Experimental data indicate that USP11 promotes the transcription of proopiomelanocortin (POMC) and the secretion of ACTH."

reach
"USP11 promotes POMC transcription and ACTH secretion."

reach
"Additionally, qPCR analysis indicated that USP11 enhanced the Pomc transcription without affecting the transcription of Tpit in AtT-20 cells (Fig. 2A, Supplementary Fig. 2A)."
USP11 affects PB2
| 5
| 3

sparser
"The co-immunoprecipitation results showed that USP11 interacts with PB2, PA and NP, respectively."

sparser
"USP11 specifically interacts with PB2, PA and NP. (A) The interaction of USP11 with singly expressed viral proteins."

sparser
"Conversely, cellular deubiquitinase USP11 can interact with PB2, PA and NP, and thereby affect the function of RNP complex during RNA replication."
USP11 binds PB2. 2 / 2
| 2

sparser
"Furthermore, we showed that USP11 interacted with PB2, PA, and NP of viral RNA replication complex, and that NP is a monoubiquitinated protein and can be deubiquitinated by USP11 in vivo."

sparser
"Immunoprecipitated proteins were separated and then visualized by immunoblot with anti-myc and anti-HA antibody. (B) The interaction between USP11 and PB2."
USP11 affects MTOR
2 | 3
USP11 binds MTOR.
2 | 1
2 | 1

reach
"In addition, USP11 interacts with and stabilizes the serine/threonine kinase mTOR, thereby further contributing to the regulation of autophagy induction."
USP11 inhibits MTOR.
| 2
USP11 inhibits MTOR. 2 / 2
| 2

reach
"Moreover, E2F1 and USP11 inhibited autophagy by regulating ERK and mTOR pathway."

reach
"The E2F1 and USP11 positive feedback loop promotes hepatocellular carcinoma metastasis and inhibits autophagy by activating ERK and mTOR pathway."
USP11 affects MLF2
2 | 3
2 | 3

sparser
"To validate the interaction between USP11 and MLF2, HEK293T cells co-transfected with FLAG-MLF2 and MYC-USP11 were used for immunoprecipitation; the results showed that MLF2 intensively interacted wit[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"Additionally, ubiquitin specific peptidase 11 (USP11) associates with MLF2 and stabilizes the protein."

sparser
"Although only one peptide was identified, we further studied and validated the interaction between USP11 and MLF2."
| 5
| 3

reach
"15 It has been demonstrated that USP11 promotes colorectal cancer and HCC growth and metastasis by stabilizing NF90 and activating the ERK/MAPK signalling pathway."

reach
"Taken together, our data indicate that USP11 positively regulates the ERK/MAPK signaling pathways in a PPP1CA-dependent manner.3.7 PPP1CA is indispensable for USP11-mediated promotion of CRC."

reach
"The findings of the present study contribute to the search for novel biomarkers related to the RAS/RAF/MAPK pathway, and may provide useful information regarding the best strategy for mCRC treatment and may improve the prognosis of patients with advanced stage CRC.In summary, the present study demonstrated that USP11 activated the ERK/MAPK signaling pathway by stabilizing PPP1CA during the development of CRC."
USP11 bound to PPP1CA activates MAPK cascade. 2 / 2
| 2

reach
"The USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway (Sun et al., 2019)."

reach
"Moreover, the USP11/PPP1CA complex promoted CRC progression by activating the ERK/MAPK signaling pathway."
USP11 affects KLF2
| 4 1
USP11 decreases the amount of KLF2.
| 3
USP11 decreases the amount of KLF2. 3 / 3
| 3

reach
"As reflected by western blot and qRT-PCR assays, USP11 knockdown led to upregulated expression of KLF2, as well as downregulated levels of NF-κB (p65), its phosphorylation (p-p65), and downstream markers of the NF-κB pathway (cyclinD1, c-myc) in the brain tissues of rats with ICH-like symptoms; these effects of USP11 knockdown alone could be reversed by its combination with either p53 overexpression or KLF2 knockdown (Figure 5A)."

reach
"USP11 stabilizes p53 by deubiquitination and inhibits KLF2 expression in microglial cells."

reach
"The above results convinced us that USP11 could deubiquitinate and stabilize p53 in microglial cells to repress KLF2 transcription."
USP11 inhibits KLF2.
| 1 1
USP11 inhibits KLF2. 2 / 2
| 1 1

sparser
"Collectively, USP11 inhibits KLF2 via upregulating p53, thus facilitating the ICH-induced neurological impairment and inflammation."

reach
"A pro-inflammatory mediator USP11 enhances the stability of p53 and inhibits KLF2 in intracerebral hemorrhage."
USP11 affects KEAP1
3 | 1 1
3 | 1 1

reach
"KEAP1 physically interacts with USP11 22, a deubiquitylase that also interacts with BRCA2 23 and PALB2 (XREF_FIG)."

sparser
"Intriguingly, KEAP1-USP11 defective tumor cells exhibit BRCAness phenotype, i.e., alteration of R-loops homeostasis, DNA damage, and higher sensitivity to PARP inhibitors [ xref , xref ]."
USP11 affects KCTD6
2 | 3
2 | 3

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."

reach
"Independent reciprocal IPs using Flag- and hemagglutinin (HA)-tagged versions of the proteins transiently expressed in 293T cells, confirmed the interaction between USP11, RAE1, SPRYD3 and KCTD6 (XREF_FIG)."

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."
USP11 affects IL6
| 1 3 1
USP11 increases the amount of IL6.
| 2 1
USP11 increases the amount of IL6. 3 / 3
| 2 1

reach
"In the LPS-treated model, USP11 promoted IL-6 transcription and inhibited IL-6 degradation."

reach
"These results suggest that USP11 could affect IL-6 transcription but not mainly through the NF- κ B pathway in our model.Next, we investigated the effect of USP11 on the ubiquitination of IL-6, and fo[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"All these findings indicate that, in our aGvHD model, the effect of IL-6 transcription by USP11 may not mainly through the NF- κ B pathway."
USP11 inhibits IL6.
| 1 1
USP11 inhibits IL6. 2 / 2
| 1 1

eidos
"In addition , USP11 also inhibited IL-6 degradation by affecting IL-6 ubiquitination ."

reach
"In vitro , IL-6 mRNA increased when USP11 was overexpressed, while knockdown of USP11 or treatment with mitoxantrone decreased IL-6 mRNA."
USP11 affects HIF
| 5
USP11 binds HIF.
| 3
| 3

reach
"These results demonstrated that USP11 affects the stability of the HIF‐1α protein.To further reveal the potential interaction between USP11 and HIF‐1α, a Co‐IP assay was performed."

reach
"7 , 16 We examined the relationship between USP11 and HIF‐1α using the GEPIA (TCGA) database and found a positive association between USP11 and HIF‐1α in HCC (p < 0.05) (Figure 5B)."

reach
"A strong positive association between HIF‐1α and USP11 was found, as illustrated in Figure 5A."
USP11 deubiquitinates HIF.
| 2
USP11 deubiquitinates HIF. 2 / 2
| 2

reach
"The ubiquitination assay further substantiated that USP11 knockdown significantly increased poly‐ubiquitination of HIF‐1α under normoxic and hypoxic conditions (Figure 2B)."

reach
"The deubiquitination of HIF‐1α by USP11 stabilized the HIF‐1α protein and promoted HCC cell glycolysis through LDHA and PDK1 pathways."
TRAF3 affects USP11
| 2 3
| 2 3

sparser
"Co-immunoprecipitation and ubiquitination assays were performed to analyze for USP11 interacting with TRAF3."

sparser
"The binding of USP11 to TRAF3 was then determined."

sparser
"Furthermore, USP11 and TRAF3 binding was verified by the co-IP assay in H9C2 cells ( xref )."

reach
"The binding of USP11 to TRAF3 was then determined."

reach
"Furthermore, USP11 and TRAF3 binding was verified by the co-IP assay in H9C2 cells (Figure 5c)."
SREBF1 affects USP11
| 3 2
| 3 2

sparser
"USP11 directly interacts with SREBF1, and its silencing leads to the disruption of SREBF1 stabilization through K48-linked deubiquitination and degradation."

sparser
"Importantly, the truncated mutant USP11 (503-938 aa) interacts with the truncated mutant SREBF1 (569-1147aa), with K1151 playing a crucial role in this interaction."

reach
"Consistent with the mass spectrometry results, Co-IP assays demonstrated interactions between endogenous SREBF1 and USP11 in HCC-LM3, HepG2, and Huh7 cells (Fig. 1B)."

reach
"The aforementioned studies demonstrate an interaction between USP11 and the key lipid metabolism regulator SREBF1, with previous research suggesting that USP11 may be associated with cancer metabolism."

reach
"We further demonstrated that USP11 directly binds to and stabilizes SREBF1."
SPRYD3 affects USP11
2 | 3
2 | 3

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."

reach
"Independent reciprocal IPs using Flag- and hemagglutinin (HA)-tagged versions of the proteins transiently expressed in 293T cells, confirmed the interaction between USP11, RAE1, SPRYD3 and KCTD6 (XREF_FIG)."

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."
SETDB1 affects USP11
1 1 | 1 2
1 1 | 1 2

reach
"The ubiquitination status might be due to the interaction between SETDB1 and USP11."

sparser
"The ubiquitination status might be due to the interaction between SETDB1 and USP11."

sparser
"Coimmunoprecipitation analysis showed that USP11 was able to interact with SETDB1, EIF4G, RPS3, SF3B1, and EZH2 ( xref E ), indicating that USP11 and SETDB1 form complexes with other proteins."
RRM1 affects USP11
| 5
| 5

reach
"Here, we found that there is an interaction between RRM1 and USP11 (Fig. 4B), primarily occurring in the cytoplasm (Fig. 4E)."

reach
"Thus, we propose that the interaction between RRM1 and USP11 promotes USP11 migration from the cytoplasm to the nucleus."

reach
"These results suggest that irradiation induces RRM1 transport into the nucleus, and the interaction between RRM1 and USP11 aids in facilitating the association between USP11 and NPC, thereby promoting USP11’s nuclear translocation."

reach
"Deletion of the C-terminus (731–793) significantly disrupted the interaction between RRM1 and USP11/LaminB1(Fig. 6E), as confirmed by immunofluorescence showing impaired recruitment to LaminB1 after irradiation (Fig. 6H)."

reach
"Furthermore, by demonstrating the direct interaction between RRM1 and USP11, our research has linked RRM1 to RAD51AP1 and elucidated how this interaction promotes E2F1-dependent RAD51AP1 expression (Fig. 7)."
RNF4 affects USP11
1 | 4
1 | 4

sparser
"Additionally, a potential effect of the DNA damaging agent methyl methanesulfonate (MMS) on the interaction between RNF4 and USP11 was investigated, as MMS is known to cause disassembly of the nuclear bodies harboring RNF4 ( xref )."

sparser
"After RNF4-FLAG IP, we found that endogenous USP11 interacted specifically with RNF4, with no signal detectable in the control ( xref )."

sparser
"There was no indication that the interaction between RNF4 and USP11 is disrupted upon treating the cells with MMS."

sparser
"In agreement with the mass spectrometry findings, free SUMO was detected only in the total lysates, a direct result of the SENPs removing all SUMO from target proteins following lysis, indicating that the interaction between USP11 and RNF4 is SUMOylation-independent ( xref )."
PCGF2 affects USP11
3 | 2
3 | 2

reach
"Although the co-precipitation data implied that both USP7 and USP11 can interact with MEL18 and BMI1, they did not address whether this occurred within the context of a canonical PRC1 complex."

reach
"In view of the co-precipitation and size fractionation data, it was of interest to know whether USP7 and USP11 interact directly with MEL18 and BMI1 or other PRC1 components."
PB2 affects USP11
| 5
| 3

sparser
"The co-immunoprecipitation results showed that USP11 interacts with PB2, PA and NP, respectively."

sparser
"USP11 specifically interacts with PB2, PA and NP. (A) The interaction of USP11 with singly expressed viral proteins."

sparser
"Conversely, cellular deubiquitinase USP11 can interact with PB2, PA and NP, and thereby affect the function of RNP complex during RNA replication."
USP11 binds PB2. 2 / 2
| 2

sparser
"Furthermore, we showed that USP11 interacted with PB2, PA, and NP of viral RNA replication complex, and that NP is a monoubiquitinated protein and can be deubiquitinated by USP11 in vivo."

sparser
"Immunoprecipitated proteins were separated and then visualized by immunoblot with anti-myc and anti-HA antibody. (B) The interaction between USP11 and PB2."
MLF2 affects USP11
2 | 3
2 | 3

sparser
"To validate the interaction between USP11 and MLF2, HEK293T cells co-transfected with FLAG-MLF2 and MYC-USP11 were used for immunoprecipitation; the results showed that MLF2 intensively interacted wit[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"

sparser
"Additionally, ubiquitin specific peptidase 11 (USP11) associates with MLF2 and stabilizes the protein."

sparser
"Although only one peptide was identified, we further studied and validated the interaction between USP11 and MLF2."
KEAP1 affects USP11
3 | 1 1
3 | 1 1

reach
"KEAP1 physically interacts with USP11 22, a deubiquitylase that also interacts with BRCA2 23 and PALB2 (XREF_FIG)."

sparser
"Intriguingly, KEAP1-USP11 defective tumor cells exhibit BRCAness phenotype, i.e., alteration of R-loops homeostasis, DNA damage, and higher sensitivity to PARP inhibitors [ xref , xref ]."
KCTD6 affects USP11
2 | 3
2 | 3

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."

reach
"Independent reciprocal IPs using Flag- and hemagglutinin (HA)-tagged versions of the proteins transiently expressed in 293T cells, confirmed the interaction between USP11, RAE1, SPRYD3 and KCTD6 (XREF_FIG)."

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."
ILF3 affects USP11
2 | 2 1
2 | 2 1

reach
"Collectively, the present findings indicated that USP11 binded to and deubiquitinated NF90, thereby stabilizing the protein expression level and promoting HCC cell proliferation and metastasis."

reach
"Our previous research has demonstrated that the deubiquitinase USP11 binds to NF90, resulting in its deubiquitination and stabilization."

sparser
"Our previous research has demonstrated that the deubiquitinase USP11 binds to NF90, resulting in its deubiquitination and stabilization."
IGF2BP3 affects USP11
2 | 1 2
2 | 1 2

reach
"In colon cancer, USP11 could bind IGF2BP3 and block its ubiquitination degradation, which then promotes tumor proliferation and metastasis [39]."

sparser
"In colon cancer, USP11 could bind IGF2BP3 and block its ubiquitination degradation, which then promotes tumor proliferation and metastasis [ xref ]."

sparser
"Co-immunoprecipitation assays, Western blotting, ubiquitination assays, and rescue experiments were performed to elucidate the interaction between USP11 and insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3)."
E7 affects USP11
2 | 2 1
2 | 2 1

sparser
"Indeed E7 binds to USP11 and reduces the ubiquitination and therefore increases the stability of E7 ( Lin et al., 2008 )."

reach
"Both in vitro and in vivo, USP11 binds E7 and reduces the extent of poly-ubiquitination."

reach
"Lastly, in what is perhaps an attempt to counter the host 's efforts to destroy it, E7 also interacts with the cellular DUB USP11, which leads to the stabilization of E7."
BMI1 affects USP11
3 | 2
3 | 2

reach
"Although the co-precipitation data implied that both USP7 and USP11 can interact with MEL18 and BMI1, they did not address whether this occurred within the context of a canonical PRC1 complex."

reach
"In view of the co-precipitation and size fractionation data, it was of interest to know whether USP7 and USP11 interact directly with MEL18 and BMI1 or other PRC1 components."
| 5
5-formyluracil inhibits USP11.
| 3

reach
"The results showed that overexpression of VCP inhibited reduced cell viability caused by USP11 knockdown when treated with 5-Fu."

reach
"In this study, we found that the autophagy of colorectal cancer cells with overexpression of USP11 was significantly enhanced after treated with 5-Fu, while the autophagy of colorectal cancer cells with knockdown of USP11 was significantly weakened after treated with 5-Fu."

reach
"To investigate whether USP11 is related to autophagy, rapamycin and 5-Fu were used to stimulate USP11 knockdown and overexpressing cells."
5-formyluracil increases the amount of USP11.
| 2
5-formyluracil increases the amount of USP11. 2 / 2
| 2

reach
"What 's more, 5-Fu treatment could increase the expression level of USP11 but had no effect on VCP."

reach
"After 48 hours of treatment with different concentrations of 5-Fu, we found that 5-Fu dramatically upregulated USP11 expression in a dose dependent manner in HCT8 cells."
Estrogen affects USP11
| 2 2
| 2 2

reach
"A recent study showed that estrogen increases USP11 at the protein level (Dwane et al., 2020), which may also contribute to increased USP11 protein in females."

eidos
"Notably , estrogen elevates USP11 , and USP11 in turn regulates aspects of female-biased biology , such as estrogen-induced estrogen receptor activity ( Dwane et al ., 2020 ) and BRCA1 / 2-mediated DNA damage response ( Orthwein et al ., 2015 ; Schoenfeld et al ., 2004 ) ."

eidos
"A recent study showed that estrogen increases USP11 at the protein level ( Dwane et al ., 2020 ) , which may also contribute to increased USP11 protein in females ."

reach
"Notably, estrogen elevates USP11, and USP11 in turn regulates aspects of female-biased biology, such as estrogen-induced estrogen receptor activity (Dwane et al., 2020) and BRCA1/2-mediated DNA damage response (Orthwein et al., 2015; Schoenfeld et al., 2004)."
USP11 affects proteolysis
| 4
| 4

reach
"These results indicate that USP11 may prevent Mgl-1 protein degradation from the 26S proteasome."

reach
"RanBPM protein degradation was prevented by USP11 resulting in the protein stabilization [16] ."

reach
"The deubiquitinating activity of USP11 prevents SFTPC protein degradation."

reach
"This provides us a new perspective for future studies.In conclusion, in our present study, we found that IsoLiPro can lower USP11 protein levels both in vivo and in vitro, mainly through modulating protein degradation without impacting directly the USP11 enzyme activity, and consequently ameliorate AD pathologies in transgenic AD animal model."

reach
"Additionally, USP11 knockdown reduced glycolysis in BLCA cells, which was reversed by the addition of lactate and pyruvate (Figure S13A-J)."

reach
"USP11 promotes glycolysis by regulating HIF-1alpha stability in hepatocellular carcinoma."

reach
"We also demonstrated that USP11 could enhance glycolysis through PDK1 and LDHA‐related mechanisms."

reach
"Moreover, USP11/HIF-1alpha could promote glycolysis through the PDK1 and LDHA pathways."
USP11 affects cell death
| 4
USP11 inhibits cell death.
| 2
| 2

reach
"USP11 silencing also led to increased Bcl-2-like protein 11 [Bcl-2 Interacting Mediator of cell death (BIM)] levels in the presence of GCs (Fig. 6F)."

reach
"Interestingly, our results verified that USP11 silencing repressed the pyroptotic cell death by inhibiting the activation of IL-18, caspase-1, NLRP3, IL-1β, and GSDND-N in in vivo and in vitro models, indicative of an anti-pyroptosis effect of USP11 knockdown."
USP11 activates cell death.
| 2
| 2

reach
"Therefore, USP11 overexpression significantly ameliorates oxidative stress-induced iron-dependent cell death and alleviates IVDD through SIRT3 upregulation (Zhu et al. 2023)."

reach
"Subsequently, they demonstrated that the USP11 expression inhibition in cell lines was related to reduction of cell proliferation, migration, invasion and lead to an increasing cell death."
USP11 affects TRIP12
| 4
| 2

sparser
"To determine which binding pocket was used to mediate the interactions with USP11, PPM1G, DHX40, DDX24 and TRIP12, we repeated the myc-USP7 co-IP experiments in CNE2Z cells, using USP7 mutants with D164A,W165A mutations to disrupt the TRAF binding pocket (referred to as DW) or D762R,D764R mutations to disrupt the Ubl2 pocket (referred to as Ubl2)."

sparser
"Comparison of protein recoveries with individual DW and Ubl2 USP7 mutants showed that interactions with PPM1G, USP11, DDX24 and TRIP12 were greatly affected by the DW mutation and much less affected by the Ubl2 mutation, indicating that these proteins all interact predominantly bind USP7 through the TRAF binding pocket."
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
USP11 affects PRMT1
| 4
USP11 deubiquitinates PRMT1. 4 / 4
| 4

reach
"We also find that USP11 deubiquitylates PRMT1 and that this correlates with an increase in the methylation of the PRMT1 substrate MRE11."

reach
"USP11 deubiquitylation of PRMT1 regulates methyltransferase activity."

reach
"More interestingly, we did indeed identify USP11 as a PRMT1 DUB because knockdown of USP11 increased PRMT1 ubiquitylation, whilst ectopic overexpression suppressed ubiquitylation in a USP11 catalytic-dependent manner (Fig. 7b and Supplementary Fig. 5b)."

reach
"Additionally, USP11 deubiquitylates PRMT1 to regulate its interaction with the DNA repair protein MRE11, thereby controlling DNA damage repair 90."
USP11 affects PRDX2
2 | 1 1
2 | 1 1

reach
"Mechanistically, USP11 binds to PRDX2, facilitating the removal of its K63-linked polyubiquitination, which promotes its translocation into the nucleus."

sparser
"Mechanistically, USP11 binds to PRDX2, facilitating the removal of its K63-linked polyubiquitination, which promotes its translocation into the nucleus."
USP11 affects MYCN
2 | 2
2 | 2

sparser
"Binding of USP11 to MYCN was enhanced by a Thr58/Ser62 double alanine substitution ( xref ) and by individual substitutions of Ser62 and Thr58 ( xref )."

sparser
"This mechanism requires the binding of MYCN to the deubiquitylating enzyme USP11."
USP11 affects DDX24
| 4
| 2

sparser
"To determine which binding pocket was used to mediate the interactions with USP11, PPM1G, DHX40, DDX24 and TRIP12, we repeated the myc-USP7 co-IP experiments in CNE2Z cells, using USP7 mutants with D164A,W165A mutations to disrupt the TRAF binding pocket (referred to as DW) or D762R,D764R mutations to disrupt the Ubl2 pocket (referred to as Ubl2)."

sparser
"Comparison of protein recoveries with individual DW and Ubl2 USP7 mutants showed that interactions with PPM1G, USP11, DDX24 and TRIP12 were greatly affected by the DW mutation and much less affected by the Ubl2 mutation, indicating that these proteins all interact predominantly bind USP7 through the TRAF binding pocket."
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
TBX19 affects USP11
| 1 3
| 1 3

sparser
"USP11 directly interacts with the transcription factor TPIT."

sparser
"The interaction between USP11 and TPIT was further validated by Co-IP in HEK-293T cells, where USP11 was shown to interact with TPIT."

sparser
"Thus, these results suggest that USP11 interacts directly with the transcription factor TPIT."

reach
"The interaction between USP11 and TPIT was further validated by Co-IP in HEK-293T cells, where USP11 was shown to interact with TPIT."
SLC11A1 affects USP11
| 4
| 4

reach
"These results suggest that erastin disrupts the interaction between LSH and USP11, leading to increased ubiquitination and subsequent degradation of LSH."

reach
"Mechanistically, LSH interacts with and is stabilized by ubiquitin-specific protease 11 (USP11) via deubiquitination; this interaction was disrupted by erastin treatment, resulting in increased ubiquitination and LSH degradation."

reach
"Moreover, Co-IP experiments confirmed an obvious interaction between LSH and USP11, primarily within the nuclei of HCT116 cells (Fig. 2E, F)."

reach
"The interaction between USP11 and LSH decreased with the duration of erastin treatment, and the reduction in interaction was significant at 8 hours when the level of LSH was not significantly affected (Fig. 4E)."
PRDX2 affects USP11
2 | 1 1
2 | 1 1

reach
"Mechanistically, USP11 binds to PRDX2, facilitating the removal of its K63-linked polyubiquitination, which promotes its translocation into the nucleus."

sparser
"Mechanistically, USP11 binds to PRDX2, facilitating the removal of its K63-linked polyubiquitination, which promotes its translocation into the nucleus."
PPM1G affects TRIP12
| 4
| 2

sparser
"To determine which binding pocket was used to mediate the interactions with USP11, PPM1G, DHX40, DDX24 and TRIP12, we repeated the myc-USP7 co-IP experiments in CNE2Z cells, using USP7 mutants with D164A,W165A mutations to disrupt the TRAF binding pocket (referred to as DW) or D762R,D764R mutations to disrupt the Ubl2 pocket (referred to as Ubl2)."

sparser
"Comparison of protein recoveries with individual DW and Ubl2 USP7 mutants showed that interactions with PPM1G, USP11, DDX24 and TRIP12 were greatly affected by the DW mutation and much less affected by the Ubl2 mutation, indicating that these proteins all interact predominantly bind USP7 through the TRAF binding pocket."
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
PARP1 affects USP11
2 | 1 1
2 | 1 1

reach
"The synthetic lethal interaction between USP11 and PARP uncovered by this work illustrates the potential of proteases as critical players in maintaining cancer cell viability and highlights the special relevance of the ubiquitin-proteasome system in this regard."

sparser
"The synthetic lethal interaction between USP11 and PARP uncovered by this work illustrates the potential of proteases as critical players in maintaining cancer cell viability and highlights the special relevance of the ubiquitin–proteasome system in this regard."
PALB2 affects USP11
2 | 1 1
2 | 1 1

reach
"Conversely, PALB2 also associates with the Deubiquitinase (DUB) USP11 which can antagonize RNF168 ubiquitylation at chromatin and promote PALB2 interaction with BRCA1, which is essential for proper HR to occur at DNA damage sites ."

sparser
"Conversely, PALB2 also associates with the Deubiquitinase (DUB) USP11 which can antagonize RNF168 ubiquitylation at chromatin and promote PALB2 interaction with BRCA1, which is essential for proper HR to occur at DNA damage sites xref ."
MYCN affects USP11
2 | 2
2 | 2

sparser
"Binding of USP11 to MYCN was enhanced by a Thr58/Ser62 double alanine substitution ( xref ) and by individual substitutions of Ser62 and Thr58 ( xref )."

sparser
"This mechanism requires the binding of MYCN to the deubiquitylating enzyme USP11."
MAPT affects USP11
| 3 1
| 3 1

reach
"As shown in Fig. 1A,B, the levels of both USP11 and total tau proteins were significantly downregulated after IsoLiPro treatment in HEK293-hTau cells overexpressing tau441.To further confirm the interactions between USP11 and tau and the involvement of USP11 in IsoLiPro-induced tau reduction, HEK293-hTau cells overexpressing USP11 (HEK293-hTau/USP11) was conducted."

reach
"As expected, significantly reduced interactions between cellular tau and USP11 can be observed after IsoLiPro treatment (Fig. 1E)."

reach
"In addition, the impaired interaction between USP11 and tau was further confirmed in vitro by IF staining, as evidenced by the weakened co-localizations of these two proteins (Fig. EV2A)."

sparser
"We also detected native USP11-tau complexes by proximity ligation assay (PLA) in Hela-V5-tau cells ( xref ; xref , negative controls)."
EGFR affects USP11
2 | 1 1
2 | 1 1

reach
"USP11 binds to the epidermal growth factor receptor (EGFR) and deubiquitinates and protects the EGFR from proteasome-dependent degradation, enhancing the transduction of the downstream signaling pathway of TGF-β 67.The ubiquitin system can modulate key molecules of the MAPK signaling pathway and thereby regulate the fibrosis process."

sparser
"USP11 binds to the epidermal growth factor receptor (EGFR) and deubiquitinates and protects the EGFR from proteasome-dependent degradation, enhancing the transduction of the downstream signaling pathway of TGF-β xref ."
DDX24 affects USP11
| 4
| 2

sparser
"To determine which binding pocket was used to mediate the interactions with USP11, PPM1G, DHX40, DDX24 and TRIP12, we repeated the myc-USP7 co-IP experiments in CNE2Z cells, using USP7 mutants with D164A,W165A mutations to disrupt the TRAF binding pocket (referred to as DW) or D762R,D764R mutations to disrupt the Ubl2 pocket (referred to as Ubl2)."

sparser
"Comparison of protein recoveries with individual DW and Ubl2 USP7 mutants showed that interactions with PPM1G, USP11, DDX24 and TRIP12 were greatly affected by the DW mutation and much less affected by the Ubl2 mutation, indicating that these proteins all interact predominantly bind USP7 through the TRAF binding pocket."
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
AR affects USP11
| 2 2
| 2 2

reach
"~49% (6,164 of 12,496) of AR peaks overlapped with HA-USP11-WT peaks (Fig. 5I), suggesting the interaction between USP11 and AR on select AR target genes."

sparser
"These analyses indicate that the AR LBD interacts with the USP11 N terminus ()."

sparser
"We also observed HA-USP11-WT peaks at AR or c-Myc gene promoter regions where we had detected no HA-USP11-CS peaks ( xref ), consistent with our ChIP-PCR data showing that USP11 binds to AR and c-Myc promoters to induce H2A deubiquitination ( xref and)."

reach
"We also observed HA-USP11-WT peaks at AR or c-Myc gene promoter regions where we had detected no HA-USP11-CS peaks (Fig. 5 C and D), consistent with our ChIP-PCR data showing that USP11 binds to AR and c-Myc promoters to induce H2A deubiquitination (Fig. 4 A and B and SI Appendix, Fig. S5 L and M)."
Lithium(1+) affects USP11
| 3
Lithium(1+) decreases the amount of USP11. 3 / 3
| 3

reach
"Our research introduces IsoLiPro, a unique lithium isobutyrate-L-proline coordination compound, effectively lowers USP11 protein level and enhances tau ubiquitination in vitro."

reach
"Our research introduces IsoLiPro, a novel lithium isobutyrate-l-proline coordination compound, which effectively reduces USP11 protein levels and enhances tau ubiquitination in vitro."

reach
"In our present study, while IsoLiPro inhibits USP11, it has little effect on USP25 protein levels, suggesting a specific inhibition of IsoLiPro on USP11.In our present study, IsoLiPro but not lithium decreases the USP11 protein level, indicating the whole molecule IsoLiPro might be responsible for its impacts on USP11."
USP9X affects CYLD
| 3
CYLD binds USP9X and USP11. 3 / 3
| 3

sparser
"Gene–gene interaction using MDR We used MDR analysis to explore the gene–gene interactions between CYLD, USP9X, and USP11 on the risk of CRC."

sparser
"There were significant associations between the CNVs of CYLD, USP9X, and USP11 and increased CRC risk, significant gene–environment interactions on the risk of CRC: CNVs of USP9X interact with fish consumption and USP11 CNVs interact with leftover consumption."

sparser
"Interactions between CNVs of CYLD, USP9X, USP11 genes and environmental factors on the risk of CRC In the del v."
USP4 affects USP15
| 3
USP4 binds USP11 and USP15. 3 / 3
| 3

sparser
"USP15 forms a subfamily with USP4 and USP11 related through a shared presence of N-terminal &quot;domain present in ubiquitin specific proteases&quot; (DUSP) and &quot;ubiquitin-like&quot; (UBL) domains (DU subfamily)."

sparser
"Human deubiquitinase Usp15 forms a small subfamily with its close relatives Usp11 and Usp4, which all share a common domain architecture."

sparser
"USP4 can form stable homodimers and can also interact with USP11 and USP15 ( Fig. 4 )."
USP11 affects melanoma cells
| 3
USP11 activates melanoma cells. 3 / 3
| 3

eidos
"Furthermore , we demonstrate that USP11 mediates the proliferation of melanoma cells via NONO because the effect of USP11 knockdown on melanoma cells could be rescued by introducing NONO ."

eidos
"We also demonstrated that USP11 promoted the melanoma cells proliferation and tumorigenesis via NONO ."

eidos
"Similar results were yielded from a CCK-8 assay ( Figure 5B ) , indicating that USP11 mediated the proliferation of melanoma cells through NONO ."

reach
"3.6 USP11 Modulates the LPS Pathway by Increasing LPA1-CD14 Complex Levels."

reach
"This suggests that USP11 may modulate the LPS pathway through regulating LPA1 stability and levels of LPA1 and CD14 complex."

reach
"To investigate whether USP11 modulates LPS induced signaling, USP11 expression was down-regulated by usp11 shRNA transfection."
USP11 affects influenza A virus RNA replication
| 3
USP11 inhibits influenza A virus RNA replication. 3 / 3
| 3

eidos
"Taken together , the result indicated that USP11 primarily inhibits influenza A virus RNA replication through its deubiquitinating enzyme activity ."

eidos
"We further dissected the mechanism of inhibition of influenza A virus RNA replication by USP11 ."

eidos
"Our results have shown that USP11 inhibited influenza A virus RNA replication and that NP is a monoubiquitinated protein that can be deubiquitinated by USP11 specifically ."

reach
"USP11 exacerbates radiation induced pneumonitis by activating endothelial cell inflammatory response via OTUD5-STING signaling."

reach
"The data provided evidence that USP11 positively regulated p53 expression to aggravate the ICH-induced neurological impairment and inflammation."

reach
"Taken together, it could be concluded that USP11 knockdown blocked microglial cell activation and inhibited the production of inflammation mediators in rats with ICH."

reach
"Importantly, we evaluated the effect of USP11 on ACTH secretion using enzyme-linked immunosorbent assay (ELISA), which demonstrated that overexpression of USP11 increased ACTH secretion, whereas knockdown reduced ACTH secretion in AtT-20 cells (Fig. 2D-E)."

reach
"Notably, USP11 knockdown significantly inhibited ACTH secretion in vivo (Fig. 2G)."

reach
"These findings collectively indicate that USP11 enhances the transcription of POMC and promotes ACTH secretion."
| 3

reach
"These findings confirmed that USP11 can modulate HIF‐1α activity.In previous work, we reported that USP11 might increase both HCC cell migration and proliferation, 16 and HIF‐1α has been shown to trigger the transcription of genes involved in HCC proliferation, angiogenesis, metastasis and invasion."

reach
"Besides, USP11 knockdown could reduce the cell migration ability, and HIF‐1α overexpression rescued the cell migration ability to a certain extent (Figure 3F)."

reach
"The combination of USP11 overexpression and BLM treatment produced increased cell migration and invasion, compared with cells treated with BLM alone (Figure 5G and 5H)."
USP11 affects cell cycle
| 3
| 3

reach
"Our data indicated that the Usp11 deficiency increased cell cycle length of NPCs at E12.5 (XREF_FIG)."

reach
"The highest affinity USP11 peptide binder fused to a cellular delivery sequence induced significant nuclear localization and cell cycle arrest in S phase, affecting the viability of different mammalian cell lines."

reach
"In this study, we observed that depleting USP11 inhibits cell proliferation and delays cell cycle progression."
USP11 affects VGLL4
1 | 2
USP11 deubiquitinates VGLL4.
1 | 1
USP11 deubiquitinates VGLL4. 1 / 2
1 | 1

reach
"Furthermore, ubiquitin-specific peptidase 11 (USP11) deubiquitinates and upregulates vestigial like family member 4 (VGLL4), a transcriptional repressor that interacts with transcription factors TEADs."
USP11 activates VGLL4.
| 1
USP11 activates VGLL4. 1 / 1
| 1

reach
"Studying the regulation of tumor suppressor Hippo cascade, Zhang et al. reported that USP11 stabilizes VGLL4 and may modulate VGLL4 and YAP-TEADs regulatory loop 59."
USP11 affects USP15, and USP4
| 3
USP4 binds USP11 and USP15. 3 / 3
| 3

sparser
"USP15 forms a subfamily with USP4 and USP11 related through a shared presence of N-terminal &quot;domain present in ubiquitin specific proteases&quot; (DUSP) and &quot;ubiquitin-like&quot; (UBL) domains (DU subfamily)."

sparser
"Human deubiquitinase Usp15 forms a small subfamily with its close relatives Usp11 and Usp4, which all share a common domain architecture."

sparser
"USP4 can form stable homodimers and can also interact with USP11 and USP15 ( Fig. 4 )."
USP11 affects SUMO-ubiquitin chains
| 3
USP11 deubiquitinates SUMO-ubiquitin chains. 3 / 3
| 3

reach
"USP11 can deubiquitinate hybrid SUMO-ubiquitin chains to counteract RNF4."

reach
"USP11 also deubiquitinates SUMO-ubiquitin chains from PML, while the sumolytion of LPA1 has not been discovered."

reach
"Additionally, the research reported that USP11 can deubiquitinate hybrid SUMO-ubiquitin chains to counteract RNF4 [43]."
USP11 affects SPRTN auto-proteolysis
| 3
USP11 inhibits SPRTN auto-proteolysis. 3 / 3
| 3

eidos
"Depletion of USP11 leads to increased SPRTN auto-proteolysis , an accumulation of unrepaired DPCs , and sensitizes cells to DPC-inducing agents ."

eidos
"Depletion of USP11 increased SPRTN auto-proteolysis and sensitized cells to DPC-inducing agents leading to increased accumulation of DPCs ."

eidos
"USP11 depletion impairs SPRTN deubiquitination and promotes SPRTN auto-proteolysis in response to formaldehyde-induced DPCs ."

reach
"Altogether, these data indicated that USP11 silencing could relieve I/R-induced myocardial pyroptosis."

reach
"These data indicate that USP11 silencing could inhibit I/R-induced myocardial inflammation."

reach
"USP11 Silencing Suppressed the Pyroptosis of Myocardial Cells During Alleviated I/R Damage."
USP11 affects PI3K
| 3
USP11 inhibits PI3K. 3 / 3
| 3

reach
"Background: Ubiquitin-specific protease 11 (USP11), one of the principal phosphatase and tensin homolog (PTEN) deubiquitinases, can reserve PTEN polyubiquitination to maintain PTEN protein integrity and inhibit PI3K/AKT pathway activation."

reach
"Conversely in a total brain injury in-vivo model, Fang et al. demonstrated that USP11 negatively regulates the PI3K/AKT pathway by elevating Pyruvate Kinase M2 (PKM2) levels, causing neurological impairment and neuronal apoptosis [46]."

reach
"USP11 is an antagonist of PI3K due to its ability to amplify PTEN expression [5,6,7,17,21,22]."
USP11 affects PEG10
| 3
USP11 increases the amount of PEG10. 3 / 3
| 3

reach
"A study suggests that phosphorylated E2F1 is stabilized by nuclear USP11 to drive Peg10 gene expression and activate proliferation of lung epithelial cells [54]."

reach
"The data suggest that GSK3beta and USP11 act in concert to modulate E2F1 abundance and PEG10 expression in lung epithelial cells to affect cell wound healing."

reach
"Phosphorylated E2F1 is stabilized by nuclear USP11 to drive Peg10 gene expression and activate lung epithelial cells."
USP11 affects MYCBP2
1 | 2
1 | 2

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."
USP11 affects MAPK
| 3
USP11 activates MAPK. 3 / 3
| 3

reach
"Interestingly, only the ERK/MAPK pathway was activated by high USP11 expression in the present study."

reach
"USP11 promotes colorectal cancer growth and metastasis by stabilizing PPP1CA, activating the ERK/MAPK pathway, and insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3) signaling (151), and interacting with nuclear factor 90 (NF90) to promote HCC proliferation and metastasis (152)."

reach
"Another study has the same point, namely, that the overexpression of USP11 promotes metastasis of CRC cells both in vitro and in vivo by activating the ERK/MAPK pathway and stabilizing PPP1CA."
USP11 affects IsoLiPro
| 3
IsoLiPro binds USP11. 3 / 3
| 3

reach
"Our data revealed that IsoLiPro can strongly bind to USP11 with a dissociation constant (Kd) of 4.3394E-05 M (Fig. EV4D)."

reach
"This low Kd value signifies a strong affinity between IsoLiPro and USP11, underscoring its potential in therapeutic applications.The differences in binding to USP11 among these molecules were further elucidated through analysis of MD parameters, including RMSD, RMSF, Rg, and SASA."

reach
"Fortunately, docking assays further revealed direct binding of IsoLiPro with USP11, and cell-based experiments indicated that IsoLiPro decreases USP11 protein level and enhances tau ubiquitination level, which might contribute to the downregulated total tau."
USP11 affects IKK_complex
| 3
| 3

reach
"USP11 upregulates IkappaB kinase alpha in a ubiquitin independent manner XREF_BIBR, while USP18 has been shown to negatively regulate interferon signalling through protein interactions that are independent of its isopeptidase activity XREF_BIBR."

reach
"Moreover, USP11 knockdown resulted in the reduced production of pro-inflammatory factors and decreased activity of the IKKβ/NF-κB pathway."

reach
"USP11 positively regulates IkappaB kinase alpha (IKKalpha)."
USP11 affects GST
| 3
| 3

sparser
"Purified GST-p21, but not the GST control, was able to bind to GST-USP11 under cell-free conditions ( xref ), demonstrating a direct interaction between USP11 and p21."

sparser
"To analyse whether USP11 and NONO interacts with each other directly, purified recombinant USP11 protein was generated and GST‐pulldown assays results showed that recombinant GSTUSP11, but not the GST control, could bind to Myc‐NONO protein expressed in HEK293 cells (Figure  xref )."

sparser
"Similar results were obtained by incubating purified GST-USP11 with extracts from A549 cells ()."
USP11 affects Fibrosis
| 3
| 3

reach
"USP11 promotes renal tubular cell pyroptosis and fibrosis in UUO mice via inhibiting KLF4 ubiquitin degradation."

reach
"Finally, inhibition of USP11 using MTX in mice significantly reduced fibrosis in their lung tissues."

reach
"Deubiquitinating enzyme USP11 promotes renal tubular cell senescence and fibrosis via inhibiting the ubiquitin degradation of TGF-β receptor II."
USP11 affects DNA repair
| 3
| 3

reach
"In line with the finding that the deficiency of Usp11 induces defects in DNA repair (27, 28, 34, 35), these results indicate that Usp11 knockout induces DNA damage in mouse MECs."

reach
"Additionally, USP11 depletion led to increased sensitivity to micrococcal nuclease following IR when compared to controls, and therefore may be able to modulate DNA repair factor access to chromatin as well [137]."

reach
"More interestingly, whilst expression of USP11 rescued the defect in DNA repair induced by USP11 depletion, confirming the specificity of our siRNA sequences, expression of USP11-R433K could not, implying that methylation is required for USP11 to effectively function in the repair of olaparib-induced lesions (Fig. 4a, b)."
USP11 affects Collagen
| 3
| 3

reach
"USP11 elevates the ability of proliferation, collagen deposition, invasion and migration of keloid-derived fibroblasts by deubiquitinating TβRII."

reach
"The authors postulated that USP11 up-regulates and augments the ability of proliferation, invasion, migration and collagen deposition of keloid-derived fibroblasts (KFBs) through deubiquitinating TGF-β receptor II (TβRII)."

reach
"Notably, USP11 depletion produced a marked reduction in Sirius red intensity in the hiPSCs-SFTPC -AOs (Figure 6G; middle panel), suggesting that the knockdown of USP11 decreases collagen deposition."
| 3
| 3

reach
"The results showed that overexpression of VCP inhibited reduced cell viability caused by USP11 knockdown when treated with 5-Fu."

reach
"Cell Counting Kit 8 (CCK8) assay showed that USP11 knockdown significantly inhibited cell viability and proliferation in HCT116 cells compared with the control group, whereas the opposite effect was observed in USP11-overexpressing HCT8 cells (P "

reach
"USP11 promotes HCC cell survival, invasion, and metastatic potency in vitro and in vivo."
USP11 affects CYLD
| 3
CYLD binds USP9X and USP11. 3 / 3
| 3

sparser
"Gene–gene interaction using MDR We used MDR analysis to explore the gene–gene interactions between CYLD, USP9X, and USP11 on the risk of CRC."

sparser
"There were significant associations between the CNVs of CYLD, USP9X, and USP11 and increased CRC risk, significant gene–environment interactions on the risk of CRC: CNVs of USP9X interact with fish consumption and USP11 CNVs interact with leftover consumption."

sparser
"Interactions between CNVs of CYLD, USP9X, USP11 genes and environmental factors on the risk of CRC In the del v."
USP11 CS affects USP11
| 3
USP11 CS activates USP11. 3 / 3
| 3

reach
"Reciprocally, upon overexpression of USP11, but not USP11 CS, we demonstrated an overall decrease in protein levels of eIF4B dependent tumor suppressor genes."

reach
"Examining protein turnover using classical cyclohexamide treatment, we noted that overexpression of USP11 (wt) but not USP11 CS or GFP expression vector (Figs."

reach
"Reciprocally, upon overexpression of USP11, but not USP11 CS, we demonstrated an overall increase in protein levels of eIF4B dependent genes."
TGFB affects USP11
| 1
TGFB activates USP11. 1 / 3
| 1

reach
"Thus, our results demonstrate that MTX treatment reduces the fibrosis caused by TGF-β in hiPSCs-SFTPC -AOs by targeting USP11."
PB2 affects Nucleoproteins
| 3
| 3

sparser
"The co-immunoprecipitation results showed that USP11 interacts with PB2, PA and NP, respectively."

sparser
"USP11 specifically interacts with PB2, PA and NP. (A) The interaction of USP11 with singly expressed viral proteins."

sparser
"Conversely, cellular deubiquitinase USP11 can interact with PB2, PA and NP, and thereby affect the function of RNP complex during RNA replication."
MYCBP2 affects USP11
1 | 2
1 | 2

reach
"We show here that USP11 also binds, directly or indirectly, to SPRYD3, RAE1, PAM and KCTD6."

reach
"USP11 interacts with RAE1, SPRYD3, KCTD6 and PAM."
MTOR affects USP11
2 | 1
2 | 1

reach
"In addition, USP11 interacts with and stabilizes the serine/threonine kinase mTOR, thereby further contributing to the regulation of autophagy induction."
HIF affects USP11
| 3
| 3

reach
"These results demonstrated that USP11 affects the stability of the HIF‐1α protein.To further reveal the potential interaction between USP11 and HIF‐1α, a Co‐IP assay was performed."

reach
"7 , 16 We examined the relationship between USP11 and HIF‐1α using the GEPIA (TCGA) database and found a positive association between USP11 and HIF‐1α in HCC (p < 0.05) (Figure 5B)."

reach
"A strong positive association between HIF‐1α and USP11 was found, as illustrated in Figure 5A."
GST affects USP11
| 3
| 3

sparser
"Purified GST-p21, but not the GST control, was able to bind to GST-USP11 under cell-free conditions ( xref ), demonstrating a direct interaction between USP11 and p21."

sparser
"To analyse whether USP11 and NONO interacts with each other directly, purified recombinant USP11 protein was generated and GST‐pulldown assays results showed that recombinant GSTUSP11, but not the GST control, could bind to Myc‐NONO protein expressed in HEK293 cells (Figure  xref )."

sparser
"Similar results were obtained by incubating purified GST-USP11 with extracts from A549 cells ()."
FK228 affects USP11
| 3
FK228 increases the amount of USP11. 3 / 3
| 3

reach
"FK228 could enhance anti-tumour activity by upregulating expression of the tumour suppressor USP11 in GBM cells."

reach
"Furthermore, FK228 treatment upregulated H2AZK4/7AC and H3K27AC expression and enhanced USP11 expression."

reach
"FK228 could enhance anti-tumour activity against GBM by upregulating the expression of the tumour suppressor USP11."
CYLD affects USP9X
| 3
CYLD binds USP9X and USP11. 3 / 3
| 3

sparser
"Gene–gene interaction using MDR We used MDR analysis to explore the gene–gene interactions between CYLD, USP9X, and USP11 on the risk of CRC."

sparser
"There were significant associations between the CNVs of CYLD, USP9X, and USP11 and increased CRC risk, significant gene–environment interactions on the risk of CRC: CNVs of USP9X interact with fish consumption and USP11 CNVs interact with leftover consumption."

sparser
"Interactions between CNVs of CYLD, USP9X, USP11 genes and environmental factors on the risk of CRC In the del v."

reach
"A clinical trial in relapsed T-ALL showed that mitoxantrone, a type II topoisomerase inhibitor that also inhibits USP11, increased progression-free and overall survival compared with idarubicin (71, 72)."

reach
"Additionally, the type II topoisomerase inhibitor mitoxantrone inhibits USP11 and demonstrates increased progression-free and overall survival in a relapsed T-ALL clinical trial, suggesting that USP11 inhibition can be exploited therapeutically [14, 15]."
1 | 1
Progesterone increases the amount of USP11. 1 / 2
1 | 1

reach
"Estradiol is known to stimulate USP11 expression in breast cancer [15], but Estradiol and progesterone failed to upregulate USP11 levels in AtT20 and pituitary primary cells (Supplementary Fig. 3B-C)."
Knockout HDAC1 HDAC2 affects USP11
| 2
Knockout HDAC1 HDAC2 activates USP11. 2 / 2
| 2

eidos
"f , i The knockout of both HDAC1 and HDAC2 upregulated USP11 at the mRNA and protein levels in U87-vIII , U251-vIII and N9-vIII cells Fig. 6 : EGFR-vIII enhanced USP11 promoter silencing through downregulating H3K27AC and H2AZK4 / 7AC in the USP11 promoter area ."

eidos
"The knockout of both HDAC1 and HDAC2 upregulated USP11 at the mRNA and protein levels in U87-vIII , U251-vIII and N9-vIII cells ( Fig. 5f , i ) ."
Doxycycline affects USP11
| 2
| 2

reach
"Supporting this, the addition of MG132 only marginally increased PRMT1 ubiquitylation (Supplementary Fig. 5a), whilst protein levels of PRMT1 in two different breast cancer cell lines were unchanged after doxycycline-induced depletion or overexpression of USP11 (Fig. 7e)."

reach
"Supporting this, doxycycline-inducible knockdown of USP11 and re-expression of methyl-deficient USP11 resulted in impaired clearance of 53BP1 foci in late S/G2 cells indicating persistent and unrepaired DSBs (Fig. 4c and Supplementary Fig. 2a)."
XPC affects USP11
1 | 1
1 | 1

sparser
"In addition, UV radiation induces USP11 translocation to chromatin and USP11-XPC interaction in the XPC ubiquitination dependent manner."
USP7 affects TRIP12
| 2
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
USP7 affects LCK
| 2
USP7 binds USP11 and LCK. 2 / 2
| 2

reach
"Thus, CUTLL1 cells were treated with DXM to evaluate the effect of GCs on the USP7/USP11-LCK complex."

reach
"We demonstrated that disruption of the USP7/USP11-LCK complex sensitizes T-ALL to GC treatment via NR3C1 up-regulation."
USP7 affects DDX24
| 2
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."

reach
"Additionally, USP11 has been shown to enhance the resistance of CRC cells to 5-fluorouracil treatment, suggesting that it may play a role in drug resistance in CRC."

reach
"Hongze Sun et al. [34] further found that USP11 induced drug resistance to 5-Fluorouracil in colorectal cancer through activating autophagy by stabilizing VCP."
USP11 affects resistance 5-Fu
| 2
USP11 activates resistance 5-Fu. 2 / 2
| 2

eidos
"USP11 promotes 5-Fu resistance through inducing autophagy dependent on VCP The above experimental results have confirmed that USP11 could not only mediate the resistance to 5-Fu , but also induce autophagy in colorectal cancer cells ."

eidos
"Taken together these data , we hypothesized that USP11 might mediate resistance to 5-Fu by inducing autophagy in colorectal cancer cells and verified the hypothesis in follow-up experiments ."
USP11 affects replication
| 1 1
USP11 inhibits replication. 2 / 2
| 1 1

sparser
"Furthermore, RNAi screening identified a host DUB USP11 that inhibits IAV RNA replication."

reach
"One recent study showed that the cellular DUB USP11 restricts influenza A virus replication XREF_BIBR."
USP11 affects pyroptosis
| 2
| 2

reach
"USP11 promotes renal tubular cell pyroptosis and fibrosis in UUO mice via inhibiting KLF4 ubiquitin degradation."

reach
"USP11 Silencing Suppressed the Pyroptosis of Myocardial Cells During Alleviated I/R Damage."

eidos
"100 A recent study indicated that USP7 stabilizes the Hippo pathway by deubiquitinating the transcriptional coactivator Yorkie , promoting HCC growth.101 Further , USP7 participates in lipogenesis-associated HCC progression by promoting stabilization and transcription of zinc-finger protein 638.102 USP11 is upregulated in HCC and is correlated with shorter survival in HCC patients.103 ,104 USP11 promotes HCC cell survival , invasion , and metastatic potency in vitro and in vivo.103 ,104 Mechanistically , USP11 interacts with nuclear factor 90 ( NF90 ) and promotes its deubiquitination , thereby stabilizing it in HCC cells.103 Consistent with this , USP11 expression positively correlates with NF90 expression in human HCC tissues.103 Similar to USP11 , elevated USP13 in HCC patients is associated with a poor prognosis ."

eidos
"Results form mass spectrometry , co-immunoprecipitation , and ubiquitination assays demonstrated that USP11 interacted with nuclear factor 90 ( NF90 ) and promoted its deubiquitination , thereby stabilizing it in HCC cells ."
USP11 affects migration
| 2
USP11 activates migration. 2 / 2
| 2

eidos
"In contrast , USP11 depletion significantly inhibited gastric cancer growth , migration and survival , and augmented chemotherapeutic drug 's efficacy ."

eidos
"Mechanism studies showed that USP11 depletion suppressed migration via RhoA-mediated pathway and inhibited growth and survival likely via Ras-mediated pathway ."
USP11 affects miR-132-3p
| 2
MiR-132-3p binds USP11. 2 / 2
| 2

reach
"We performed the bioinformatic analysis to predict the potential interaction between miR-132-3p and circ_DOCK1 or USP11."

reach
"A RIP kit (Geneseed, Guangzhou, China) was used to analyze the binding of miR-132-3p and USP11."
USP11 affects melanoma cell
| 2
USP11 activates melanoma cell. 2 / 2
| 2

eidos
"USP11 promotes melanoma cell proliferation via NONO ."

eidos
"Functionally , USP11 mediated melanoma cell proliferation via the regulation of NONO levels because ablation of USP11 inhibits the proliferation which could be rescued by ectopic expression of NONO protein ."
| 2
| 2

reach
"Furthermore, we revealed that ERK1/2 phosphorylated USP11 at the Ser905 site, which promoted the cytoplasmic localization of USP11."

reach
"The highest affinity USP11 peptide binder fused to a cellular delivery sequence induced significant nuclear localization and cell cycle arrest in S phase, affecting the viability of different mammalian cell lines."

reach
"Additionally, we observed that USP11 deficiency in knockdown HCC cells downregulates key lipid metabolism enzymes controlled by SREBF1."

reach
"Therefore, our investigation delves deeper into understanding how USP11 impacts HCC progression via its interaction with SREBF1.Our study reveals a novel pathway wherein USP11 promotes lipid metabolism in HCC cells."
USP11 affects influenza virus replication
| 2
USP11 inhibits influenza virus replication. 2 / 2
| 2

eidos
"Further , a USP14 inhibitor was found to inhibit the replication of Dengue viruses ( Nag and Finley , 2012 ) , whereas USP11 can interact with NP protein to inhibit influenza virus replication ( Liao et al ., 2010 ) ."

eidos
"We observed that downregulation of a cellular deubiquitinating enzyme USP11 resulted in enhanced virus production , suggesting that USP11 could inhibit influenza virus replication ."
USP11 affects influenza virus RNA replication
| 2
USP11 inhibits influenza virus RNA replication. 2 / 2
| 2

eidos
"USP11 inhibits influenza virus RNA replication ."

eidos
"Therefore , we concluded that the inhibition of influenza virus RNA replication by USP11 depended on its deubiquitinating enzyme activity ."
USP11 affects hemopoiesis
| 2
| 2

reach
"Targeting USP11 impedes T-ALL growth, sparing normal hematopoiesis and thymus development."

reach
"USP11 ablation inhibits leukemia progression in vivo, sparing normal hematopoiesis."
| 2
USP11 bound to TCEAL1 activates gene expression. 2 / 2
| 2

reach
"The USP11/TCEAL1 complex promotes transcription elongation to sustain oncogenic gene expression in neuroblastoma."

reach
"In neuroblastoma, USP11- and TCEAL1-dependent genes define a gene expression program that is characteristic for mesenchymal tumors, which are described as able to escape from many treatments, suggesting that the USP11/TCEAL1 complex promotes transcription elongation to support a critical oncogenic gene expression program."

reach
"These results suggest that CTRP9 attenuates lipid accumulation and enhances the expression of cholesterol efflux proteins in foam cells by USP11/CD36 axis."

reach
"CTRP9 attenuates lipid accumulation and enhances the expression of cholesterol efflux proteins in foam cells by USP11/CD36 axis."

reach
"Previously, we showed that USP11 knock-down in HDFs induces senescence [XREF_BIBR], here we report that USP11 ablation in U2OS cells results in multipolar spindle formation with an increased number of multinucleated cells."

reach
"USP11 modulates mitotic progression and senescence by regulating the p53-p21 axis through MDM2 deubiquitination."
USP11 affects TRIM24
| 2
| 2

sparser
"We confirmed the previously known interaction with the deubiquitinase USP11 and the E3 ubiquitin ligase TRIM24 ( xref ), as well as the E3 SUMO protein ligase PIAS1 ( xref )."

sparser
"We confirmed the previously known interaction with the de-ubiquitinase USP11 and the E3-ubiquitin ligase TRIM24 ( xref ), as well as the E3 SUMO-protein ligase PIAS1 ( xref )."
USP11 affects TNF
| 1
USP11 activates TNF. 1 / 2
| 1

reach
"In addition to those effects, USP11 knockdown also repressed neutrophil infiltration and the production of proinflammatory cytokines IL-1β and TNF-α, indicative of an anti-inflammatory potency of silencing USP11."
USP11 affects TGFbeta receptor
| 2
USP11 deubiquitinates TGFbeta receptor. 2 / 2
| 2

reach
"USP11 interacts with and deubiquitylates the type I TGFbeta receptor (ALK5), resulting in enhanced TGFbeta induced gene transcription."

reach
"For example, the closely related DUBs USP4, USP11 and USP15 have been reported to modulate TGFbeta signalling by deubiquitylating the type I TGFbeta receptor ALK5 [XREF_BIBR - XREF_BIBR]."
USP11 affects SPRTN deubiquitination
| 2
USP11 activates SPRTN deubiquitination. 2 / 2
| 2

eidos
"Similarly , USP11 depletion in HCT116 inhibited SFB-SPRTN deubiquitination ( Fig. 5B , lane 4 ) compared with negative control ( Fig. 5B , lane 2 ) upon formaldehyde treatment , suggesting that USP11 depletion inhibits SPRTN deubiquitination upon DPC induction ."

eidos
"USP11 depletion impairs SPRTN deubiquitination and promotes SPRTN auto-proteolysis in response to formaldehyde-induced DPCs ."
USP11 affects SOX4
1 | 1
1 | 1

sparser
"However, no interaction between Sox4 and Usp11 could be detected using E18.5 cortical lysates (fig."
USP11 affects SMAD4
| 2
USP11 deubiquitinates SMAD4. 2 / 2
| 2

reach
"Similarly, USP9x and USP11 interact and deubiquitinate Smad4 and ALK5, respectively, [29, 30] to regulate the transforming growth factor/BMP cell signaling pathways necessary for osteogenic differentiation and bone formation."

reach
"UCHL37, USP11, and USP15 de-ubiquitinate TbetaRI, XREF_BIBR, XREF_BIBR, XREF_BIBR while USP15, CYLD, and USP9X target SMAD4 or SMAD7."
USP11 affects SMAD2
| 2
USP11 phosphorylates SMAD2. 2 / 2
| 2

reach
"Consistent with this, we were able to show that the decrease in TGFbeta induced SMAD2 phosphorylation by USP11 depletion is abrogated by proteasomal inhibition (20 muM MG132, 3 h before TGFbeta stimulation)."

reach
"As expected, SMAD7 expression resulted in significant inhibition of TGFbeta induced phosphorylation of SMAD2, which was partially rescued by USP11 (XREF_FIG a)."
USP11 affects RSL3
| 2
RSL3 binds USP11. 2 / 2
| 2

reach
"This process occurs through the direct binding of RSL3 to USP11, resulting in its inactivation and subsequent induction of ubiquitination and degradation of NRF2 protein in these cells [122]."

reach
"Since USP11 is an enzyme having an active site with cysteine, we speculated that RSL3 might bind to USP11 to inhibit its activity in cells."

reach
"I RT-qPCR analysis of Usp11 and Notch1 in normal mouse thymocytes and spleen cells isolated from N1ΔE induced mouse T-ALL model (*P < 0.05, ****P < 0.00001)."

reach
"Furthermore, decreased NOTCH1 expression via application of shUSP11.2, which targets the UTR region of USP11, in T-ALL cells could be rescued by ectopic expression of USP11, suggesting that regulation of NOTCH1 expression is USP11 dependent (Fig. 2G, and Supplementary Fig. 1)."
USP11 affects PSD4
| 1 1
| 1 1

reach
"To test whether USP11 can directly interact with the TIC, we next performed cap pulldown assays using cap binding m 7 GTP immobilized beads."

sparser
"To test whether USP11 can directly interact with the TIC, we next performed cap pulldown assays using cap-binding m 7 GTP immobilized beads."
USP11 affects PF
| 2
USP11 activates PF. 2 / 2
| 2

reach
"As a functional consequence of the BLM-induced upregulation of Usp11 expression in lung tissue, we speculated that the pharmacological inhibition of Usp11 might block PF progression."

reach
"Finally, pharmacological inhibition of USP11 prevented PF caused by TGF-beta in hiPSCs-SFTPC I73T -AOs and BLM-induced mouse model, underscoring its therapeutic potential.Conclusions: Altogether, USP11 is a major protein stabilizer of SFTPC, and the clinical inhibition of USP11 during PF could be a novel therapeutic approach for ILD patients."
USP11 affects MRE11
| 2
USP11 methylates MRE11. 2 / 2
| 2

reach
"We found that depletion of USP11 significantly decreased MRE11 methylation (Fig. 6a and Supplementary Fig. 4c)."

reach
"We also show that PRMT1 is a ubiquitylated protein that it is targeted for deubiquitylation by USP11, which regulates the ability of PRMT1 to bind to and methylate MRE11."
USP11 affects MLF1
| 1 1
| 1 1

reach
"Since MLF1 is highly related to MLF2, we demonstrated that MLF1 also interacts with DCAF8 and USP11, suggesting that CRL4 DCAF8 and USP11 may also regulate the expression of MLF1."

sparser
"Additionally, we also determined the exact interaction between MLF1 and USP11 ( Fig. 4 C), which indicated that USP11 may play a role in stabilizing the protein level of MLF1."
| 2

reach
"USP11 stabilizes and enhances Eukayotic translation initiation factor 4B (eIF4B) activity and promotes oncogenic translation in diffuse large B cell lymphoma (DLBCL) (34)."

reach
"Bandish Kapadia et al. [37] found that phosphorylation of USP11 stabilizes and deubiquitinates transcription factor EIF4B and further promotes the progression and malignancy of diffuse large B-cell lymphoma, USP11 is phosphorylated by FASN-induced S6 kinase, which also suggests that the status of lymphoma is affected by altered lipid metabolism (Fig. 4)."
USP11 affects Leukemia
| 2
| 2

reach
"Leukemia progression is slowed down by USP11 ablation in vivo, but normal hematopoiesis is preserved."

reach
"USP11 ablation inhibits leukemia progression in vivo, sparing normal hematopoiesis."
USP11 affects KITLG
| 2
| 2

sparser
"Furthermore, mutational analysis demonstrates that distinct regions of SAP25 participate in its interaction with USP11, OGT/TETs, and SCF(FBXO3)."

sparser
"Finally, we use mutational analysis to demonstrate that distinct regions of SAP25 participate in its interaction with USP11, OGT/TETs, and SCF(FBXO3).) These results suggest that SAP25 may function as an adaptor protein to coordinate the assembly of different enzymatic complexes to control Sin3/HDAC-mediated gene expression."
USP11 affects IVDD
| 2
USP11 activates IVDD. 2 / 2
| 2

reach
"Inhibition of USP11 disrupts Sirt3 to promote oxidative stress-induced ferroptosis and aggravate IVDD (Zhu et al., 2023a)."

reach
"However, the IVDD induced by KO of USP11 could be reversed by the overexpression of Sirt3 (Fig. 7B and C)."
USP11 affects HSPA5
| 2
USP11 activates HSPA5. 2 / 2
| 2

reach
"The deubiquitinase USP11 promotes ovarian cancer chemoresistance by stabilizing BIP."

reach
"For example, Xiaolin Zhu et al. [28] identified that USP11 promotes ovarian cancer chemoresistance by removing the K48 ubiquitin chain of BIP."
USP11 affects HJURP
| 2
USP11 deubiquitinates HJURP. 2 / 2
| 2

reach
"Furthermore, USP11 deubiquitylates HJURP which is normally ubiquitylated to facilitate CENP-A incorporation at centromeric chromatin (Yilmaz et al., 2021), which thereby reinforces HR repair at centromeres in G ."

reach
"Yilmaz et al. [87] proposed a model in which the ubiquitin specific peptidase 11 (USP11) deubiquitinates the holliday junction recognition protein (HJURP) to promote its interaction with CENP-A and fa[MISSING/INVALID CREDENTIALS: limited to 200 char for Elsevier]"
USP11 affects H2BK120
| 2
USP11 deubiquitinates H2BK120. 2 / 2
| 2

reach
"USP11 also deubiquitinates H2BK120 and H2AK119."

reach
"USP11 can deubiquitinate H2AK119 and H2BK120 to separate ubiquitin molecules from histones and maintain genomic stability [223]."
USP11 affects H2AK119
| 2
USP11 deubiquitinates H2AK119. 2 / 2
| 2

reach
"USP11 also deubiquitinates H2BK120 and H2AK119."

reach
"USP11 can deubiquitinate H2AK119 and H2BK120 to separate ubiquitin molecules from histones and maintain genomic stability [223]."
USP11 affects Glioma
| 2
USP11 inhibits Glioma. 2 / 2
| 2

reach
"Hsin-Chieh Wu et al. [33] found that USP11 inhibits the occurrence and progression of glioma via deubiquitinating and stabilizing PML."

reach
"Studies have shown that USP11 can both inhibit tumor (glioma) and promote tumor (breast cancer)."
USP11 affects GDF10
| 2
| 2

sparser
"Targeting USP11-BIP axis might be a therapeutic strategy to improve the chemosensitivity of patients with ovarian cancer."

sparser
"China recently did a lot of work in the discovery of multiple drug resistance mechanisms, including overexpression of the USP11-BIP axis leading to drug resistance ( xref ), significantly upregulated TTK expression in high-grade serous ovarian carcinoma (HGSOC), and cisplatin-resistant ovarian cancer cells ( xref )."
USP11 affects FOXP3
1 | 1
1 | 1

sparser
"We found that USP11 can bind FOXP3 directly and remove the ubiquitin conjugation on FOXP3, enhancing the stability of FOXP3 (Fig.  xref )."
USP11 affects FOXO1
| 2
| 2

sparser
"These results highlight the protective role of the USP11-FOXO1 axis in mitigating ALI pathophysiology."

sparser
"Mechanistically, PTEN inhibits PI3K/AKT, leading to FOXO1 dephosphorylation and nuclear translocation, activating the binding of FOXO1 to the USP11 promoter, which increases USP11 protein and mRNA levels to increase PTEN stability."
USP11 affects FN1
| 1
USP11 increases the amount of FN1. 1 / 2
| 1

reach
"USP11 promotes TGFbeta-1-induced phosphorylation of SMAD2/3 and the expression of FN and SMA."
USP11 affects EEF1A1
1 | 1
USP11 deubiquitinates EEF1A1 on K439. 1 / 2
1 | 1

reach
"Mechanistically, USP11 interacted with and deubiquitinated eEF1A1 on Lys439, thereby inhibiting its ubiquitin-mediated degradation."
USP11 affects DNMT3A
| 1 1
USP11 leads to the sumoylation of DNMT3A. 2 / 2
| 1 1

sparser
"Interestingly, we show that USP11 enhances DNMT3A SUMOylation by promoting the interaction between DNMT3A and SUMO E3 Ligases, and DNMT3A SUMOylation also essential for maintaining DNMT3A protein stability and DNMT3A DNA Mtase activity."

reach
"Interestingly, we show that USP11 enhances DNMT3A SUMOylation by promoting the interaction between DNMT3A and SUMO E3 Ligases, and DNMT3A SUMOylation also essential for maintaining DNMT3A protein stability and DNMT3A DNA Mtase activity."
USP11 affects DNA Damage
| 2
| 2

reach
"Interestingly, depletion of another BRCA1-interacting protein, BRCA2, results in defects of DNA repair but not that of differentiation in mammary cells (14), which suggests that not all intrinsic DNA repair defects induced by deficiency of BRCA1-interacting proteins promote or are associated with aberrant differentiation.In this study, we discovered that loss of USP11 reduced the expression of E-cadherin and induced DNA damage in MECs and that overexpression of USP11 promoted luminal differentiation, enhanced DNA damage repair, and suppressed tumorigenesis."

reach
"In sum, these results indicate that Usp11 prevents E-cadherin from degradation and promotes DNA damage repair to suppress tumorigenesis, which is dependent on its deubiquitinase activity."

eidos
"We have proved that USP11 could promote colorectal cancer through stabilizing PPP1CA in our previous study 21 ."

eidos
"We have shown that USP11 could promote colorectal cancer , then we wondered whether USP11 is involved in chemotherapy resistance in CRC patients ."
USP11 affects Cebpb
| 2
| 2

sparser
"A reciprocal TAP-MS analysis of SFB-USP11 expressed in HEK 293T cells immunoprecipitated SPRTN in addition to USP7, which is a known USP11 interactor ( xref B and xref )."

sparser
"USP7 is a known interactor of USP11, while SAMHD1 and SPRTN were identified in SFB-USP11 TAP-MS analysis ( xref B )."

reach
"Conversely, the deubiquitinase USP11 has been shown to inhibit squamous cell carcinoma by stabilizing ARID1A protein through its interaction with syndecan‐2 (SDC2)."

reach
"Deletion of USP11 can promote the development of squamous cell carcinoma by promoting the degradation of ARID1A (65)."
USP11 affects CS
| 2
CS binds USP11. 2 / 2
| 2

sparser
"Overexpression of USP11-CS had no effect on colony formation under either condition ()."

sparser
"To address this question, we overexpressed USP11-WT, USP11-CS, or a control construct in Rv1 or VCaP cells and then performed colony formation assays in the presence of either vehicle or MTX."
USP11 affects CHUK
| 1
USP11 activates CHUK. 1 / 2
| 1

eidos
"Inhibition of USP11 expression reduces p53 levels and IKKalpha expression , as well as increasing the response of the NF-kappaB pathway to TNFalpha ( 197 ) ."
USP11 affects CASP3
| 1
USP11 inhibits CASP3. 1 / 2
| 1

reach
"As shown in XREF_FIG A & B, we observed that elevated expression of wild-type USP11, but not DUB deficient mutant USP11, significantly inhibits activation of caspase-3 and caspase -9, cleavage of PARP1 and anoikis in mammary gland epithelial cells."
USP11 affects ATF2
| 1 1
USP11 inhibits ATF2. 2 / 2
| 1 1

reach
"According to XREF_FIG, it appeared that RBMS1, NONO, PSMF1, TIA1, ID2, PLOD2, TFE3 activate ATF2; whereas RNASEH1, PTOV1, C11orf9, TEAD4, GLS, USP11, TNPO1, and PAWR inhibit ATF2."

sparser
"According to xref , it appeared that RBMS1, NONO, PSMF1, TIA1, ID2, PLOD2, TFE3 activate ATF2; whereas RNASEH1, PTOV1, C11orf9, TEAD4, GLS, USP11, TNPO1, and PAWR inhibit ATF2."
USP11 affects ARID1A
| 2
USP11 inhibits ARID1A. 2 / 2
| 2

reach
"Conversely, the deubiquitinase USP11 has been shown to inhibit squamous cell carcinoma by stabilizing ARID1A protein through its interaction with syndecan‐2 (SDC2)."

reach
"TRIM32 depletion inhibits SCC cell proliferation, metastasis, and chemoresistance by stabilizing ARID1A, while USP11 depletion promotes SCC development by promoting ARID1A degradation."
USP11 affects AKT
| 2
USP11 inhibits AKT. 2 / 2
| 2

reach
"Background: Ubiquitin-specific protease 11 (USP11), one of the principal phosphatase and tensin homolog (PTEN) deubiquitinases, can reserve PTEN polyubiquitination to maintain PTEN protein integrity and inhibit PI3K/AKT pathway activation."

reach
"Conversely in a total brain injury in-vivo model, Fang et al. demonstrated that USP11 negatively regulates the PI3K/AKT pathway by elevating Pyruvate Kinase M2 (PKM2) levels, causing neurological impairment and neuronal apoptosis [46]."
TRIP12 affects USP7
| 2
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
TRIM24 affects USP11
| 2
| 2

sparser
"We confirmed the previously known interaction with the deubiquitinase USP11 and the E3 ubiquitin ligase TRIM24 ( xref ), as well as the E3 SUMO protein ligase PIAS1 ( xref )."

sparser
"We confirmed the previously known interaction with the de-ubiquitinase USP11 and the E3-ubiquitin ligase TRIM24 ( xref ), as well as the E3 SUMO-protein ligase PIAS1 ( xref )."
TNF affects USP11
| 2
TNF inhibits USP11. 2 / 2
| 2

reach
"To determine the role of USP11 on the regulation of TNFalpha induced IL-6 gene expression, total RNAs were extracted from the control and USP11 knockdown HeLa cell lines treated with TNFalpha for the time points indicated."

reach
"In this assay, the control and USP11 knockdown HeLa cells were treated with TNFalpha at the time periods indicated and subsequently lysed."
SOX4 affects USP11
1 | 1
1 | 1

sparser
"However, no interaction between Sox4 and Usp11 could be detected using E18.5 cortical lysates (fig."
SOX11 affects USP11
| 2
SOX11 activates USP11. 2 / 2
| 2

reach
"It is intriguing that Usp11 targets Sox11, but not its paralog Sox4, in the developing cortex."

reach
"In particular, we intended to test whether Sox11 overexpression rescues the phenotypes of Usp11 deficiency."
RNAi affects USP11
| 2
RNAi activates USP11. 2 / 2
| 2

reach
"Clearly, RNAi mediated USP11 depletion by multiple siRNAs in both mouse and human cells show the same inhibitory effects on TGFbeta induced phosphorylation of SMAD2 as well as EMT."

reach
"Next, we investigated the impact of RNAi mediated depletion of USP11 on TGFbeta signalling."
PSD4 affects USP11
| 1 1
| 1 1

reach
"To test whether USP11 can directly interact with the TIC, we next performed cap pulldown assays using cap binding m 7 GTP immobilized beads."

sparser
"To test whether USP11 can directly interact with the TIC, we next performed cap pulldown assays using cap-binding m 7 GTP immobilized beads."
PPM1G affects USP7
| 2
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
MLF1 affects USP11
| 1 1
| 1 1

reach
"Since MLF1 is highly related to MLF2, we demonstrated that MLF1 also interacts with DCAF8 and USP11, suggesting that CRL4 DCAF8 and USP11 may also regulate the expression of MLF1."

sparser
"Additionally, we also determined the exact interaction between MLF1 and USP11 ( Fig. 4 C), which indicated that USP11 may play a role in stabilizing the protein level of MLF1."
LCK affects USP7
| 2
USP7 binds USP11 and LCK. 2 / 2
| 2

reach
"Thus, CUTLL1 cells were treated with DXM to evaluate the effect of GCs on the USP7/USP11-LCK complex."

reach
"We demonstrated that disruption of the USP7/USP11-LCK complex sensitizes T-ALL to GC treatment via NR3C1 up-regulation."
KITLG affects USP11
| 2
| 2

sparser
"Furthermore, mutational analysis demonstrates that distinct regions of SAP25 participate in its interaction with USP11, OGT/TETs, and SCF(FBXO3)."

sparser
"Finally, we use mutational analysis to demonstrate that distinct regions of SAP25 participate in its interaction with USP11, OGT/TETs, and SCF(FBXO3).) These results suggest that SAP25 may function as an adaptor protein to coordinate the assembly of different enzymatic complexes to control Sin3/HDAC-mediated gene expression."
HDAC2 affects USP11
| 2
HDAC2 inhibits USP11. 2 / 2
| 2

reach
"The knockout of both HDAC1 and HDAC2 upregulated USP11 at the mRNA and protein levels in U87-vIII, U251-vIII and N9-vIII cells."

reach
"In our study, the concurrent inhibition of HDAC1 and HDAC2 upregulated USP11 and induced G1/S transition arrest in GBM cells in vitro and in vivo."
HDAC1 affects USP11
| 2
HDAC1 inhibits USP11. 2 / 2
| 2

reach
"The knockout of both HDAC1 and HDAC2 upregulated USP11 at the mRNA and protein levels in U87-vIII, U251-vIII and N9-vIII cells."

reach
"In our study, the concurrent inhibition of HDAC1 and HDAC2 upregulated USP11 and induced G1/S transition arrest in GBM cells in vitro and in vivo."
GDF10 affects USP11
| 2
| 2

sparser
"Targeting USP11-BIP axis might be a therapeutic strategy to improve the chemosensitivity of patients with ovarian cancer."

sparser
"China recently did a lot of work in the discovery of multiple drug resistance mechanisms, including overexpression of the USP11-BIP axis leading to drug resistance ( xref ), significantly upregulated TTK expression in high-grade serous ovarian carcinoma (HGSOC), and cisplatin-resistant ovarian cancer cells ( xref )."
FOXP3 affects USP11
1 | 1
1 | 1

sparser
"We found that USP11 can bind FOXP3 directly and remove the ubiquitin conjugation on FOXP3, enhancing the stability of FOXP3 (Fig.  xref )."
FOXO1 affects USP11
| 2
| 2

sparser
"These results highlight the protective role of the USP11-FOXO1 axis in mitigating ALI pathophysiology."

sparser
"Mechanistically, PTEN inhibits PI3K/AKT, leading to FOXO1 dephosphorylation and nuclear translocation, activating the binding of FOXO1 to the USP11 promoter, which increases USP11 protein and mRNA levels to increase PTEN stability."
FOXO affects USP11
| 2
FOXO increases the amount of USP11. 2 / 2
| 2

reach
"PTEN activates the transcription of USP11 by the PI3K/FOXO pathway to enhance its own stability in prostate cancer cell line [26]."

reach
"Furthermore, we discovered that PTEN-induced FOXO activation promotes USP11 transcription, which in turn stabilizes PTEN, suggesting that PTEN autoregulates itself through a PI3K-FOXO-USP11 feedforward loop to create a PTEN ‘integrated circuit’ that induces tumor suppression."
FASN affects USP11
| 2
FASN phosphorylates USP11. 2 / 2
| 2

reach
"Similarly, the Gartenhaus lab using both pharmacologic and genetic approaches, reported that FASN induced S6Kinase signaling to phosphorylate USP11 enhancing its interaction and stability of eIF4B in DLBCL consequently promoting oncogenic translation (11)."

reach
"Intriguingly, the activity of USP11 could be phosphorylated by FASN-induced PI3K-S6 kinase signaling, and phosphorylated USP11 further enhances its interaction with eIF4B and thereby promoting oncogenic translation [37], implying that the activity of deubiquitinase USP11 is also activated by the kinase and enriches the complex regulatory network of USP11."
EGFR-vIII affects USP11
| 2
EGFR-vIII decreases the amount of USP11. 2 / 2
| 2

reach
"IHC staining showed that EGFR-vIII activation significantly upregulated the expression of P-AKT, HDAC1 and HDAC2 and downregulated H2AZK4/7AC, H3K27AC and USP11 expression."

reach
"EGFR-vIII activation inhibited USP11 expression through a PI3K and Akt mediated epigenetic pathway."
EGFR-vIII mutation affects USP11
| 2
EGFR-vIII mutation inhibits USP11. 2 / 2
| 2

eidos
"EGFR-vIII mutation can downregulate H2AZK4 / 7AC and H3K27AC , inhibiting USP11 expression though the PI3K / AKT-HDAC1 / 2 axis ."

eidos
"We demonstrated that the EGFR-vIII mutation downregulated H2AZK4 / 7AC and H3K27AC , inhibiting USP11 expression though the PI3K / AKT-HDAC1 / 2 axis ."
EGFR-vIII activation affects USP11
| 2
EGFR-vIII activation inhibits USP11. 2 / 2
| 2

eidos
"IHC staining showed that EGFR-vIII activation significantly upregulated the expression of P-AKT , HDAC1 and HDAC2 and downregulated H2AZK4 / 7AC , H3K27AC and USP11 expression ( Fig. 7e ) ."

eidos
"E EGFR-vIII activation significantly upregulated the expression of P-AKT , HDAC1 and HDAC2 and downregulated H2AZK4 / 7AC , H3K27AC and USP11 expression ."
DDX24 affects USP7
| 2
| 2

sparser
"Using USP7 binding pocket mutants, we show that USP11, PPM1G, TRIP12 and DDX24 bind USP7 through its TRAF domain binding pocket, while DHX40 interacts with USP7 through a distinct binding pocket in the Ubl2 domain."

sparser
"On the other hand, USP7 is bound by DDX24, USP11, PPM1G, and TRIP12 via its TRAF domain. xref Another study used affinity purification in conjunction with mass spectrometry for profiling USP7 interaction on FLAG-tagged USP7 expressed in AGS gastric carcinoma cells."
DDX24 affects PPM1G, TRIP12, and USP11
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sparser
"To determine which binding pocket was used to mediate the interactions with USP11, PPM1G, DHX40, DDX24 and TRIP12, we repeated the myc-USP7 co-IP experiments in CNE2Z cells, using USP7 mutants with D164A,W165A mutations to disrupt the TRAF binding pocket (referred to as DW) or D762R,D764R mutations to disrupt the Ubl2 pocket (referred to as Ubl2)."

sparser
"Comparison of protein recoveries with individual DW and Ubl2 USP7 mutants showed that interactions with PPM1G, USP11, DDX24 and TRIP12 were greatly affected by the DW mutation and much less affected by the Ubl2 mutation, indicating that these proteins all interact predominantly bind USP7 through the TRAF binding pocket."
Cebpb affects USP11
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sparser
"A reciprocal TAP-MS analysis of SFB-USP11 expressed in HEK 293T cells immunoprecipitated SPRTN in addition to USP7, which is a known USP11 interactor ( xref B and xref )."

sparser
"USP7 is a known interactor of USP11, while SAMHD1 and SPRTN were identified in SFB-USP11 TAP-MS analysis ( xref B )."
CS affects USP11
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CS binds USP11. 2 / 2
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sparser
"Overexpression of USP11-CS had no effect on colony formation under either condition ()."

sparser
"To address this question, we overexpressed USP11-WT, USP11-CS, or a control construct in Rv1 or VCaP cells and then performed colony formation assays in the presence of either vehicle or MTX."
C1QTNF9 affects USP11
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reach
"USP11, inhibited by CTRP9, protects CD36 protein from degradation by deubiquitination."

reach
"These results suggest that USP11, inhibited by CTRP9, protects CD36 protein from degradation by deubiquitination."
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17beta-estradiol increases the amount of USP11. 2 / 2
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reach
"Estradiol is known to stimulate USP11 expression in breast cancer [15], but Estradiol and progesterone failed to upregulate USP11 levels in AtT20 and pituitary primary cells (Supplementary Fig. 3B-C)."

reach
"Estradiol stimulates USP11 expression, which in turn enhances the transcriptional activity of estrogen receptor alpha, correlating with poorer prognosis in breast cancer [15]."

reach
"Furthermore, USP11-mediated histone deubiquitination, together with NurD-mediated histone deacetylation, promotes the termination of the DNA damage repair response and results in the reconstruction of chromatin structure [66]."
USP11 affects hiPSCs-SFTPC -AOs
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USP11 activates hiPSCs-SFTPC -AOs. 1 / 1
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reach
"Notably, USP11 depletion produced a marked reduction in Sirius red intensity in the hiPSCs-SFTPC -AOs (Figure 6G; middle panel), suggesting that the knockdown of USP11 decreases collagen deposition."
USP11 affects cells being more 5-Fu
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USP11 inhibits cells being more 5-Fu. 1 / 1
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eidos
"The experimental results showed that USP11 overexpression could enhance CRC cells resistance to 5-Fu , and knockdown of USP11 could result in CRC cells being more vulnerable to 5-Fu ."
USP11 affects SLC45A3
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reach
"USP11 KD also reduced transcript levels of the AR targets KLK2, KLK3, NKX3-1, TMPRSS2, SLC45A3, and PMEPA1 in Rv1 (SI Appendix, Fig. S2H), VCaP (SI Appendix, Fig. S2I), and C4-2 (SI Appendix, Fig. S2J) cells, and in Rv1 cells decreased those levels in the presence or absence of androgen (SI Appendix, Fig. S2K)."
USP11 affects LPA
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reach
"LPA treatment disassociates LPA1 and USP11, while it enhances LPA1 association with Nedd4L [62]."
USP11 affects ICH-like symptoms
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USP11 inhibits ICH-like symptoms. 1 / 1
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reach
"Also, the combination of USP11 knockdown and restoration of p53 or KLF2 knockdown elevated the mNSS value (Figure 5B) and brain water content (Figure 5C) reduced by USP11 knockdown alone in rats with ICH-like symptoms."

reach
"Ubiquitin specific peptidase 11 knockdown slows Huntington's disease progression via regulating mitochondrial dysfunction and neuronal damage depending on PTEN-mediated AKT pathway."

reach
"Here, we identify the deubiquitylating enzyme USP11 as a previously uncharacterised PRMT1 substrate, and demonstrate that the methylation of USP11 promotes DNA end-resection and the repair of DNA double strand breaks (DSB) by homologous recombination (HR), an event that is independent from another USP11-HR activity, the deubiquitylation of PALB2."

reach
"Tanggang Deng et al. [32] identified that USP11 inhibits the proliferation of non-small cell lung cancer via deubiquitinating and stabilizing P21 (Fig. 4)."
PI3K-S6 kinase affects USP11
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PI3K-S6 kinase phosphorylates USP11. 1 / 1
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reach
"Intriguingly, the activity of USP11 could be phosphorylated by FASN-induced PI3K-S6 kinase signaling, and phosphorylated USP11 further enhances its interaction with eIF4B and thereby promoting oncogenic translation [37], implying that the activity of deubiquitinase USP11 is also activated by the kinase and enriches the complex regulatory network of USP11."
PI3K affects USP11
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PI3K decreases the amount of USP11. 1 / 1
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reach
"Emerging evidence has shown that the PI3K and AKT pathway can inhibit USP11 transcription and translation."
LPA affects USP11
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reach
"LPA treatment disassociates LPA1 and USP11, while it enhances LPA1 association with Nedd4L [62]."
FK228 treatment affects USP11
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FK228 treatment activates USP11. 1 / 1
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eidos
"In addition , FK228 treatment upregulated H2AZK4 / 7AC and H3K27AC expression and enhanced USP11 expression ."